Wall clock time and date at job start Tue Mar 31 2020 06:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.52999 * 115.55149 * 34.32977 * 3 2 1 5 5 C 1.53005 * 117.49396 * 248.61912 * 3 2 1 6 6 C 1.53002 * 117.49443 * 180.02562 * 3 2 1 7 7 H 1.09002 * 117.49749 * 214.97590 * 6 3 2 8 8 C 1.50700 * 117.50387 * 359.97438 * 6 3 2 9 9 O 1.21276 * 119.99393 * 359.97438 * 8 6 3 10 10 N 1.34775 * 120.00051 * 180.02562 * 8 6 3 11 11 C 1.46500 * 119.99473 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.47306 * 90.00199 * 11 10 8 13 13 H 1.08001 * 119.99789 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00312 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99906 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47286 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47161 * 120.00457 * 16 14 12 19 19 H 1.48503 * 109.47239 * 240.00111 * 16 14 12 20 20 C 1.46497 * 120.00116 * 359.97438 * 10 8 6 21 21 C 1.53002 * 109.47154 * 90.00024 * 20 10 8 22 22 F 1.39905 * 109.47198 * 59.99671 * 21 20 10 23 23 F 1.39897 * 109.47040 * 179.97438 * 21 20 10 24 24 F 1.39905 * 109.47063 * 300.00165 * 21 20 10 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.08992 * 109.47251 * 85.58687 * 4 3 2 31 31 H 1.09001 * 109.46761 * 205.58366 * 4 3 2 32 32 H 1.08998 * 109.46850 * 325.57978 * 4 3 2 33 33 H 1.08991 * 117.50196 * 0.02562 * 5 3 2 34 34 H 1.09009 * 117.49403 * 145.02557 * 5 3 2 35 35 H 1.08998 * 109.46832 * 209.99837 * 11 10 8 36 36 H 1.08996 * 109.47213 * 329.99732 * 11 10 8 37 37 H 0.96998 * 119.99998 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.46989 * 209.99709 * 20 10 8 39 39 H 1.08997 * 109.46982 * 329.99876 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4446 0.7785 5 6 2.7419 1.9435 -1.2638 6 6 3.5550 1.6561 -0.0006 7 1 3.9430 2.5107 0.5536 8 6 4.4307 0.4296 -0.0006 9 8 3.9282 -0.6741 0.0004 10 7 5.7722 0.5594 -0.0006 11 6 6.6234 -0.6329 0.0001 12 6 6.9154 -1.0424 -1.4205 13 1 6.5073 -0.4719 -2.2417 14 6 7.7034 -2.1455 -1.6719 15 7 8.1999 -2.8406 -0.6720 16 14 8.0647 -2.6535 -3.4328 17 1 7.3933 -1.7142 -4.3667 18 1 9.5308 -2.6200 -3.6668 19 1 7.5578 -4.0299 -3.6649 20 6 6.3791 1.8928 -0.0012 21 6 6.5903 2.3577 1.4411 22 9 7.4367 1.4603 2.1012 23 9 7.1704 3.6307 1.4405 24 9 5.3574 2.4067 2.1006 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4766 2.4322 1.8286 31 1 1.3363 3.4444 0.3713 32 1 0.1338 2.1713 0.6898 33 1 2.8400 1.2457 -2.0953 34 1 2.5947 2.9875 -1.5410 35 1 7.5588 -0.4112 0.5138 36 1 6.1102 -1.4454 0.5143 37 1 8.7540 -3.6168 -0.8488 38 1 7.3397 1.8545 -0.5149 39 1 5.7196 2.5919 -0.5154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133731185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:40 Heat of formation + Delta-G solvation = -172.003358 kcal Electronic energy + Delta-G solvation = -25239.438644 eV Core-core repulsion = 21153.822745 eV Total energy + Delta-G solvation = -4085.615899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.83629 -47.40199 -47.26373 -39.93200 -37.34714 -35.18652 -32.82833 -31.96666 -29.33522 -28.28925 -27.17311 -24.25720 -23.59515 -23.27444 -21.97736 -19.27508 -18.52533 -18.27242 -18.03987 -17.43085 -16.55122 -15.99471 -15.44579 -14.78893 -14.57330 -14.32843 -14.15631 -14.10874 -13.87548 -13.76095 -13.57221 -13.45461 -13.40260 -13.09322 -12.76300 -12.35665 -12.28885 -11.97603 -11.89829 -11.71503 -11.47510 -11.29800 -11.00585 -10.94971 -10.71448 -10.67830 -10.22350 -9.91606 -9.72051 -9.53072 -8.84732 -8.50273 -7.99501 -6.11043 -4.16703 2.79750 3.19814 3.25988 3.33881 3.36335 3.48943 3.92724 4.18448 4.27210 4.38972 4.44598 4.78079 4.83819 4.98059 5.13993 5.21999 5.23964 5.34375 5.49511 5.57910 5.63759 5.70180 5.77676 5.82559 5.87302 6.02728 6.13676 6.23392 6.37434 6.54057 6.81455 6.89042 7.29766 7.37047 7.84017 8.11035 8.13569 8.78694 8.92659 9.48715 10.97352 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.006701 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.983507 B = 4177.436217 C = 5835.400698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 C -0.090 4.090 4 C -0.121 4.121 5 C -0.150 4.150 6 C -0.196 4.196 7 H 0.121 0.879 8 C 0.542 3.458 9 O -0.516 6.516 10 N -0.594 5.594 11 C 0.242 3.758 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.076 3.924 21 C 0.427 3.573 22 F -0.175 7.175 23 F -0.189 7.189 24 F -0.185 7.185 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.264 0.736 38 H 0.128 0.872 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 13.268 2.048 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.178 4.178 5 C -0.187 4.187 6 C -0.218 4.218 7 H 0.139 0.861 8 C 0.330 3.670 9 O -0.391 6.391 10 N -0.325 5.325 11 C 0.124 3.876 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.052 4.052 21 C 0.370 3.630 22 F -0.156 7.156 23 F -0.170 7.170 24 F -0.167 7.167 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.266 12.460 2.123 15.673 hybrid contribution 0.637 -0.095 -0.625 0.897 sum -8.629 12.366 1.498 15.153 Atomic orbital electron populations 1.21928 0.96868 1.01134 1.01085 1.21093 0.93653 0.92486 1.04241 1.21524 0.90685 0.97524 0.99278 1.21492 0.99723 0.96935 0.99620 1.23180 1.02077 1.02113 0.91321 1.22655 0.94256 0.99860 1.04990 0.86128 1.19528 0.81938 0.89378 0.76180 1.90679 1.72642 1.27379 1.48401 1.48150 1.06179 1.06041 1.72178 1.19489 0.89021 0.81120 0.97947 1.21417 1.31089 1.12432 0.92010 0.92232 1.24933 0.95612 0.95943 0.97494 1.69943 1.33906 1.18402 1.30714 0.86432 0.77868 0.78637 0.84407 1.19785 1.20900 1.20843 1.22582 1.04739 0.88696 0.89177 1.21768 0.73874 0.74857 0.92458 1.93220 1.71392 1.67603 1.83406 1.93152 1.84977 1.41816 1.97102 1.93128 1.43561 1.96195 1.83804 0.92805 0.93157 0.93023 0.90713 0.90705 0.92163 0.92653 0.91089 0.88193 0.88271 0.94247 0.93336 0.92633 0.85432 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.92 37.16 0.33 -1.47 16 2 C -0.08 -1.17 4.36 -26.73 -0.12 -1.29 16 3 C -0.09 -1.22 2.47 -154.51 -0.38 -1.60 16 4 C -0.12 -1.29 9.49 37.16 0.35 -0.93 16 5 C -0.15 -1.94 9.52 -26.75 -0.25 -2.20 16 6 C -0.20 -2.98 4.17 -91.79 -0.38 -3.36 16 7 H 0.12 1.64 5.31 -51.93 -0.28 1.36 16 8 C 0.54 10.90 7.10 -10.99 -0.08 10.82 16 9 O -0.52 -12.20 12.68 5.56 0.07 -12.13 16 10 N -0.59 -12.10 2.37 -175.07 -0.42 -12.51 16 11 C 0.24 6.14 4.95 -5.20 -0.03 6.12 16 12 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.08 1.18 5.22 -4.04 -0.02 1.16 16 21 C 0.43 6.54 3.29 37.16 0.12 6.66 16 22 F -0.17 -3.15 16.23 2.25 0.04 -3.11 16 23 F -0.19 -2.59 17.32 2.25 0.04 -2.55 16 24 F -0.19 -2.87 14.56 2.25 0.03 -2.84 16 25 H 0.05 0.56 6.45 -51.93 -0.33 0.23 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.30 7.02 -51.93 -0.36 0.94 16 29 H 0.07 1.30 7.26 -51.93 -0.38 0.93 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 32 H 0.07 0.67 5.59 -51.93 -0.29 0.38 16 33 H 0.10 1.43 8.05 -51.93 -0.42 1.01 16 34 H 0.10 1.01 8.05 -51.92 -0.42 0.59 16 35 H 0.04 1.02 7.25 -51.93 -0.38 0.64 16 36 H 0.05 1.40 7.42 -51.93 -0.39 1.01 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.13 1.90 8.07 -51.93 -0.42 1.48 16 39 H 0.11 1.37 6.64 -51.93 -0.34 1.03 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -30.89 327.20 -5.69 -36.58 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.23 Total: -0.14 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.87 Total: 0.74 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.32 Total: -37.82 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 0.11 Total: -8.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.89 -5.69 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133731185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.419 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds