Wall clock time and date at job start Tue Mar 31 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.52999 * 115.55149 * 34.32977 * 3 2 1 5 5 C 1.53005 * 117.49396 * 248.61912 * 3 2 1 6 6 C 1.53002 * 117.49443 * 180.02562 * 3 2 1 7 7 H 1.09002 * 117.49749 * 214.97590 * 6 3 2 8 8 C 1.50700 * 117.50387 * 359.97438 * 6 3 2 9 9 O 1.21276 * 119.99393 * 359.97438 * 8 6 3 10 10 N 1.34775 * 120.00051 * 180.02562 * 8 6 3 11 11 C 1.46500 * 119.99473 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.47306 * 90.00199 * 11 10 8 13 13 H 1.08001 * 119.99789 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00312 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99906 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47286 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47161 * 120.00457 * 16 14 12 19 19 H 1.48503 * 109.47239 * 240.00111 * 16 14 12 20 20 C 1.46497 * 120.00116 * 359.97438 * 10 8 6 21 21 C 1.53002 * 109.47154 * 90.00024 * 20 10 8 22 22 F 1.39905 * 109.47198 * 59.99671 * 21 20 10 23 23 F 1.39897 * 109.47040 * 179.97438 * 21 20 10 24 24 F 1.39905 * 109.47063 * 300.00165 * 21 20 10 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.08992 * 109.47251 * 85.58687 * 4 3 2 31 31 H 1.09001 * 109.46761 * 205.58366 * 4 3 2 32 32 H 1.08998 * 109.46850 * 325.57978 * 4 3 2 33 33 H 1.08991 * 117.50196 * 0.02562 * 5 3 2 34 34 H 1.09009 * 117.49403 * 145.02557 * 5 3 2 35 35 H 1.08998 * 109.46832 * 209.99837 * 11 10 8 36 36 H 1.08996 * 109.47213 * 329.99732 * 11 10 8 37 37 H 0.96998 * 119.99998 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.46989 * 209.99709 * 20 10 8 39 39 H 1.08997 * 109.46982 * 329.99876 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4446 0.7785 5 6 2.7419 1.9435 -1.2638 6 6 3.5550 1.6561 -0.0006 7 1 3.9430 2.5107 0.5536 8 6 4.4307 0.4296 -0.0006 9 8 3.9282 -0.6741 0.0004 10 7 5.7722 0.5594 -0.0006 11 6 6.6234 -0.6329 0.0001 12 6 6.9154 -1.0424 -1.4205 13 1 6.5073 -0.4719 -2.2417 14 6 7.7034 -2.1455 -1.6719 15 7 8.1999 -2.8406 -0.6720 16 14 8.0647 -2.6535 -3.4328 17 1 7.3933 -1.7142 -4.3667 18 1 9.5308 -2.6200 -3.6668 19 1 7.5578 -4.0299 -3.6649 20 6 6.3791 1.8928 -0.0012 21 6 6.5903 2.3577 1.4411 22 9 7.4367 1.4603 2.1012 23 9 7.1704 3.6307 1.4405 24 9 5.3574 2.4067 2.1006 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4766 2.4322 1.8286 31 1 1.3363 3.4444 0.3713 32 1 0.1338 2.1713 0.6898 33 1 2.8400 1.2457 -2.0953 34 1 2.5947 2.9875 -1.5410 35 1 7.5588 -0.4112 0.5138 36 1 6.1102 -1.4454 0.5143 37 1 8.7540 -3.6168 -0.8488 38 1 7.3397 1.8545 -0.5149 39 1 5.7196 2.5919 -0.5154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133731185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:39 Heat of formation + Delta-G solvation = -189.641043 kcal Electronic energy + Delta-G solvation = -25240.203472 eV Core-core repulsion = 21153.822745 eV Total energy + Delta-G solvation = -4086.380727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.10418 -48.62870 -48.58530 -41.34956 -38.67919 -36.83313 -34.87850 -33.10559 -30.96528 -29.39501 -28.74420 -25.95978 -24.67008 -24.62273 -23.56989 -20.62150 -19.76010 -19.56136 -19.35310 -18.94486 -18.37163 -17.58867 -17.00024 -16.27836 -16.05797 -15.58385 -15.52398 -15.45492 -15.07870 -15.02600 -14.99602 -14.74101 -14.68620 -14.31382 -14.14174 -13.94771 -13.66497 -13.41389 -13.15157 -13.04976 -12.89868 -12.65930 -12.60887 -12.52558 -12.22030 -12.02271 -11.77680 -11.75099 -10.99279 -10.72723 -10.66139 -10.34685 -9.75340 -8.24874 -6.39425 1.36938 1.38828 1.41256 1.50654 1.82655 2.01189 2.38310 2.73626 2.92882 3.02346 3.05865 3.18253 3.59060 3.69031 3.88847 4.00756 4.10841 4.18796 4.34842 4.48632 4.60897 4.73804 4.78261 4.88323 4.98109 5.00212 5.10747 5.16656 5.18811 5.27522 5.32354 5.41642 5.46511 5.67000 5.72791 6.00342 6.48198 6.70078 7.22572 7.36325 8.83592 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.006701 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.983507 B = 4177.436217 C = 5835.400698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.091 4.091 4 C -0.116 4.116 5 C -0.128 4.128 6 C -0.207 4.207 7 H 0.144 0.856 8 C 0.532 3.468 9 O -0.566 6.566 10 N -0.602 5.602 11 C 0.261 3.739 12 C -0.541 4.541 13 H 0.060 0.940 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.284 1.284 20 C 0.073 3.927 21 C 0.433 3.567 22 F -0.195 7.195 23 F -0.173 7.173 24 F -0.185 7.185 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.028 0.972 36 H -0.001 1.001 37 H 0.267 0.733 38 H 0.134 0.866 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 16.209 0.689 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.091 4.091 4 C -0.172 4.172 5 C -0.165 4.165 6 C -0.228 4.228 7 H 0.162 0.838 8 C 0.322 3.678 9 O -0.444 6.444 10 N -0.332 5.332 11 C 0.140 3.860 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.793 3.207 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.210 1.210 20 C -0.053 4.053 21 C 0.378 3.622 22 F -0.177 7.177 23 F -0.155 7.155 24 F -0.166 7.166 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.046 0.954 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.420 15.457 0.769 18.657 hybrid contribution 0.986 -1.025 -0.151 1.431 sum -9.433 14.432 0.618 17.252 Atomic orbital electron populations 1.21866 0.93947 1.01591 1.02756 1.20970 0.96172 0.93424 1.00940 1.21709 0.89827 0.97216 1.00374 1.21520 0.99677 0.97052 0.98976 1.23316 0.99471 1.03982 0.89778 1.22600 0.94389 0.97977 1.07817 0.83832 1.20504 0.82016 0.90581 0.74707 1.90661 1.73499 1.29819 1.50449 1.48036 1.06262 1.06646 1.72303 1.18876 0.88496 0.82099 0.96512 1.21698 1.30852 1.12683 0.92718 0.92141 1.25867 0.95407 0.95920 1.01919 1.70071 1.34684 1.18978 1.33098 0.85347 0.78255 0.77971 0.79105 1.18714 1.19550 1.21048 1.22896 1.05837 0.86830 0.89725 1.21607 0.73623 0.75043 0.91973 1.93189 1.72086 1.68554 1.83833 1.93183 1.84724 1.40572 1.97009 1.93128 1.43465 1.96201 1.83816 0.90916 0.91494 0.93352 0.94108 0.94174 0.92423 0.90146 0.89691 0.90067 0.83951 0.95385 0.98280 0.92404 0.84830 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.92 71.98 0.64 -2.57 16 2 C -0.08 -2.39 4.36 30.59 0.13 -2.26 16 3 C -0.09 -2.29 2.47 -52.18 -0.13 -2.42 16 4 C -0.12 -2.01 9.49 71.98 0.68 -1.33 16 5 C -0.13 -2.95 9.52 30.58 0.29 -2.66 16 6 C -0.21 -5.92 4.17 -11.55 -0.05 -5.97 16 7 H 0.14 3.42 5.31 -2.39 -0.01 3.40 16 8 C 0.53 21.88 7.10 87.66 0.62 22.50 16 9 O -0.57 -28.53 12.68 -3.02 -0.04 -28.56 16 10 N -0.60 -24.98 2.37 -826.18 -1.96 -26.94 16 11 C 0.26 13.88 4.95 85.63 0.42 14.31 16 12 C -0.54 -30.32 9.39 25.60 0.24 -30.08 16 13 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 14 C 0.01 0.46 5.46 84.65 0.46 0.92 16 15 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 16 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 C 0.07 2.16 5.22 86.38 0.45 2.61 16 21 C 0.43 12.72 3.29 71.98 0.24 12.96 16 22 F -0.19 -7.09 16.23 44.97 0.73 -6.36 16 23 F -0.17 -4.34 17.32 44.97 0.78 -3.56 16 24 F -0.18 -5.43 14.56 44.97 0.65 -4.78 16 25 H 0.07 1.34 6.45 -2.39 -0.02 1.33 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 1.50 7.02 -2.39 -0.02 1.48 16 29 H 0.04 1.49 7.26 -2.39 -0.02 1.47 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.03 7.90 -2.39 -0.02 1.02 16 32 H 0.08 1.26 5.59 -2.39 -0.01 1.24 16 33 H 0.08 2.21 8.05 -2.39 -0.02 2.19 16 34 H 0.14 2.09 8.05 -2.38 -0.02 2.07 16 35 H 0.03 1.53 7.25 -2.39 -0.02 1.52 16 36 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.13 3.80 8.07 -2.39 -0.02 3.79 16 39 H 0.15 3.24 6.64 -2.39 -0.02 3.22 16 Total: -1.00 -71.71 327.20 7.55 -64.15 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.07 Total: 9.55 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 4.01 Total: 6.01 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -1.68 Total: -82.68 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.04 Total: -28.56 kcal Atomic # 9 Polarization: -16.86 SS G_CDS: 2.16 Total: -14.70 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.71 7.55 -64.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133731185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.487 kcal (2) G-P(sol) polarization free energy of solvation -71.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds