Wall clock time and date at job start Tue Mar 31 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 C 1.53000 * 115.56456 * 325.68578 * 3 2 1 5 5 C 1.53002 * 117.49842 * 111.38174 * 3 2 1 6 6 C 1.52996 * 60.00193 * 107.48649 * 5 3 2 7 7 H 1.09001 * 117.51994 * 252.52012 * 6 5 3 8 8 C 1.50699 * 117.50185 * 107.48729 * 6 5 3 9 9 O 1.21276 * 120.00018 * 291.38271 * 8 6 5 10 10 N 1.34780 * 120.00043 * 111.37627 * 8 6 5 11 11 C 1.46493 * 120.00248 * 180.02562 * 10 8 6 12 12 C 1.50706 * 109.47128 * 269.99866 * 11 10 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.46507 * 119.99687 * 0.02562 * 10 8 6 21 21 C 1.53002 * 109.47219 * 269.99856 * 20 10 8 22 22 F 1.39903 * 109.46592 * 60.00182 * 21 20 10 23 23 F 1.39893 * 109.47282 * 180.02562 * 21 20 10 24 24 F 1.39905 * 109.46932 * 300.00183 * 21 20 10 25 25 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47268 * 299.99533 * 1 2 3 27 27 H 1.08996 * 109.46983 * 60.00168 * 1 2 3 28 28 H 1.09002 * 109.47071 * 239.99957 * 2 1 3 29 29 H 1.09003 * 109.47386 * 119.99878 * 2 1 3 30 30 H 1.08997 * 109.47124 * 274.31731 * 4 3 2 31 31 H 1.09005 * 109.46848 * 34.31270 * 4 3 2 32 32 H 1.08994 * 109.47225 * 154.31365 * 4 3 2 33 33 H 1.08999 * 117.50093 * 359.97438 * 5 3 2 34 34 H 1.08998 * 117.49512 * 214.97531 * 5 3 2 35 35 H 1.09001 * 109.47786 * 150.00138 * 11 10 8 36 36 H 1.09006 * 109.47401 * 29.99724 * 11 10 8 37 37 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 38 38 H 1.08994 * 109.46878 * 30.00015 * 20 10 8 39 39 H 1.09002 * 109.46817 * 150.00396 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1851 2.4449 -0.7781 5 6 2.7419 1.9437 1.2638 6 6 3.5549 1.6562 0.0000 7 1 4.1883 0.7691 -0.0004 8 6 4.0909 2.8379 -0.7664 9 8 3.3286 3.5767 -1.3527 10 7 5.4175 3.0737 -0.8001 11 6 5.9386 4.2227 -1.5447 12 6 6.2310 3.8106 -2.9645 13 1 6.0474 2.7942 -3.2804 14 6 6.7328 4.7309 -3.8600 15 7 6.9568 5.9684 -3.4752 16 14 7.0958 4.2198 -5.6197 17 1 7.6228 5.3848 -6.3748 18 1 8.1056 3.1309 -5.6206 19 1 5.8472 3.7375 -6.2627 20 6 6.3384 2.1809 -0.0922 21 6 6.5436 2.6885 1.3365 22 9 5.3140 2.7142 2.0033 23 9 7.4234 1.8363 2.0124 24 9 7.0814 3.9795 1.3000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.4775 2.4339 -1.8280 31 1 0.1338 2.1707 -0.6908 32 1 1.3350 3.4443 -0.3697 33 1 2.8400 1.2459 2.0953 34 1 2.5946 2.9875 1.5408 35 1 6.8555 4.5760 -1.0729 36 1 5.1979 5.0225 -1.5437 37 1 6.7686 6.2337 -2.5613 38 1 5.9194 1.1751 -0.0637 39 1 7.2965 2.1609 -0.6117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133731389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:41 Heat of formation + Delta-G solvation = -173.250339 kcal Electronic energy + Delta-G solvation = -25276.360771 eV Core-core repulsion = 21190.690798 eV Total energy + Delta-G solvation = -4085.669972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.85577 -47.40886 -47.30314 -40.00444 -37.47782 -35.32790 -33.09386 -32.14884 -29.25816 -28.07101 -26.87942 -24.28157 -23.76769 -23.32244 -22.13521 -19.40723 -18.54969 -18.33173 -18.16433 -17.41061 -16.93200 -16.25773 -15.38907 -14.98316 -14.59997 -14.31002 -14.23334 -14.09793 -13.82221 -13.77485 -13.58836 -13.49586 -13.45800 -12.89887 -12.67426 -12.49060 -12.24182 -12.17341 -12.02063 -11.95544 -11.58771 -11.41352 -11.09777 -10.97030 -10.78946 -10.65237 -10.13821 -9.94167 -9.62955 -9.29842 -8.93518 -8.44766 -7.93985 -6.45061 -4.18300 2.75953 3.09766 3.38842 3.41149 3.43708 3.61328 3.91771 4.09633 4.21834 4.35486 4.48948 4.69569 4.75897 4.89657 5.04871 5.07790 5.24853 5.29028 5.33625 5.39563 5.51454 5.62893 5.78063 5.84939 5.91883 6.03368 6.06177 6.19512 6.26459 6.36908 6.66135 6.76838 7.01207 7.13556 7.92432 7.97281 8.33253 8.68762 8.81018 9.51757 10.92650 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.006406 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.825024 B = 4369.619080 C = 5963.459454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.108 4.108 5 C -0.138 4.138 6 C -0.191 4.191 7 H 0.115 0.885 8 C 0.543 3.457 9 O -0.516 6.516 10 N -0.590 5.590 11 C 0.234 3.766 12 C -0.611 4.611 13 H 0.053 0.947 14 C 0.022 3.978 15 N -0.905 5.905 16 Si 1.072 2.928 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.287 1.287 20 C 0.076 3.924 21 C 0.428 3.572 22 F -0.181 7.181 23 F -0.189 7.189 24 F -0.178 7.178 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.268 0.732 38 H 0.112 0.888 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -12.313 10.633 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.165 4.165 5 C -0.175 4.175 6 C -0.212 4.212 7 H 0.133 0.867 8 C 0.330 3.670 9 O -0.391 6.391 10 N -0.321 5.321 11 C 0.115 3.885 12 C -0.650 4.650 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.541 5.541 16 Si 0.899 3.101 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.052 4.052 21 C 0.372 3.628 22 F -0.163 7.163 23 F -0.170 7.170 24 F -0.160 7.160 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.810 -11.286 8.853 15.476 hybrid contribution -0.144 -0.603 1.838 1.939 sum -5.954 -11.890 10.690 17.061 Atomic orbital electron populations 1.21819 0.95411 1.01181 1.02322 1.21077 0.96146 0.93267 1.01868 1.21598 0.91058 0.96794 0.99824 1.21454 0.96967 0.97283 1.00766 1.23109 1.01399 1.02608 0.90389 1.22451 0.95856 0.99454 1.03417 0.86678 1.19526 0.81857 0.85196 0.80398 1.90686 1.55683 1.48486 1.44219 1.47945 1.04866 1.29387 1.49922 1.19523 0.94310 0.83257 0.91445 1.22200 1.48020 0.99173 0.95600 0.92895 1.25812 0.93822 0.93449 1.05187 1.70803 1.45094 1.17664 1.20528 0.83503 0.76450 0.75512 0.74598 1.20607 1.21393 1.21389 1.22588 1.00107 0.95854 0.86641 1.21669 0.73773 0.76187 0.91200 1.93183 1.43559 1.96314 1.83213 1.93150 1.70115 1.70869 1.82903 1.93205 1.86215 1.39693 1.96844 0.93000 0.92601 0.91911 0.91532 0.91872 0.91296 0.92856 0.91841 0.88294 0.88489 0.95322 0.94403 0.92129 0.86968 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.92 37.16 0.33 -1.07 16 2 C -0.09 -0.91 6.12 -26.73 -0.16 -1.07 16 3 C -0.09 -1.24 2.47 -154.51 -0.38 -1.62 16 4 C -0.11 -1.63 7.73 37.16 0.29 -1.35 16 5 C -0.14 -1.80 7.95 -26.73 -0.21 -2.01 16 6 C -0.19 -2.86 4.13 -91.77 -0.38 -3.24 16 7 H 0.12 1.46 6.44 -51.93 -0.33 1.12 16 8 C 0.54 10.94 7.10 -10.98 -0.08 10.86 16 9 O -0.52 -12.29 12.68 5.56 0.07 -12.22 16 10 N -0.59 -12.07 2.37 -175.05 -0.42 -12.49 16 11 C 0.23 5.90 4.27 -5.19 -0.02 5.88 16 12 C -0.61 -16.96 9.39 -34.44 -0.32 -17.28 16 13 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16 14 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 15 N -0.91 -27.26 13.65 55.43 0.76 -26.50 16 16 Si 1.07 25.09 29.90 -169.99 -5.08 20.01 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.08 1.18 5.33 -4.04 -0.02 1.16 16 21 C 0.43 6.53 3.29 37.16 0.12 6.65 16 22 F -0.18 -2.75 14.28 2.25 0.03 -2.71 16 23 F -0.19 -2.60 17.32 2.25 0.04 -2.56 16 24 F -0.18 -3.18 16.23 2.25 0.04 -3.14 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.61 6.45 -51.93 -0.33 0.28 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 30 H 0.07 1.21 7.26 -51.93 -0.38 0.83 16 31 H 0.05 0.66 5.59 -51.93 -0.29 0.37 16 32 H 0.06 1.08 7.01 -51.93 -0.36 0.71 16 33 H 0.10 1.06 8.05 -51.93 -0.42 0.65 16 34 H 0.10 1.40 8.05 -51.93 -0.42 0.98 16 35 H 0.03 0.73 7.12 -51.93 -0.37 0.36 16 36 H 0.04 1.08 7.29 -51.93 -0.38 0.70 16 37 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 38 H 0.11 1.37 5.99 -51.93 -0.31 1.06 16 39 H 0.13 1.92 8.07 -51.93 -0.42 1.50 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -31.83 324.60 -5.80 -37.63 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.19 Total: -0.36 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.94 Total: -2.55 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.34 Total: -38.99 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.11 Total: -8.41 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.83 -5.80 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133731389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.620 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds