Wall clock time and date at job start Tue Mar 31 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 C 1.53000 * 115.56456 * 325.68578 * 3 2 1 5 5 C 1.53002 * 117.49842 * 111.38174 * 3 2 1 6 6 C 1.52996 * 60.00193 * 107.48649 * 5 3 2 7 7 H 1.09001 * 117.51994 * 252.52012 * 6 5 3 8 8 C 1.50699 * 117.50185 * 107.48729 * 6 5 3 9 9 O 1.21276 * 120.00018 * 291.38271 * 8 6 5 10 10 N 1.34780 * 120.00043 * 111.37627 * 8 6 5 11 11 C 1.46493 * 120.00248 * 180.02562 * 10 8 6 12 12 C 1.50706 * 109.47128 * 269.99866 * 11 10 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.46507 * 119.99687 * 0.02562 * 10 8 6 21 21 C 1.53002 * 109.47219 * 269.99856 * 20 10 8 22 22 F 1.39903 * 109.46592 * 60.00182 * 21 20 10 23 23 F 1.39893 * 109.47282 * 180.02562 * 21 20 10 24 24 F 1.39905 * 109.46932 * 300.00183 * 21 20 10 25 25 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47268 * 299.99533 * 1 2 3 27 27 H 1.08996 * 109.46983 * 60.00168 * 1 2 3 28 28 H 1.09002 * 109.47071 * 239.99957 * 2 1 3 29 29 H 1.09003 * 109.47386 * 119.99878 * 2 1 3 30 30 H 1.08997 * 109.47124 * 274.31731 * 4 3 2 31 31 H 1.09005 * 109.46848 * 34.31270 * 4 3 2 32 32 H 1.08994 * 109.47225 * 154.31365 * 4 3 2 33 33 H 1.08999 * 117.50093 * 359.97438 * 5 3 2 34 34 H 1.08998 * 117.49512 * 214.97531 * 5 3 2 35 35 H 1.09001 * 109.47786 * 150.00138 * 11 10 8 36 36 H 1.09006 * 109.47401 * 29.99724 * 11 10 8 37 37 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 38 38 H 1.08994 * 109.46878 * 30.00015 * 20 10 8 39 39 H 1.09002 * 109.46817 * 150.00396 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1851 2.4449 -0.7781 5 6 2.7419 1.9437 1.2638 6 6 3.5549 1.6562 0.0000 7 1 4.1883 0.7691 -0.0004 8 6 4.0909 2.8379 -0.7664 9 8 3.3286 3.5767 -1.3527 10 7 5.4175 3.0737 -0.8001 11 6 5.9386 4.2227 -1.5447 12 6 6.2310 3.8106 -2.9645 13 1 6.0474 2.7942 -3.2804 14 6 6.7328 4.7309 -3.8600 15 7 6.9568 5.9684 -3.4752 16 14 7.0958 4.2198 -5.6197 17 1 7.6228 5.3848 -6.3748 18 1 8.1056 3.1309 -5.6206 19 1 5.8472 3.7375 -6.2627 20 6 6.3384 2.1809 -0.0922 21 6 6.5436 2.6885 1.3365 22 9 5.3140 2.7142 2.0033 23 9 7.4234 1.8363 2.0124 24 9 7.0814 3.9795 1.3000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.4775 2.4339 -1.8280 31 1 0.1338 2.1707 -0.6908 32 1 1.3350 3.4443 -0.3697 33 1 2.8400 1.2459 2.0953 34 1 2.5946 2.9875 1.5408 35 1 6.8555 4.5760 -1.0729 36 1 5.1979 5.0225 -1.5437 37 1 6.7686 6.2337 -2.5613 38 1 5.9194 1.1751 -0.0637 39 1 7.2965 2.1609 -0.6117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133731389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:41 Heat of formation + Delta-G solvation = -191.680053 kcal Electronic energy + Delta-G solvation = -25277.159943 eV Core-core repulsion = 21190.690798 eV Total energy + Delta-G solvation = -4086.469145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.10694 -48.63258 -48.58920 -41.42833 -38.78855 -36.98947 -35.15119 -33.08414 -30.82813 -29.37361 -28.54152 -25.97024 -24.72357 -24.68224 -23.75516 -20.75289 -19.72647 -19.62013 -19.44099 -19.23908 -18.38100 -17.75289 -17.04345 -16.14439 -15.81275 -15.67134 -15.54161 -15.44220 -15.39390 -15.06739 -15.00362 -14.76651 -14.72897 -14.44007 -14.03280 -13.92503 -13.63186 -13.37401 -13.30445 -13.27233 -13.03329 -13.00666 -12.56973 -12.49905 -12.01048 -11.96235 -11.65017 -11.30389 -11.03871 -10.80125 -10.63133 -10.42295 -9.76893 -8.72202 -6.47789 1.35906 1.50031 1.58815 1.70762 1.78506 1.96187 2.52892 2.74122 2.84411 2.98290 3.06287 3.14005 3.52452 3.64207 3.78484 3.91831 4.07986 4.11473 4.25234 4.46968 4.52948 4.66847 4.75976 4.82939 4.85514 4.90164 4.95567 5.01698 5.13542 5.20989 5.30942 5.34130 5.43963 5.59969 5.76026 6.09433 6.36926 6.41770 7.17386 7.33689 8.63954 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.006406 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.825024 B = 4369.619080 C = 5963.459454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.104 4.104 5 C -0.121 4.121 6 C -0.199 4.199 7 H 0.149 0.851 8 C 0.532 3.468 9 O -0.567 6.567 10 N -0.598 5.598 11 C 0.248 3.752 12 C -0.617 4.617 13 H 0.052 0.948 14 C -0.030 4.030 15 N -0.931 5.931 16 Si 1.119 2.881 17 H -0.282 1.282 18 H -0.259 1.259 19 H -0.280 1.280 20 C 0.072 3.928 21 C 0.435 3.565 22 F -0.178 7.178 23 F -0.174 7.174 24 F -0.198 7.198 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.023 0.977 36 H -0.006 1.006 37 H 0.254 0.746 38 H 0.156 0.844 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -15.740 11.488 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.220 4.220 7 H 0.167 0.833 8 C 0.322 3.678 9 O -0.445 6.445 10 N -0.328 5.328 11 C 0.127 3.873 12 C -0.655 4.655 13 H 0.071 0.929 14 C -0.228 4.228 15 N -0.567 5.567 16 Si 0.940 3.060 17 H -0.208 1.208 18 H -0.183 1.183 19 H -0.206 1.206 20 C -0.053 4.053 21 C 0.379 3.621 22 F -0.160 7.160 23 F -0.156 7.156 24 F -0.180 7.180 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.012 0.988 37 H 0.064 0.936 38 H 0.173 0.827 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.901 -14.756 9.761 18.650 hybrid contribution -0.161 0.489 1.635 1.714 sum -6.062 -14.267 11.395 19.239 Atomic orbital electron populations 1.21819 0.94622 1.02330 1.01999 1.21115 0.96795 0.90752 1.03119 1.21754 0.89566 0.98274 0.99494 1.21353 0.99123 0.96676 0.98905 1.23202 0.99459 1.02464 0.90713 1.22475 0.97253 0.98035 1.04235 0.83320 1.20546 0.81221 0.86079 0.79936 1.90666 1.56846 1.50586 1.46420 1.47869 1.06067 1.28895 1.50005 1.18975 0.92636 0.84232 0.91446 1.22500 1.47174 0.99053 0.96781 0.92937 1.27356 0.93261 0.92960 1.09267 1.70929 1.47051 1.18911 1.19839 0.82919 0.77284 0.75985 0.69862 1.20750 1.18316 1.20568 1.22905 0.99646 0.96675 0.86118 1.21479 0.73932 0.75485 0.91190 1.93188 1.43413 1.96252 1.83130 1.93182 1.69638 1.70186 1.82546 1.93175 1.86553 1.41314 1.96937 0.91147 0.92210 0.92985 0.91455 0.89373 0.94474 0.90247 0.94741 0.84587 0.90505 0.95935 0.98828 0.93650 0.82666 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.92 71.98 0.64 -1.67 16 2 C -0.08 -1.39 6.12 30.59 0.19 -1.21 16 3 C -0.09 -2.25 2.47 -52.18 -0.13 -2.37 16 4 C -0.10 -3.19 7.73 71.98 0.56 -2.63 16 5 C -0.12 -2.85 7.95 30.59 0.24 -2.60 16 6 C -0.20 -5.53 4.13 -11.54 -0.05 -5.58 16 7 H 0.15 3.09 6.44 -2.39 -0.02 3.07 16 8 C 0.53 21.66 7.10 87.66 0.62 22.29 16 9 O -0.57 -28.47 12.68 -3.02 -0.04 -28.51 16 10 N -0.60 -24.64 2.37 -826.14 -1.96 -26.60 16 11 C 0.25 13.10 4.27 85.64 0.37 13.46 16 12 C -0.62 -34.91 9.39 25.60 0.24 -34.67 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 14 C -0.03 -1.73 5.46 84.65 0.46 -1.27 16 15 N -0.93 -57.81 13.65 21.45 0.29 -57.52 16 16 Si 1.12 50.35 29.90 68.60 2.05 52.41 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 C 0.07 2.12 5.33 86.38 0.46 2.58 16 21 C 0.44 12.53 3.29 71.98 0.24 12.76 16 22 F -0.18 -5.03 14.28 44.97 0.64 -4.39 16 23 F -0.17 -4.30 17.32 44.97 0.78 -3.52 16 24 F -0.20 -7.08 16.23 44.97 0.73 -6.35 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.90 6.45 -2.39 -0.02 0.89 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.14 7.90 -2.39 -0.02 1.12 16 30 H 0.04 1.35 7.26 -2.39 -0.02 1.34 16 31 H 0.08 1.95 5.59 -2.38 -0.01 1.93 16 32 H 0.03 1.22 7.01 -2.39 -0.02 1.21 16 33 H 0.14 2.24 8.05 -2.39 -0.02 2.22 16 34 H 0.08 2.15 8.05 -2.39 -0.02 2.13 16 35 H 0.02 1.21 7.12 -2.39 -0.02 1.19 16 36 H -0.01 -0.39 7.29 -2.38 -0.02 -0.40 16 37 H 0.25 16.08 7.22 -92.71 -0.67 15.42 16 38 H 0.16 3.16 5.99 -2.39 -0.01 3.15 16 39 H 0.13 3.72 8.07 -2.39 -0.02 3.70 16 Total: -1.00 -73.33 324.60 7.50 -65.83 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.17 Total: 9.57 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 3.84 Total: -0.91 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.67 Total: -84.12 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.04 Total: -28.51 kcal Atomic # 9 Polarization: -16.41 SS G_CDS: 2.15 Total: -14.26 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Total: -73.33 7.50 -65.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133731389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.848 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds