Wall clock time and date at job start Tue Mar 31 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47081 * 2 1 4 4 C 1.52997 * 115.56281 * 34.31308 * 3 2 1 5 5 C 1.53006 * 117.50206 * 248.62404 * 3 2 1 6 6 C 1.53001 * 117.49955 * 180.02562 * 3 2 1 7 7 H 1.09005 * 117.51958 * 0.02562 * 6 3 2 8 8 C 1.50706 * 117.49976 * 214.97989 * 6 3 2 9 9 O 1.21279 * 119.99846 * 359.97438 * 8 6 3 10 10 N 1.34774 * 119.99891 * 179.97438 * 8 6 3 11 11 C 1.46504 * 119.99721 * 180.02562 * 10 8 6 12 12 C 1.50698 * 109.46665 * 269.99524 * 11 10 8 13 13 H 1.07996 * 120.00566 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99641 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99888 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99672 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47334 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46676 * 120.00243 * 16 14 12 19 19 H 1.48493 * 109.47153 * 240.00194 * 16 14 12 20 20 C 1.46500 * 120.00273 * 359.97438 * 10 8 6 21 21 C 1.52997 * 109.47473 * 270.00246 * 20 10 8 22 22 F 1.39905 * 109.47157 * 59.99740 * 21 20 10 23 23 F 1.39900 * 109.47010 * 300.00131 * 21 20 10 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 20 10 25 25 H 1.08994 * 109.47280 * 299.99444 * 1 2 3 26 26 H 1.08998 * 109.47084 * 60.00028 * 1 2 3 27 27 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47239 * 240.00288 * 2 1 3 29 29 H 1.09003 * 109.47763 * 120.00175 * 2 1 3 30 30 H 1.09002 * 109.47544 * 205.68657 * 4 3 2 31 31 H 1.08998 * 109.47229 * 325.69003 * 4 3 2 32 32 H 1.09007 * 109.47125 * 85.68370 * 4 3 2 33 33 H 1.08995 * 117.49943 * 145.01844 * 5 3 2 34 34 H 1.09004 * 117.51581 * 359.97438 * 5 3 2 35 35 H 1.09001 * 109.47192 * 29.99807 * 11 10 8 36 36 H 1.08999 * 109.47048 * 150.00321 * 11 10 8 37 37 H 0.97003 * 119.99289 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47129 * 149.99989 * 20 10 8 39 39 H 1.09001 * 109.46596 * 30.00344 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4449 0.7780 5 6 2.7418 1.9437 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1887 0.7693 -0.0014 8 6 4.0914 2.8378 0.7657 9 8 3.3292 3.5768 1.3521 10 7 5.4179 3.0732 0.7993 11 6 5.9394 4.2216 1.5447 12 6 6.0045 5.4224 0.6364 13 1 5.6887 5.3386 -0.3929 14 6 6.4663 6.6282 1.1199 15 7 6.8505 6.7303 2.3735 16 14 6.5464 8.1168 -0.0058 17 1 6.0601 7.7417 -1.3579 18 1 5.6919 9.1998 0.5442 19 1 7.9500 8.5925 -0.0984 20 6 6.3386 2.1802 0.0914 21 6 6.7744 1.0509 1.0271 22 9 5.6502 0.3286 1.4414 23 9 7.4179 1.5935 2.1446 24 9 7.6531 0.1979 0.3509 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.3351 3.4443 0.3697 31 1 0.1339 2.1707 0.6908 32 1 1.4776 2.4338 1.8281 33 1 2.5946 2.9875 -1.5409 34 1 2.8408 1.2459 -2.0953 35 1 5.2812 4.4378 2.3863 36 1 6.9385 3.9914 1.9146 37 1 7.1750 7.5788 2.7137 38 1 7.2145 2.7430 -0.2314 39 1 5.8372 1.7576 -0.7793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133731562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:43 Heat of formation + Delta-G solvation = -172.035950 kcal Electronic energy + Delta-G solvation = -25189.015510 eV Core-core repulsion = 21103.398198 eV Total energy + Delta-G solvation = -4085.617313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.83618 -47.39942 -47.26539 -39.92135 -37.38824 -35.20482 -32.83207 -32.11008 -29.30868 -28.07021 -27.10555 -24.42577 -23.72058 -23.27352 -21.99558 -19.22295 -18.51507 -18.26575 -18.04481 -17.44085 -16.58539 -16.04620 -15.36214 -14.97869 -14.57437 -14.36196 -14.23715 -14.15173 -14.04928 -13.75659 -13.55061 -13.44243 -13.23051 -12.95592 -12.44824 -12.35843 -12.19129 -12.11928 -12.00586 -11.85739 -11.53345 -11.29486 -11.03561 -10.95156 -10.75086 -10.67774 -10.22462 -9.93198 -9.72550 -9.55801 -8.84330 -8.50040 -7.99270 -6.10854 -4.16462 2.79975 3.20079 3.26165 3.34045 3.36477 3.48766 3.92605 4.18530 4.27143 4.39132 4.42882 4.76809 4.81133 4.95624 5.09108 5.19568 5.24169 5.30330 5.36015 5.46915 5.58079 5.66331 5.79451 5.88672 5.96094 6.07959 6.11168 6.24273 6.30465 6.41002 6.81796 6.89083 7.30146 7.37223 7.84208 8.11312 8.13815 8.79142 8.93051 9.48923 10.97514 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.006229 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.082569 B = 4494.362243 C = 5988.247680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.090 4.090 4 C -0.108 4.108 5 C -0.150 4.150 6 C -0.196 4.196 7 H 0.121 0.879 8 C 0.542 3.458 9 O -0.515 6.515 10 N -0.594 5.594 11 C 0.242 3.758 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.076 3.924 21 C 0.427 3.573 22 F -0.185 7.185 23 F -0.175 7.175 24 F -0.189 7.189 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.128 0.872 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -14.299 -6.721 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.187 4.187 6 C -0.217 4.217 7 H 0.138 0.862 8 C 0.330 3.670 9 O -0.391 6.391 10 N -0.326 5.326 11 C 0.124 3.876 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.052 4.052 21 C 0.370 3.630 22 F -0.167 7.167 23 F -0.156 7.156 24 F -0.170 7.170 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.626 -13.741 -6.212 16.095 hybrid contribution 0.556 0.584 -0.409 0.904 sum -5.071 -13.157 -6.621 15.578 Atomic orbital electron populations 1.21820 0.95463 1.01132 1.02311 1.21076 0.96051 0.93338 1.01903 1.21531 0.91173 0.96681 0.99643 1.21457 0.96886 0.97483 1.00648 1.23181 1.02196 1.02801 0.90511 1.22643 0.96045 0.99948 1.03102 0.86159 1.19520 0.82034 0.84722 0.80747 1.90683 1.55625 1.48402 1.44346 1.48155 1.04745 1.28044 1.51627 1.19491 0.95121 0.80902 0.92063 1.21417 1.43598 0.94540 0.97388 0.92240 1.24935 0.95080 0.98769 0.95180 1.69947 1.43097 1.25967 1.13942 0.86429 0.77607 0.82583 0.80712 1.19788 1.20852 1.20906 1.22581 0.99151 0.90223 0.93238 1.21768 0.74949 0.84215 0.82027 1.93127 1.52057 1.80129 1.91388 1.93219 1.82102 1.85431 1.54862 1.93151 1.70538 1.73355 1.80005 0.91945 0.92590 0.93046 0.91901 0.91530 0.91572 0.92934 0.91456 0.88180 0.88288 0.93350 0.94247 0.92641 0.85436 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.92 37.16 0.33 -1.09 16 2 C -0.09 -0.93 6.12 -26.73 -0.16 -1.10 16 3 C -0.09 -1.22 2.47 -154.51 -0.38 -1.60 16 4 C -0.11 -1.64 7.73 37.16 0.29 -1.35 16 5 C -0.15 -1.95 9.52 -26.75 -0.25 -2.20 16 6 C -0.20 -2.98 4.17 -91.79 -0.38 -3.36 16 7 H 0.12 1.63 5.31 -51.93 -0.28 1.36 16 8 C 0.54 10.94 7.10 -10.98 -0.08 10.86 16 9 O -0.52 -12.25 12.69 5.56 0.07 -12.18 16 10 N -0.59 -12.13 2.37 -175.06 -0.42 -12.54 16 11 C 0.24 6.15 4.95 -5.19 -0.03 6.12 16 12 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.08 1.18 5.22 -4.04 -0.02 1.16 16 21 C 0.43 6.54 3.29 37.16 0.12 6.66 16 22 F -0.19 -2.88 14.56 2.25 0.03 -2.84 16 23 F -0.17 -3.15 16.22 2.25 0.04 -3.11 16 24 F -0.19 -2.59 17.32 2.25 0.04 -2.56 16 25 H 0.06 0.61 6.45 -51.93 -0.33 0.28 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.60 7.90 -51.92 -0.41 0.19 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.14 7.01 -51.93 -0.36 0.78 16 31 H 0.05 0.66 5.59 -51.93 -0.29 0.37 16 32 H 0.07 1.16 7.26 -51.93 -0.38 0.78 16 33 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 34 H 0.10 1.01 8.05 -51.93 -0.42 0.60 16 35 H 0.05 1.40 7.42 -51.93 -0.39 1.01 16 36 H 0.04 1.02 7.25 -51.93 -0.38 0.65 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.13 1.90 8.07 -51.93 -0.42 1.48 16 39 H 0.11 1.37 6.64 -51.93 -0.34 1.03 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -30.96 327.20 -5.80 -36.77 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.23 Total: -0.44 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.99 Total: 0.94 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.32 Total: -37.84 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 0.11 Total: -8.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.96 -5.80 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133731562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.270 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds