Wall clock time and date at job start Tue Mar 31 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47081 * 2 1 4 4 C 1.52997 * 115.56281 * 34.31308 * 3 2 1 5 5 C 1.53006 * 117.50206 * 248.62404 * 3 2 1 6 6 C 1.53001 * 117.49955 * 180.02562 * 3 2 1 7 7 H 1.09005 * 117.51958 * 0.02562 * 6 3 2 8 8 C 1.50706 * 117.49976 * 214.97989 * 6 3 2 9 9 O 1.21279 * 119.99846 * 359.97438 * 8 6 3 10 10 N 1.34774 * 119.99891 * 179.97438 * 8 6 3 11 11 C 1.46504 * 119.99721 * 180.02562 * 10 8 6 12 12 C 1.50698 * 109.46665 * 269.99524 * 11 10 8 13 13 H 1.07996 * 120.00566 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99641 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99888 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99672 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47334 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46676 * 120.00243 * 16 14 12 19 19 H 1.48493 * 109.47153 * 240.00194 * 16 14 12 20 20 C 1.46500 * 120.00273 * 359.97438 * 10 8 6 21 21 C 1.52997 * 109.47473 * 270.00246 * 20 10 8 22 22 F 1.39905 * 109.47157 * 59.99740 * 21 20 10 23 23 F 1.39900 * 109.47010 * 300.00131 * 21 20 10 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 20 10 25 25 H 1.08994 * 109.47280 * 299.99444 * 1 2 3 26 26 H 1.08998 * 109.47084 * 60.00028 * 1 2 3 27 27 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47239 * 240.00288 * 2 1 3 29 29 H 1.09003 * 109.47763 * 120.00175 * 2 1 3 30 30 H 1.09002 * 109.47544 * 205.68657 * 4 3 2 31 31 H 1.08998 * 109.47229 * 325.69003 * 4 3 2 32 32 H 1.09007 * 109.47125 * 85.68370 * 4 3 2 33 33 H 1.08995 * 117.49943 * 145.01844 * 5 3 2 34 34 H 1.09004 * 117.51581 * 359.97438 * 5 3 2 35 35 H 1.09001 * 109.47192 * 29.99807 * 11 10 8 36 36 H 1.08999 * 109.47048 * 150.00321 * 11 10 8 37 37 H 0.97003 * 119.99289 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47129 * 149.99989 * 20 10 8 39 39 H 1.09001 * 109.46596 * 30.00344 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4449 0.7780 5 6 2.7418 1.9437 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1887 0.7693 -0.0014 8 6 4.0914 2.8378 0.7657 9 8 3.3292 3.5768 1.3521 10 7 5.4179 3.0732 0.7993 11 6 5.9394 4.2216 1.5447 12 6 6.0045 5.4224 0.6364 13 1 5.6887 5.3386 -0.3929 14 6 6.4663 6.6282 1.1199 15 7 6.8505 6.7303 2.3735 16 14 6.5464 8.1168 -0.0058 17 1 6.0601 7.7417 -1.3579 18 1 5.6919 9.1998 0.5442 19 1 7.9500 8.5925 -0.0984 20 6 6.3386 2.1802 0.0914 21 6 6.7744 1.0509 1.0271 22 9 5.6502 0.3286 1.4414 23 9 7.4179 1.5935 2.1446 24 9 7.6531 0.1979 0.3509 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.3351 3.4443 0.3697 31 1 0.1339 2.1707 0.6908 32 1 1.4776 2.4338 1.8281 33 1 2.5946 2.9875 -1.5409 34 1 2.8408 1.2459 -2.0953 35 1 5.2812 4.4378 2.3863 36 1 6.9385 3.9914 1.9146 37 1 7.1750 7.5788 2.7137 38 1 7.2145 2.7430 -0.2314 39 1 5.8372 1.7576 -0.7793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133731562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:42 Heat of formation + Delta-G solvation = -189.594648 kcal Electronic energy + Delta-G solvation = -25189.776913 eV Core-core repulsion = 21103.398198 eV Total energy + Delta-G solvation = -4086.378715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.10255 -48.62507 -48.58512 -41.34026 -38.69984 -36.85022 -34.86882 -33.06958 -30.93272 -29.42852 -28.69028 -26.06579 -24.66810 -24.60834 -23.59691 -20.55404 -19.71286 -19.54350 -19.35621 -18.96947 -18.38022 -17.62403 -16.97606 -16.27781 -16.10052 -15.57793 -15.49980 -15.48764 -15.35374 -15.01881 -14.83915 -14.73262 -14.67429 -14.40698 -13.96140 -13.67809 -13.61519 -13.32651 -13.22677 -13.14032 -12.97397 -12.90827 -12.61267 -12.56514 -12.20062 -11.97817 -11.74950 -11.61972 -11.01106 -10.74297 -10.65792 -10.35666 -9.75167 -8.24315 -6.38795 1.37476 1.39371 1.41426 1.51218 1.82877 2.01089 2.38857 2.73339 2.92848 3.02559 3.06391 3.17953 3.58141 3.69043 3.86814 4.00733 4.11764 4.16799 4.35160 4.48467 4.56079 4.78092 4.86010 4.88886 4.94271 5.00512 5.07946 5.15715 5.19078 5.23722 5.36468 5.42703 5.46724 5.63488 5.73329 6.00853 6.48406 6.70604 7.23030 7.36781 8.84108 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.006229 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.082569 B = 4494.362243 C = 5988.247680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.104 4.104 5 C -0.128 4.128 6 C -0.206 4.206 7 H 0.144 0.856 8 C 0.532 3.468 9 O -0.565 6.565 10 N -0.602 5.602 11 C 0.261 3.739 12 C -0.541 4.541 13 H 0.060 0.940 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.969 3.031 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.073 3.927 21 C 0.433 3.567 22 F -0.185 7.185 23 F -0.195 7.195 24 F -0.173 7.173 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.142 0.858 35 H -0.001 1.001 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.134 0.866 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 -16.040 -9.595 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.160 4.160 5 C -0.165 4.165 6 C -0.227 4.227 7 H 0.162 0.838 8 C 0.322 3.678 9 O -0.444 6.444 10 N -0.332 5.332 11 C 0.140 3.860 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.053 4.053 21 C 0.377 3.623 22 F -0.166 7.166 23 F -0.177 7.177 24 F -0.155 7.155 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.017 0.983 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.923 -15.529 -9.113 18.955 hybrid contribution 0.629 1.092 0.533 1.368 sum -5.294 -14.437 -8.581 17.609 Atomic orbital electron populations 1.21814 0.94503 1.02290 1.02079 1.21111 0.96852 0.90941 1.02954 1.21703 0.89613 0.98134 0.99741 1.21354 0.99023 0.96775 0.98887 1.23320 0.99530 1.02919 0.90728 1.22584 0.97335 0.98286 1.04459 0.83833 1.20489 0.81436 0.85597 0.80270 1.90663 1.56778 1.50553 1.46410 1.48039 1.05919 1.27632 1.51656 1.18883 0.93288 0.82750 0.91080 1.21695 1.43237 0.95472 0.97535 0.92146 1.25864 0.94607 1.01951 0.96638 1.70075 1.44001 1.26897 1.15833 0.85343 0.78040 0.78393 0.78873 1.18719 1.21070 1.19591 1.22898 0.98953 0.89617 0.93827 1.21608 0.74974 0.84334 0.81337 1.93129 1.52039 1.80054 1.91405 1.93188 1.82531 1.85853 1.56083 1.93184 1.70024 1.72777 1.79508 0.92975 0.92041 0.91232 0.89399 0.91887 0.94510 0.90300 0.94501 0.89947 0.83996 0.98278 0.95379 0.92421 0.84818 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.92 71.98 0.64 -1.72 16 2 C -0.08 -1.48 6.12 30.59 0.19 -1.29 16 3 C -0.09 -2.32 2.47 -52.18 -0.13 -2.45 16 4 C -0.10 -3.20 7.73 71.98 0.56 -2.64 16 5 C -0.13 -2.93 9.52 30.58 0.29 -2.64 16 6 C -0.21 -5.87 4.17 -11.55 -0.05 -5.92 16 7 H 0.14 3.40 5.31 -2.38 -0.01 3.39 16 8 C 0.53 21.83 7.10 87.66 0.62 22.45 16 9 O -0.57 -28.45 12.69 -3.03 -0.04 -28.48 16 10 N -0.60 -24.91 2.37 -826.14 -1.96 -26.88 16 11 C 0.26 13.84 4.95 85.63 0.42 14.27 16 12 C -0.54 -30.24 9.39 25.60 0.24 -30.00 16 13 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 14 C 0.01 0.49 5.46 84.66 0.46 0.95 16 15 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 16 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.07 2.15 5.22 86.38 0.45 2.60 16 21 C 0.43 12.69 3.29 71.98 0.24 12.93 16 22 F -0.18 -5.43 14.56 44.97 0.65 -4.77 16 23 F -0.19 -7.07 16.22 44.97 0.73 -6.34 16 24 F -0.17 -4.33 17.32 44.97 0.78 -3.55 16 25 H 0.05 0.92 6.45 -2.39 -0.02 0.90 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 1.20 7.90 -2.38 -0.02 1.18 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.32 7.01 -2.39 -0.02 1.30 16 31 H 0.08 1.94 5.59 -2.39 -0.01 1.93 16 32 H 0.04 1.34 7.26 -2.38 -0.02 1.32 16 33 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 34 H 0.14 2.09 8.05 -2.38 -0.02 2.07 16 35 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 36 H 0.03 1.54 7.25 -2.39 -0.02 1.52 16 37 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.13 3.79 8.07 -2.39 -0.02 3.77 16 39 H 0.15 3.22 6.64 -2.39 -0.02 3.21 16 Total: -1.00 -71.23 327.20 7.48 -63.75 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.07 Total: 9.20 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 3.94 Total: 6.54 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.68 Total: -82.47 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.04 Total: -28.48 kcal Atomic # 9 Polarization: -16.83 SS G_CDS: 2.16 Total: -14.66 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -71.23 7.48 -63.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133731562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.841 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds