Wall clock time and date at job start Tue Mar 31 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 C 1.50701 * 109.46697 * 119.99732 * 2 1 3 5 5 N 1.29030 * 124.92093 * 300.02071 * 4 2 1 6 6 C 1.31774 * 117.12910 * 179.97438 * 5 4 2 7 7 C 1.33643 * 114.50021 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.04097 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.46675 * 90.02822 * 8 7 6 10 10 C 1.46903 * 110.99917 * 190.00175 * 9 8 7 11 11 C 1.50699 * 109.47218 * 169.16839 * 10 9 8 12 12 H 1.08003 * 119.99924 * 354.96887 * 11 10 9 13 13 C 1.37874 * 119.99984 * 174.96762 * 11 10 9 14 14 N 1.31511 * 120.00197 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00188 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46857 * 89.99831 * 15 13 11 17 17 H 1.48494 * 109.47439 * 210.00594 * 15 13 11 18 18 H 1.48504 * 109.46858 * 330.00362 * 15 13 11 19 19 C 1.46889 * 111.00221 * 66.04887 * 9 8 7 20 20 C 1.52998 * 109.47348 * 62.06732 * 19 9 8 21 21 C 1.47198 * 109.47503 * 179.85905 * 20 19 9 22 22 N 7.16225 * 104.25179 * 178.53894 * 2 1 3 23 23 S 1.70980 * 124.91504 * 119.72534 * 4 2 1 24 24 H 1.09007 * 109.46682 * 300.00322 * 1 2 3 25 25 H 1.08999 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46872 * 60.00086 * 1 2 3 27 27 H 1.08996 * 109.47087 * 239.99564 * 2 1 3 28 28 H 1.09001 * 109.46755 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47180 * 299.99725 * 3 2 1 30 30 H 1.08996 * 109.47499 * 59.99816 * 3 2 1 31 31 H 1.07995 * 122.75399 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47517 * 210.02700 * 8 7 6 33 33 H 1.08996 * 109.47207 * 330.03326 * 8 7 6 34 34 H 1.08999 * 109.47167 * 289.17242 * 10 9 8 35 35 H 1.09002 * 109.46893 * 49.17005 * 10 9 8 36 36 H 0.97000 * 120.00566 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.47462 * 182.07162 * 19 9 8 38 38 H 1.08998 * 109.47315 * 302.06791 * 19 9 8 39 39 H 1.09001 * 109.47170 * 299.86647 * 20 19 9 40 40 H 1.09007 * 109.47030 * 59.86114 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7794 -0.3534 2.4444 6 6 2.2983 -1.0882 3.4073 7 6 3.0293 -2.1230 2.9821 8 6 3.7384 -3.1260 3.8553 9 7 2.8378 -4.2514 4.1388 10 6 3.4020 -5.1297 5.1724 11 6 2.3517 -6.1103 5.6265 12 1 1.3420 -6.0325 5.2511 13 6 2.6798 -7.1069 6.5211 14 7 3.9092 -7.2013 6.9785 15 14 1.3781 -8.3229 7.0834 16 1 1.3642 -9.4918 6.1677 17 1 1.6884 -8.7779 8.4625 18 1 0.0466 -7.6655 7.0670 19 6 2.5358 -5.0054 2.9149 20 6 3.8280 -5.5973 2.3486 21 6 3.5250 -6.3557 1.1239 22 7 3.2933 -6.9396 0.1770 23 16 3.0139 -2.1103 1.2202 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 2.1455 -0.8720 4.4543 32 1 4.6266 -3.4922 3.3405 33 1 4.0311 -2.6502 4.7912 34 1 4.2534 -5.6730 4.7624 35 1 3.7290 -4.5287 6.0209 36 1 4.1400 -7.9022 7.6081 37 1 1.8384 -5.8104 3.1467 38 1 2.0885 -4.3381 2.1782 39 1 4.5245 -4.7921 2.1145 40 1 4.2767 -6.2627 3.0863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152826471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:14 Heat of formation + Delta-G solvation = 62.414685 kcal Electronic energy + Delta-G solvation = -20848.919980 eV Core-core repulsion = 17790.371572 eV Total energy + Delta-G solvation = -3058.548408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73719 -37.98806 -36.06072 -35.41252 -32.80708 -31.28554 -29.87403 -27.33600 -27.19457 -25.78424 -24.53825 -23.30432 -21.81167 -20.16371 -18.36304 -18.15295 -17.40586 -16.35807 -15.69200 -15.34012 -14.83048 -14.59327 -14.44432 -14.18711 -14.14143 -13.74886 -13.61455 -13.04945 -12.88164 -12.38312 -12.28917 -12.24880 -12.09286 -11.79222 -11.59700 -11.53177 -11.38422 -11.20139 -11.17486 -10.95883 -10.79920 -10.69063 -10.33464 -10.00194 -9.49905 -9.36307 -9.06643 -8.62082 -8.53071 -7.51185 -6.13964 -4.15775 0.84752 1.44587 1.87493 3.00256 3.04374 3.07623 3.27000 3.34367 3.38238 4.11029 4.26006 4.36330 4.70666 4.86449 4.91101 4.92872 5.13591 5.22634 5.28100 5.38176 5.39493 5.46119 5.55294 5.63340 5.67441 5.70471 5.76168 5.95093 6.02515 6.04956 6.08988 6.17600 6.39799 6.51826 7.02940 7.11809 7.64367 7.78529 7.88119 7.89207 7.97312 8.33415 8.92021 9.49837 10.96202 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.004064 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.041859 B = 6888.036414 C = 7507.628255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.015 4.015 3 C -0.138 4.138 4 C 0.042 3.958 5 N -0.467 5.467 6 C 0.044 3.956 7 C -0.190 4.190 8 C 0.119 3.881 9 N -0.520 5.520 10 C 0.186 3.814 11 C -0.511 4.511 12 H 0.065 0.935 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.067 3.933 20 C -0.074 4.074 21 C 0.224 3.776 22 N -0.457 5.457 23 S 0.098 5.902 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.176 0.824 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.007 0.993 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 14.107 -11.331 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.197 4.197 4 C -0.236 4.236 5 N -0.181 5.181 6 C -0.107 4.107 7 C -0.311 4.311 8 C -0.011 4.011 9 N -0.243 5.243 10 C 0.062 3.938 11 C -0.549 4.549 12 H 0.083 0.917 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.063 4.063 20 C -0.116 4.116 21 C -0.094 4.094 22 N -0.135 5.135 23 S 0.353 5.647 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.193 0.807 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.024 0.976 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.878 13.162 -13.084 18.579 hybrid contribution 0.160 -0.763 1.479 1.672 sum -0.718 12.399 -11.604 16.998 Atomic orbital electron populations 1.21797 0.93018 1.02420 1.02590 1.19771 0.96808 0.95883 0.91211 1.21786 1.01043 0.94242 1.02619 1.26905 1.01790 0.98039 0.96891 1.66159 1.22620 1.30682 0.98603 1.21662 0.96796 0.92463 0.99752 1.26010 1.07376 1.02925 0.94826 1.20583 0.92634 0.90751 0.97156 1.62454 1.44081 1.09811 1.07956 1.19904 0.94754 0.90627 0.88499 1.21100 0.96451 1.11655 1.25719 0.91710 1.24940 0.95430 0.97674 0.96207 1.69927 1.17943 1.33687 1.32002 0.86542 0.81996 0.81262 0.77958 1.20717 1.21233 1.19701 1.22151 0.94506 0.98036 0.91642 1.20220 1.02961 0.99075 0.89366 1.29187 0.92818 0.93212 0.94133 1.81153 1.09503 1.10455 1.12343 1.84006 1.48871 1.26791 1.04994 0.91438 0.92481 0.91929 0.89708 0.92646 0.91925 0.91468 0.80709 0.93755 0.88596 0.97556 0.94917 0.92784 0.88642 0.91828 0.88690 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 2 C -0.01 -0.14 3.35 -91.77 -0.31 -0.45 16 3 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 4 C 0.04 0.52 5.91 -13.45 -0.08 0.44 16 5 N -0.47 -6.58 10.53 -11.86 -0.12 -6.71 16 6 C 0.04 0.62 11.25 -19.19 -0.22 0.40 16 7 C -0.19 -2.64 5.32 -35.92 -0.19 -2.83 16 8 C 0.12 1.75 5.29 -4.97 -0.03 1.72 16 9 N -0.52 -9.35 4.69 -237.52 -1.11 -10.46 16 10 C 0.19 4.10 4.52 -4.97 -0.02 4.08 16 11 C -0.51 -12.88 8.39 -34.44 -0.29 -13.17 16 12 H 0.06 1.65 7.36 -52.48 -0.39 1.27 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -24.57 13.29 55.43 0.74 -23.83 16 15 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 19 C 0.07 1.12 4.90 -3.83 -0.02 1.10 16 20 C -0.07 -1.10 5.05 -29.52 -0.15 -1.25 16 21 C 0.22 3.61 15.43 -20.75 -0.32 3.29 16 22 N -0.46 -8.22 18.54 42.17 0.78 -7.44 16 23 S 0.10 1.22 21.73 -107.50 -2.34 -1.12 16 24 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.04 0.60 6.07 -51.93 -0.32 0.28 16 33 H 0.10 1.37 7.92 -51.93 -0.41 0.96 16 34 H 0.01 0.15 6.02 -51.93 -0.31 -0.16 16 35 H 0.03 0.78 7.91 -51.93 -0.41 0.36 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.10 1.78 6.97 -51.93 -0.36 1.42 16 38 H 0.06 0.99 5.97 -51.93 -0.31 0.68 16 39 H 0.10 1.21 6.33 -51.93 -0.33 0.88 16 40 H 0.12 2.03 6.29 -51.93 -0.33 1.71 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -28.47 347.04 -8.56 -37.03 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.68 Total: -1.34 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.04 Total: -6.96 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.28 Total: -48.43 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.34 Total: -1.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.47 -8.56 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152826471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.446 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds