Wall clock time and date at job start Tue Mar 31 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 C 1.50701 * 109.46697 * 119.99732 * 2 1 3 5 5 N 1.29030 * 124.92093 * 300.02071 * 4 2 1 6 6 C 1.31774 * 117.12910 * 179.97438 * 5 4 2 7 7 C 1.33643 * 114.50021 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.04097 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.46675 * 90.02822 * 8 7 6 10 10 C 1.46903 * 110.99917 * 190.00175 * 9 8 7 11 11 C 1.50699 * 109.47218 * 169.16839 * 10 9 8 12 12 H 1.08003 * 119.99924 * 354.96887 * 11 10 9 13 13 C 1.37874 * 119.99984 * 174.96762 * 11 10 9 14 14 N 1.31511 * 120.00197 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00188 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46857 * 89.99831 * 15 13 11 17 17 H 1.48494 * 109.47439 * 210.00594 * 15 13 11 18 18 H 1.48504 * 109.46858 * 330.00362 * 15 13 11 19 19 C 1.46889 * 111.00221 * 66.04887 * 9 8 7 20 20 C 1.52998 * 109.47348 * 62.06732 * 19 9 8 21 21 C 1.47198 * 109.47503 * 179.85905 * 20 19 9 22 22 N 7.16225 * 104.25179 * 178.53894 * 2 1 3 23 23 S 1.70980 * 124.91504 * 119.72534 * 4 2 1 24 24 H 1.09007 * 109.46682 * 300.00322 * 1 2 3 25 25 H 1.08999 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46872 * 60.00086 * 1 2 3 27 27 H 1.08996 * 109.47087 * 239.99564 * 2 1 3 28 28 H 1.09001 * 109.46755 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47180 * 299.99725 * 3 2 1 30 30 H 1.08996 * 109.47499 * 59.99816 * 3 2 1 31 31 H 1.07995 * 122.75399 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47517 * 210.02700 * 8 7 6 33 33 H 1.08996 * 109.47207 * 330.03326 * 8 7 6 34 34 H 1.08999 * 109.47167 * 289.17242 * 10 9 8 35 35 H 1.09002 * 109.46893 * 49.17005 * 10 9 8 36 36 H 0.97000 * 120.00566 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.47462 * 182.07162 * 19 9 8 38 38 H 1.08998 * 109.47315 * 302.06791 * 19 9 8 39 39 H 1.09001 * 109.47170 * 299.86647 * 20 19 9 40 40 H 1.09007 * 109.47030 * 59.86114 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7794 -0.3534 2.4444 6 6 2.2983 -1.0882 3.4073 7 6 3.0293 -2.1230 2.9821 8 6 3.7384 -3.1260 3.8553 9 7 2.8378 -4.2514 4.1388 10 6 3.4020 -5.1297 5.1724 11 6 2.3517 -6.1103 5.6265 12 1 1.3420 -6.0325 5.2511 13 6 2.6798 -7.1069 6.5211 14 7 3.9092 -7.2013 6.9785 15 14 1.3781 -8.3229 7.0834 16 1 1.3642 -9.4918 6.1677 17 1 1.6884 -8.7779 8.4625 18 1 0.0466 -7.6655 7.0670 19 6 2.5358 -5.0054 2.9149 20 6 3.8280 -5.5973 2.3486 21 6 3.5250 -6.3557 1.1239 22 7 3.2933 -6.9396 0.1770 23 16 3.0139 -2.1103 1.2202 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 2.1455 -0.8720 4.4543 32 1 4.6266 -3.4922 3.3405 33 1 4.0311 -2.6502 4.7912 34 1 4.2534 -5.6730 4.7624 35 1 3.7290 -4.5287 6.0209 36 1 4.1400 -7.9022 7.6081 37 1 1.8384 -5.8104 3.1467 38 1 2.0885 -4.3381 2.1782 39 1 4.5245 -4.7921 2.1145 40 1 4.2767 -6.2627 3.0863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152826471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:14 Heat of formation + Delta-G solvation = 46.202570 kcal Electronic energy + Delta-G solvation = -20849.622990 eV Core-core repulsion = 17790.371572 eV Total energy + Delta-G solvation = -3059.251418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78103 -39.35873 -37.40437 -36.28184 -34.71796 -32.48747 -31.31496 -28.70495 -28.01490 -27.02461 -25.80918 -24.80809 -22.81396 -21.58548 -19.40091 -19.22675 -18.67629 -18.21511 -17.02550 -16.50045 -16.39436 -15.73561 -15.65040 -15.27905 -15.13848 -15.07191 -14.87266 -14.40233 -13.91979 -13.72817 -13.60069 -13.52710 -13.10397 -12.99317 -12.94469 -12.84079 -12.66960 -12.50273 -12.34521 -12.14172 -12.08167 -11.95253 -11.86256 -11.54852 -11.27388 -10.54508 -10.46202 -10.11412 -9.65400 -8.97631 -8.13930 -6.20180 -0.18232 0.44067 0.84152 1.43305 1.46330 1.54953 1.71720 1.75634 1.94496 2.44754 2.95120 3.20655 3.22037 3.47029 3.93989 3.95740 4.07171 4.11427 4.15794 4.19480 4.30246 4.45758 4.59805 4.72744 4.82471 4.83863 4.90896 4.94255 4.97701 5.09861 5.12163 5.26370 5.36544 5.36647 5.38339 5.47328 5.72907 6.11970 6.27468 6.53945 6.61802 6.86275 6.95205 7.48680 8.95389 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.004064 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.041859 B = 6888.036414 C = 7507.628255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.019 4.019 3 C -0.134 4.134 4 C 0.046 3.954 5 N -0.489 5.489 6 C 0.038 3.962 7 C -0.206 4.206 8 C 0.123 3.877 9 N -0.529 5.529 10 C 0.200 3.800 11 C -0.516 4.516 12 H 0.057 0.943 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.948 3.052 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.072 3.928 20 C -0.062 4.062 21 C 0.242 3.758 22 N -0.485 5.485 23 S 0.120 5.880 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.178 0.822 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.001 0.999 35 H 0.013 0.987 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 14.967 -12.910 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.042 4.042 3 C -0.192 4.192 4 C -0.232 4.232 5 N -0.203 5.203 6 C -0.113 4.113 7 C -0.328 4.328 8 C -0.007 4.007 9 N -0.252 5.252 10 C 0.075 3.925 11 C -0.555 4.555 12 H 0.076 0.924 13 C -0.185 4.185 14 N -0.567 5.567 15 Si 0.775 3.225 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.058 4.058 20 C -0.104 4.104 21 C -0.075 4.075 22 N -0.164 5.164 23 S 0.377 5.623 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.195 0.805 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.019 0.981 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.098 14.029 -14.678 20.333 hybrid contribution 0.192 -0.930 1.906 2.130 sum -0.905 13.098 -12.771 18.317 Atomic orbital electron populations 1.21781 0.92626 1.02017 1.03109 1.20016 0.97106 0.96549 0.90481 1.21760 1.01012 0.93382 1.03089 1.27517 1.00620 0.97743 0.97364 1.66206 1.23576 1.31335 0.99207 1.21820 0.96666 0.92610 1.00192 1.25860 1.08099 1.02931 0.95866 1.20547 0.92615 0.89663 0.97864 1.62272 1.45017 1.09922 1.07947 1.19554 0.93705 0.90231 0.89029 1.21416 0.96828 1.12062 1.25154 0.92439 1.25596 0.96947 0.99340 0.96626 1.70014 1.19344 1.34472 1.32851 0.85699 0.79987 0.79409 0.77438 1.20501 1.21139 1.19472 1.22036 0.94854 0.97556 0.91382 1.20136 1.02482 0.99398 0.88390 1.29249 0.91917 0.92511 0.93788 1.81175 1.10433 1.11336 1.13430 1.83856 1.48532 1.26610 1.03348 0.92908 0.93322 0.89447 0.87861 0.92650 0.89565 0.92896 0.80511 0.92090 0.88529 0.98107 0.96860 0.92865 0.91028 0.90487 0.85871 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.17 71.98 0.66 -1.55 16 2 C -0.02 -0.33 3.35 -11.54 -0.04 -0.36 16 3 C -0.13 -1.93 9.17 71.98 0.66 -1.27 16 4 C 0.05 1.05 5.91 88.52 0.52 1.58 16 5 N -0.49 -13.29 10.53 -191.45 -2.02 -15.30 16 6 C 0.04 1.04 11.25 83.66 0.94 1.98 16 7 C -0.21 -5.46 5.32 24.64 0.13 -5.33 16 8 C 0.12 3.47 5.29 85.56 0.45 3.92 16 9 N -0.53 -18.74 4.69 -905.39 -4.24 -22.98 16 10 C 0.20 8.86 4.52 85.56 0.39 9.25 16 11 C -0.52 -26.19 8.39 25.60 0.21 -25.98 16 12 H 0.06 2.95 7.36 -2.91 -0.02 2.93 16 13 C 0.01 0.72 5.46 84.65 0.46 1.18 16 14 N -0.93 -51.13 13.29 21.45 0.28 -50.84 16 15 Si 0.95 42.36 29.54 68.60 2.03 44.38 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 C 0.07 2.33 4.90 86.30 0.42 2.76 16 20 C -0.06 -1.77 5.05 28.79 0.15 -1.62 16 21 C 0.24 7.48 15.43 89.44 1.38 8.86 16 22 N -0.49 -16.89 18.54 20.01 0.37 -16.52 16 23 S 0.12 2.73 21.73 -56.49 -1.23 1.51 16 24 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 1.38 8.12 -2.39 -0.02 1.36 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.06 1.52 6.07 -2.39 -0.01 1.50 16 33 H 0.10 2.71 7.92 -2.39 -0.02 2.69 16 34 H 0.00 0.06 6.02 -2.39 -0.01 0.04 16 35 H 0.01 0.64 7.91 -2.39 -0.02 0.62 16 36 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.07 2.66 6.97 -2.39 -0.02 2.65 16 38 H 0.08 2.29 5.97 -2.39 -0.01 2.27 16 39 H 0.12 2.81 6.33 -2.39 -0.02 2.79 16 40 H 0.11 3.59 6.29 -2.38 -0.02 3.57 16 Total: -1.00 -60.18 347.04 2.58 -57.60 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.04 Total: 8.75 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 6.34 Total: -6.59 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -5.60 Total: -105.65 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.23 Total: 1.51 kcal Total: -60.18 2.58 -57.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152826471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.803 kcal (2) G-P(sol) polarization free energy of solvation -60.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds