Wall clock time and date at job start Tue Mar 31 2020 07:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 C 1.52996 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47304 * 55.00300 * 4 3 2 6 6 O 1.42906 * 109.47243 * 295.00330 * 4 3 2 7 7 C 1.53004 * 109.47347 * 175.00268 * 4 3 2 8 8 N 1.46497 * 109.47214 * 184.99985 * 7 4 3 9 9 C 1.34779 * 119.99603 * 180.02562 * 8 7 4 10 10 O 1.21593 * 120.00398 * 359.97438 * 9 8 7 11 11 C 1.47538 * 119.99815 * 179.72773 * 9 8 7 12 12 C 1.39669 * 120.19356 * 0.26645 * 11 9 8 13 13 C 1.37827 * 119.91359 * 179.97438 * 12 11 9 14 14 C 1.38574 * 120.32604 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40261 * 359.97438 * 14 13 12 16 16 C 1.38829 * 120.06892 * 359.70981 * 15 14 13 17 17 O 1.35527 * 120.16115 * 180.27720 * 16 15 14 18 18 C 1.34815 * 116.99844 * 354.39419 * 17 16 15 19 19 H 1.08004 * 119.99886 * 5.06084 * 18 17 16 20 20 C 1.38700 * 119.99941 * 185.06574 * 18 17 16 21 21 N 1.31516 * 119.99835 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46900 * 60.00345 * 22 20 18 24 24 H 1.48498 * 109.46784 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47296 * 300.00179 * 22 20 18 26 26 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46832 * 299.99835 * 1 2 3 28 28 H 1.09001 * 109.47606 * 59.99525 * 1 2 3 29 29 H 1.09002 * 109.47108 * 240.00855 * 2 1 3 30 30 H 1.08995 * 109.47431 * 120.00063 * 2 1 3 31 31 H 1.09001 * 109.46910 * 60.00742 * 3 2 1 32 32 H 1.09001 * 109.47299 * 300.00663 * 3 2 1 33 33 H 0.96704 * 113.99408 * 300.00200 * 6 4 3 34 34 H 1.09003 * 109.46759 * 65.00084 * 7 4 3 35 35 H 1.08992 * 109.46619 * 305.00398 * 7 4 3 36 36 H 0.97000 * 120.00131 * 359.97438 * 8 7 4 37 37 H 1.07996 * 120.04212 * 359.95928 * 12 11 9 38 38 H 1.07998 * 119.83585 * 180.02562 * 13 12 11 39 39 H 1.08009 * 119.79802 * 179.97438 * 14 13 12 40 40 H 1.07994 * 119.96259 * 179.97438 * 15 14 13 41 41 H 0.96999 * 120.00113 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9329 0.8533 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0799 2.8796 -0.1263 8 7 5.5399 2.8708 -0.2470 9 6 6.2129 4.0321 -0.3697 10 8 5.6082 5.0870 -0.3806 11 6 7.6837 4.0237 -0.4852 12 6 8.3823 2.8144 -0.4734 13 6 9.7563 2.8132 -0.5822 14 6 10.4496 4.0069 -0.7028 15 6 9.7726 5.2097 -0.7159 16 6 8.3882 5.2298 -0.6140 17 8 7.7212 6.4094 -0.6323 18 6 8.4655 7.5334 -0.6346 19 1 9.5413 7.4685 -0.7047 20 6 7.8497 8.7731 -0.5468 21 7 6.5397 8.8521 -0.4618 22 14 8.8811 10.3305 -0.5493 23 1 9.6608 10.4058 -1.8109 24 1 7.9903 11.5143 -0.4472 25 1 9.8120 10.3096 0.6074 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.7617 1.3472 2.0132 34 1 3.7920 3.4460 0.7593 35 1 3.6449 3.3433 -1.0115 36 1 6.0223 2.0293 -0.2379 37 1 7.8466 1.8814 -0.3790 38 1 10.2951 1.8773 -0.5734 39 1 11.5263 3.9961 -0.7871 40 1 10.3201 6.1358 -0.8098 41 1 6.1090 9.7190 -0.4000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154380875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:35 Heat of formation + Delta-G solvation = -101.385078 kcal Electronic energy + Delta-G solvation = -23063.618263 eV Core-core repulsion = 19522.921343 eV Total energy + Delta-G solvation = -3540.696921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62913 -38.61195 -37.53353 -36.30375 -34.36074 -33.76997 -32.32437 -30.88498 -29.53470 -28.89270 -26.21385 -25.29922 -23.06083 -22.02733 -21.50011 -21.19284 -19.75275 -18.04250 -17.66042 -16.60350 -16.33562 -16.09344 -15.16022 -14.88076 -14.64274 -14.34650 -14.17591 -14.08397 -13.88469 -13.67090 -13.50459 -13.36662 -12.60478 -12.44019 -12.30826 -12.03671 -11.87326 -11.70161 -11.48835 -11.28419 -11.11357 -10.93945 -10.87738 -10.86882 -10.77978 -10.47045 -10.09602 -9.55792 -8.86416 -8.82278 -8.53659 -8.24176 -7.28944 -6.43004 -4.03014 1.74258 2.34364 3.12340 3.14520 3.16820 3.62627 3.77657 3.94744 4.29156 4.52066 4.66755 4.74822 4.77594 5.04130 5.07423 5.09465 5.20171 5.33803 5.44112 5.48149 5.56953 5.60567 5.63646 5.73452 5.83168 5.85427 5.92261 6.08323 6.10058 6.14496 6.14778 6.58965 6.71391 6.93342 6.96866 7.08572 7.25939 7.30906 7.49115 7.71761 7.93747 8.16721 8.96571 9.12706 9.69431 10.70873 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.003624 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.822731 B = 7723.601113 C = 9177.143050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.103 0.897 6 O -0.559 6.559 7 C 0.093 3.907 8 N -0.739 5.739 9 C 0.553 3.447 10 O -0.504 6.504 11 C -0.227 4.227 12 C -0.037 4.037 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.239 4.239 16 C 0.189 3.811 17 O -0.124 6.124 18 C -0.404 4.404 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.834 5.834 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.376 0.624 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.395 0.605 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 -15.036 1.112 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.188 4.188 4 C 0.037 3.963 5 H 0.121 0.879 6 O -0.365 6.365 7 C -0.032 4.032 8 N -0.395 5.395 9 C 0.342 3.658 10 O -0.378 6.378 11 C -0.231 4.231 12 C -0.056 4.056 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.258 4.258 16 C 0.129 3.871 17 O -0.023 6.023 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.465 5.465 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.224 0.776 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.230 0.770 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.437 -14.357 0.703 15.368 hybrid contribution 0.571 0.771 0.302 1.006 sum -4.865 -13.586 1.005 14.466 Atomic orbital electron populations 1.21791 0.95993 1.01507 1.01811 1.21449 0.95496 0.96246 1.02540 1.22259 0.95268 0.97907 1.03399 1.22210 0.92965 0.93101 0.88041 0.87902 1.86557 1.77187 1.57061 1.15678 1.21907 0.82038 0.96516 1.02702 1.45782 1.06324 1.09180 1.78256 1.18261 0.87394 0.83289 0.76816 1.90945 1.69340 1.29938 1.47587 1.18854 0.92067 0.92046 1.20182 1.20783 0.94252 0.95173 0.95423 1.20469 0.93891 0.97336 1.13284 1.20899 0.98655 0.92258 0.95148 1.21152 0.93916 0.98810 1.11899 1.19284 0.90183 0.86976 0.90619 1.84176 1.33721 1.10196 1.74159 1.21452 0.91335 0.82070 1.53153 0.88940 1.25378 0.96171 0.98599 0.96155 1.70119 1.08201 1.25801 1.42406 0.85798 0.78934 0.79543 0.79242 1.19382 1.20174 1.19373 0.92843 0.92786 0.92784 0.92074 0.91346 0.91231 0.90632 0.77618 0.91633 0.91071 0.76952 0.86964 0.87262 0.87189 0.85092 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.94 5.83 -26.73 -0.16 -1.10 16 3 C -0.15 -1.27 4.89 -26.73 -0.13 -1.41 16 4 C 0.10 0.97 3.00 -26.73 -0.08 0.89 16 5 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 6 O -0.56 -5.78 12.82 -35.23 -0.45 -6.23 16 7 C 0.09 1.29 5.31 -4.04 -0.02 1.27 16 8 N -0.74 -12.14 5.45 -61.35 -0.33 -12.47 16 9 C 0.55 12.36 7.76 -12.47 -0.10 12.27 16 10 O -0.50 -13.95 15.17 -16.57 -0.25 -14.20 16 11 C -0.23 -5.02 5.89 -104.81 -0.62 -5.64 16 12 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 13 C -0.23 -3.87 10.02 -39.61 -0.40 -4.27 16 14 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.20 9.16 -39.44 -0.36 -5.56 16 16 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 17 O -0.12 -3.71 7.84 -21.08 -0.17 -3.88 16 18 C -0.40 -11.55 9.49 30.90 0.29 -11.25 16 19 H 0.09 2.39 5.21 -52.48 -0.27 2.12 16 20 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 21 N -0.83 -25.30 13.67 55.48 0.76 -24.54 16 22 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.38 2.97 9.05 45.56 0.41 3.38 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 5.49 6.50 -40.82 -0.27 5.23 16 37 H 0.11 1.57 6.40 -52.49 -0.34 1.23 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -35.19 347.13 -7.51 -42.70 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.95 Total: 9.98 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.32 Total: -12.21 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.42 Total: -37.01 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.87 Total: -24.32 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.19 -7.51 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154380875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.683 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds