Wall clock time and date at job start Tue Mar 31 2020 07:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 C 1.52996 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47304 * 55.00300 * 4 3 2 6 6 O 1.42906 * 109.47243 * 295.00330 * 4 3 2 7 7 C 1.53004 * 109.47347 * 175.00268 * 4 3 2 8 8 N 1.46497 * 109.47214 * 184.99985 * 7 4 3 9 9 C 1.34779 * 119.99603 * 180.02562 * 8 7 4 10 10 O 1.21593 * 120.00398 * 359.97438 * 9 8 7 11 11 C 1.47538 * 119.99815 * 179.72773 * 9 8 7 12 12 C 1.39669 * 120.19356 * 0.26645 * 11 9 8 13 13 C 1.37827 * 119.91359 * 179.97438 * 12 11 9 14 14 C 1.38574 * 120.32604 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40261 * 359.97438 * 14 13 12 16 16 C 1.38829 * 120.06892 * 359.70981 * 15 14 13 17 17 O 1.35527 * 120.16115 * 180.27720 * 16 15 14 18 18 C 1.34815 * 116.99844 * 354.39419 * 17 16 15 19 19 H 1.08004 * 119.99886 * 5.06084 * 18 17 16 20 20 C 1.38700 * 119.99941 * 185.06574 * 18 17 16 21 21 N 1.31516 * 119.99835 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46900 * 60.00345 * 22 20 18 24 24 H 1.48498 * 109.46784 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47296 * 300.00179 * 22 20 18 26 26 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46832 * 299.99835 * 1 2 3 28 28 H 1.09001 * 109.47606 * 59.99525 * 1 2 3 29 29 H 1.09002 * 109.47108 * 240.00855 * 2 1 3 30 30 H 1.08995 * 109.47431 * 120.00063 * 2 1 3 31 31 H 1.09001 * 109.46910 * 60.00742 * 3 2 1 32 32 H 1.09001 * 109.47299 * 300.00663 * 3 2 1 33 33 H 0.96704 * 113.99408 * 300.00200 * 6 4 3 34 34 H 1.09003 * 109.46759 * 65.00084 * 7 4 3 35 35 H 1.08992 * 109.46619 * 305.00398 * 7 4 3 36 36 H 0.97000 * 120.00131 * 359.97438 * 8 7 4 37 37 H 1.07996 * 120.04212 * 359.95928 * 12 11 9 38 38 H 1.07998 * 119.83585 * 180.02562 * 13 12 11 39 39 H 1.08009 * 119.79802 * 179.97438 * 14 13 12 40 40 H 1.07994 * 119.96259 * 179.97438 * 15 14 13 41 41 H 0.96999 * 120.00113 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9329 0.8533 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0799 2.8796 -0.1263 8 7 5.5399 2.8708 -0.2470 9 6 6.2129 4.0321 -0.3697 10 8 5.6082 5.0870 -0.3806 11 6 7.6837 4.0237 -0.4852 12 6 8.3823 2.8144 -0.4734 13 6 9.7563 2.8132 -0.5822 14 6 10.4496 4.0069 -0.7028 15 6 9.7726 5.2097 -0.7159 16 6 8.3882 5.2298 -0.6140 17 8 7.7212 6.4094 -0.6323 18 6 8.4655 7.5334 -0.6346 19 1 9.5413 7.4685 -0.7047 20 6 7.8497 8.7731 -0.5468 21 7 6.5397 8.8521 -0.4618 22 14 8.8811 10.3305 -0.5493 23 1 9.6608 10.4058 -1.8109 24 1 7.9903 11.5143 -0.4472 25 1 9.8120 10.3096 0.6074 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.7617 1.3472 2.0132 34 1 3.7920 3.4460 0.7593 35 1 3.6449 3.3433 -1.0115 36 1 6.0223 2.0293 -0.2379 37 1 7.8466 1.8814 -0.3790 38 1 10.2951 1.8773 -0.5734 39 1 11.5263 3.9961 -0.7871 40 1 10.3201 6.1358 -0.8098 41 1 6.1090 9.7190 -0.4000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154380875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:35 Heat of formation + Delta-G solvation = -128.034547 kcal Electronic energy + Delta-G solvation = -23064.773871 eV Core-core repulsion = 19522.921343 eV Total energy + Delta-G solvation = -3541.852528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30271 -40.02326 -38.84617 -38.01616 -35.34632 -34.97771 -34.32125 -32.36412 -30.62322 -30.52532 -27.54229 -27.01058 -24.51111 -23.28168 -22.70483 -22.20878 -21.31683 -19.85244 -19.31791 -17.94477 -17.52200 -17.28876 -16.62720 -16.29497 -16.10759 -15.91825 -15.66253 -15.46002 -15.30882 -14.97593 -14.83895 -14.36992 -14.23548 -14.01283 -13.55271 -13.53390 -12.97284 -12.75626 -12.70414 -12.65485 -12.50155 -12.35989 -12.19832 -12.14800 -11.71493 -11.50799 -11.43976 -11.04102 -10.82427 -10.55646 -10.12415 -9.78197 -9.03907 -8.44555 -6.15669 0.12185 0.72597 1.32195 1.45256 1.50135 2.08980 2.16102 2.24977 2.87640 3.22278 3.44462 3.47184 3.62643 3.90997 4.02038 4.06264 4.09305 4.25839 4.28741 4.34387 4.51935 4.60573 4.63608 4.66840 4.77558 4.93600 4.97760 5.00405 5.07244 5.07946 5.14128 5.26003 5.38645 5.48256 5.48931 5.53343 5.60978 5.69474 5.96057 6.16880 6.67440 6.77015 6.94567 7.47664 7.80294 8.75847 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.003624 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.822731 B = 7723.601113 C = 9177.143050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.147 4.147 4 C 0.114 3.886 5 H 0.114 0.886 6 O -0.565 6.565 7 C 0.089 3.911 8 N -0.713 5.713 9 C 0.546 3.454 10 O -0.571 6.571 11 C -0.246 4.246 12 C -0.030 4.030 13 C -0.201 4.201 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.148 3.852 17 O -0.189 6.189 18 C -0.429 4.429 19 H 0.107 0.893 20 C -0.022 4.022 21 N -0.906 5.906 22 Si 1.022 2.978 23 H -0.254 1.254 24 H -0.273 1.273 25 H -0.254 1.254 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.387 0.613 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.412 0.588 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -18.700 1.210 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.185 4.185 4 C 0.055 3.945 5 H 0.132 0.868 6 O -0.372 6.372 7 C -0.035 4.035 8 N -0.368 5.368 9 C 0.336 3.664 10 O -0.450 6.450 11 C -0.250 4.250 12 C -0.048 4.048 13 C -0.219 4.219 14 C -0.058 4.058 15 C -0.277 4.277 16 C 0.093 3.907 17 O -0.091 6.091 18 C -0.505 4.505 19 H 0.124 0.876 20 C -0.221 4.221 21 N -0.541 5.541 22 Si 0.841 3.159 23 H -0.178 1.178 24 H -0.198 1.198 25 H -0.178 1.178 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.250 0.750 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.112 -18.152 0.809 18.434 hybrid contribution -0.023 1.410 0.291 1.440 sum -3.135 -16.742 1.101 17.068 Atomic orbital electron populations 1.21791 0.95459 1.02028 1.01844 1.21409 0.95937 0.95342 1.02602 1.22232 0.93927 0.98729 1.03622 1.22068 0.93825 0.90097 0.88510 0.86837 1.86532 1.77416 1.57131 1.16116 1.22132 0.80346 0.99414 1.01642 1.45555 1.07417 1.08063 1.75783 1.18572 0.87956 0.83762 0.76154 1.90925 1.70577 1.32661 1.50848 1.19307 0.92383 0.92987 1.20359 1.21295 0.95183 0.94853 0.93491 1.21179 0.93489 0.98954 1.08292 1.21440 1.00929 0.90975 0.92438 1.21307 0.92712 1.00621 1.13066 1.20093 0.92175 0.86982 0.91458 1.84179 1.35235 1.11512 1.78182 1.22011 0.92161 0.82764 1.53575 0.87601 1.26765 0.97501 1.02406 0.95453 1.70315 1.10753 1.26512 1.46540 0.84621 0.77083 0.74116 0.80129 1.17781 1.19769 1.17834 0.92093 0.92760 0.92806 0.91764 0.91477 0.90944 0.90667 0.76357 0.92843 0.92291 0.75004 0.82503 0.81854 0.82768 0.85824 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.58 5.83 30.59 0.18 -1.40 16 3 C -0.15 -2.29 4.89 30.59 0.15 -2.14 16 4 C 0.11 2.11 3.00 30.59 0.09 2.20 16 5 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 6 O -0.56 -10.29 12.82 -148.98 -1.91 -12.20 16 7 C 0.09 2.48 5.31 86.38 0.46 2.94 16 8 N -0.71 -22.98 5.45 -466.27 -2.54 -25.52 16 9 C 0.55 25.24 7.76 86.70 0.67 25.91 16 10 O -0.57 -34.08 15.17 16.89 0.26 -33.83 16 11 C -0.25 -10.90 5.89 -19.99 -0.12 -11.02 16 12 C -0.03 -0.93 9.54 22.52 0.21 -0.71 16 13 C -0.20 -5.51 10.02 22.25 0.22 -5.28 16 14 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 15 C -0.26 -11.16 9.16 22.36 0.20 -10.96 16 16 C 0.15 7.76 6.66 22.91 0.15 7.91 16 17 O -0.19 -12.14 7.84 0.76 0.01 -12.14 16 18 C -0.43 -26.22 9.49 67.93 0.64 -25.57 16 19 H 0.11 5.78 5.21 -2.91 -0.02 5.77 16 20 C -0.02 -1.32 5.49 84.85 0.47 -0.85 16 21 N -0.91 -59.54 13.67 21.62 0.30 -59.25 16 22 Si 1.02 44.43 29.55 68.60 2.03 46.45 16 23 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.95 7.82 -2.39 -0.02 0.94 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.39 5.36 9.05 -74.05 -0.67 4.69 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.41 10.27 6.50 -92.71 -0.60 9.66 16 37 H 0.16 3.45 6.40 -2.91 -0.02 3.43 16 38 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 41 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -87.48 347.13 2.20 -85.29 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.21 Total: 32.43 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.28 Total: -21.24 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.25 Total: -84.77 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -1.65 Total: -58.16 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -87.48 2.20 -85.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154380875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.746 kcal (2) G-P(sol) polarization free energy of solvation -87.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds