Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.33637 * 122.74635 * 94.70699 * 14 13 12 16 16 S 1.76197 * 107.92098 * 179.97438 * 15 14 13 17 17 C 1.70974 * 90.28274 * 0.27629 * 16 15 14 18 18 C 1.50708 * 124.91532 * 179.84053 * 17 16 15 19 19 C 1.53001 * 117.49830 * 8.75026 * 18 17 16 20 20 C 1.52995 * 117.49834 * 300.08819 * 18 17 16 21 21 N 1.29024 * 110.16808 * 359.83590 * 17 16 15 22 22 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 23 23 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 24 24 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 26 26 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 27 27 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 28 28 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 29 29 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 30 30 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 31 31 H 1.08003 * 126.04213 * 0.03741 * 15 14 13 32 32 H 1.08998 * 115.54834 * 154.41396 * 18 17 16 33 33 H 1.08998 * 117.50090 * 359.97438 * 19 18 17 34 34 H 1.08996 * 117.49893 * 145.02420 * 19 18 17 35 35 H 1.09005 * 117.49643 * 214.98133 * 20 18 17 36 36 H 1.08998 * 117.50346 * 359.97313 * 20 18 17 37 37 H 1.09002 * 109.49350 * 303.14487 * 22 12 11 38 38 H 1.08999 * 109.49121 * 183.06761 * 22 12 11 39 39 H 1.08998 * 109.62394 * 350.89040 * 23 9 7 40 40 H 1.09003 * 109.62806 * 111.27869 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.2800 -4.8707 -4.9088 16 16 -1.8607 -4.9573 -5.6823 17 6 -2.4527 -5.9020 -4.3861 18 6 -3.8590 -6.4331 -4.2777 19 6 -4.7681 -6.2799 -5.4987 20 6 -4.9996 -5.4136 -4.2581 21 7 -1.5213 -6.0946 -3.5143 22 6 2.0052 -4.6207 -1.0114 23 6 1.8271 -3.6605 0.1695 24 1 -0.4850 0.8400 0.0004 25 1 -0.6889 -2.6172 -0.6930 26 1 0.0879 -1.3427 -1.6691 27 1 1.2905 -3.0222 -2.9917 28 1 -0.4418 -3.4325 -2.9953 29 1 1.7579 -5.5891 -3.3968 30 1 0.8077 -6.6863 -2.3663 31 1 0.5876 -4.3545 -5.2923 32 1 -3.9767 -7.3318 -3.6722 33 1 -4.3493 -5.7947 -6.3803 34 1 -5.4842 -7.0776 -5.6962 35 1 -5.8679 -5.6418 -3.6399 36 1 -4.7330 -4.3588 -4.3232 37 1 2.8210 -4.2714 -1.6443 38 1 2.2358 -5.6182 -0.6375 39 1 2.7786 -3.5350 0.6861 40 1 1.0849 -4.0595 0.8609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161653569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = 110.235164 kcal Electronic energy + Delta-G solvation = -21304.173942 eV Core-core repulsion = 18247.699186 eV Total energy + Delta-G solvation = -3056.474756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11440 -37.99066 -37.16076 -34.37957 -31.68817 -30.22523 -29.81416 -27.52521 -25.78623 -24.60149 -22.70868 -22.59976 -22.39475 -21.04424 -19.65045 -19.07599 -17.56511 -16.70367 -16.22637 -15.48999 -15.05785 -14.59573 -14.50275 -14.07274 -13.89426 -13.65553 -13.40258 -13.03783 -12.96719 -12.71437 -12.40001 -11.86774 -11.69451 -11.49451 -11.17366 -11.04414 -10.94516 -10.79145 -10.73169 -10.44677 -10.27006 -10.02781 -9.73314 -9.61114 -9.54682 -9.27606 -8.62856 -8.47617 -7.74094 -6.63389 -5.75043 -3.16571 0.70288 1.34934 1.73821 2.76357 3.38959 3.45601 3.47145 3.56077 3.88123 4.50359 4.52256 4.57590 4.67696 4.77674 5.05548 5.22653 5.32543 5.36236 5.42051 5.48683 5.56369 5.62867 5.73641 5.79993 5.86462 5.93876 6.04156 6.17816 6.18789 6.26868 6.36118 6.57582 6.73929 6.97891 7.28281 7.60876 7.69147 7.74282 7.84595 7.87236 8.46464 9.24028 9.87646 10.46897 11.33634 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.003988 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.940977 B = 7019.422759 C = 7600.680736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.181 3.819 11 C 0.035 3.965 12 N -0.523 5.523 13 C 0.126 3.874 14 C 0.090 3.910 15 C -0.257 4.257 16 S 0.106 5.894 17 C 0.079 3.921 18 C -0.083 4.083 19 C -0.171 4.171 20 C -0.158 4.158 21 N -0.450 5.450 22 C 0.046 3.954 23 C 0.149 3.851 24 H 0.253 0.747 25 H 0.025 0.975 26 H 0.087 0.913 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.175 0.825 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.028 0.972 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -13.165 -12.953 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.055 3.945 11 C -0.094 4.094 12 N -0.249 5.249 13 C -0.005 4.005 14 C -0.042 4.042 15 C -0.396 4.396 16 S 0.361 5.639 17 C -0.199 4.199 18 C -0.105 4.105 19 C -0.209 4.209 20 C -0.197 4.197 21 N -0.164 5.164 22 C -0.084 4.084 23 C 0.022 3.978 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.105 0.895 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.192 0.808 32 H 0.150 0.850 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.019 -13.045 -13.061 19.749 hybrid contribution 1.852 1.068 -0.005 2.138 sum -5.167 -11.976 -13.066 18.462 Atomic orbital electron populations 1.70040 1.05210 1.25411 1.54114 1.25030 0.95292 0.98329 1.01080 0.86289 0.79106 0.83762 0.77622 1.21552 1.21736 1.20450 1.19215 0.92581 0.84834 1.41513 0.91610 1.44157 1.34379 1.01313 1.52048 1.20926 0.88929 0.96361 0.88294 1.23039 0.98441 0.89318 0.98610 1.62079 1.34725 1.05549 1.22505 1.20679 0.90911 0.97901 0.90965 1.20097 0.93471 0.96450 0.94199 1.26884 1.01875 1.09861 1.01023 1.83709 1.04932 1.49806 1.25420 1.26090 0.98743 1.01039 0.94002 1.20384 0.84260 1.02014 1.03824 1.23146 1.02146 1.03472 0.92153 1.23162 0.98813 0.97239 1.00506 1.65952 0.99689 1.22406 1.28342 1.22642 0.89250 0.99606 0.96879 1.20967 0.97829 0.86453 0.92521 0.93651 0.95667 0.89511 0.95894 0.92341 0.93847 0.89569 0.80794 0.84980 0.88428 0.87390 0.87419 0.88057 0.95335 0.91820 0.92545 0.95593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 11.16 55.49 0.62 -26.23 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -7.09 9.63 -15.06 -0.15 -7.24 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 9 N -0.60 -15.63 3.03 -171.73 -0.52 -16.15 16 10 C 0.18 4.61 5.45 -3.36 -0.02 4.59 16 11 C 0.04 0.73 4.96 -3.46 -0.02 0.72 16 12 N -0.52 -10.04 4.77 -235.46 -1.12 -11.16 16 13 C 0.13 2.00 5.71 -4.98 -0.03 1.97 16 14 C 0.09 1.42 4.78 -84.23 -0.40 1.02 16 15 C -0.26 -3.55 9.66 29.12 0.28 -3.27 16 16 S 0.11 1.26 21.94 -107.50 -2.36 -1.09 16 17 C 0.08 1.07 7.04 -13.45 -0.09 0.98 16 18 C -0.08 -0.87 6.33 -91.77 -0.58 -1.45 16 19 C -0.17 -1.31 10.02 -26.69 -0.27 -1.58 16 20 C -0.16 -1.41 10.24 -26.69 -0.27 -1.69 16 21 N -0.45 -7.33 10.53 -8.06 -0.08 -7.41 16 22 C 0.05 0.85 5.58 -3.70 -0.02 0.83 16 23 C 0.15 3.29 6.69 -3.60 -0.02 3.27 16 24 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 2.42 6.12 -51.93 -0.32 2.10 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.19 5.73 -51.93 -0.30 0.89 16 29 H 0.04 0.63 8.04 -51.93 -0.42 0.21 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.17 2.14 8.06 -52.48 -0.42 1.71 16 32 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.10 0.74 7.23 -51.93 -0.38 0.36 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 39 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -31.92 334.06 -11.16 -43.07 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.02 Total: -1.11 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.68 Total: -1.92 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -1.11 Total: -60.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.36 Total: -1.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.92 -11.16 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161653569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.309 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds