Wall clock time and date at job start Tue Mar 31 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.33637 * 122.74635 * 94.70699 * 14 13 12 16 16 S 1.76197 * 107.92098 * 179.97438 * 15 14 13 17 17 C 1.70974 * 90.28274 * 0.27629 * 16 15 14 18 18 C 1.50708 * 124.91532 * 179.84053 * 17 16 15 19 19 C 1.53001 * 117.49830 * 8.75026 * 18 17 16 20 20 C 1.52995 * 117.49834 * 300.08819 * 18 17 16 21 21 N 1.29024 * 110.16808 * 359.83590 * 17 16 15 22 22 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 23 23 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 24 24 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 26 26 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 27 27 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 28 28 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 29 29 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 30 30 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 31 31 H 1.08003 * 126.04213 * 0.03741 * 15 14 13 32 32 H 1.08998 * 115.54834 * 154.41396 * 18 17 16 33 33 H 1.08998 * 117.50090 * 359.97438 * 19 18 17 34 34 H 1.08996 * 117.49893 * 145.02420 * 19 18 17 35 35 H 1.09005 * 117.49643 * 214.98133 * 20 18 17 36 36 H 1.08998 * 117.50346 * 359.97313 * 20 18 17 37 37 H 1.09002 * 109.49350 * 303.14487 * 22 12 11 38 38 H 1.08999 * 109.49121 * 183.06761 * 22 12 11 39 39 H 1.08998 * 109.62394 * 350.89040 * 23 9 7 40 40 H 1.09003 * 109.62806 * 111.27869 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.2800 -4.8707 -4.9088 16 16 -1.8607 -4.9573 -5.6823 17 6 -2.4527 -5.9020 -4.3861 18 6 -3.8590 -6.4331 -4.2777 19 6 -4.7681 -6.2799 -5.4987 20 6 -4.9996 -5.4136 -4.2581 21 7 -1.5213 -6.0946 -3.5143 22 6 2.0052 -4.6207 -1.0114 23 6 1.8271 -3.6605 0.1695 24 1 -0.4850 0.8400 0.0004 25 1 -0.6889 -2.6172 -0.6930 26 1 0.0879 -1.3427 -1.6691 27 1 1.2905 -3.0222 -2.9917 28 1 -0.4418 -3.4325 -2.9953 29 1 1.7579 -5.5891 -3.3968 30 1 0.8077 -6.6863 -2.3663 31 1 0.5876 -4.3545 -5.2923 32 1 -3.9767 -7.3318 -3.6722 33 1 -4.3493 -5.7947 -6.3803 34 1 -5.4842 -7.0776 -5.6962 35 1 -5.8679 -5.6418 -3.6399 36 1 -4.7330 -4.3588 -4.3232 37 1 2.8210 -4.2714 -1.6443 38 1 2.2358 -5.6182 -0.6375 39 1 2.7786 -3.5350 0.6861 40 1 1.0849 -4.0595 0.8609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161653569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:34 Heat of formation + Delta-G solvation = 89.590853 kcal Electronic energy + Delta-G solvation = -21305.069146 eV Core-core repulsion = 18247.699186 eV Total energy + Delta-G solvation = -3057.369961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23585 -39.45682 -38.08169 -36.17015 -33.50171 -31.77663 -31.43768 -29.07549 -27.07109 -26.07468 -24.32694 -24.13790 -23.34753 -22.01685 -20.87161 -20.71712 -18.89230 -18.39744 -17.19831 -17.10727 -16.45117 -16.10434 -15.74685 -15.52558 -15.32962 -15.14895 -14.77223 -14.70854 -14.66532 -13.97081 -13.39839 -13.26046 -13.06922 -12.90827 -12.64233 -12.61581 -12.42292 -12.19026 -12.09998 -11.87796 -11.82471 -11.57321 -11.49933 -11.46105 -10.61955 -10.60001 -10.31104 -9.66118 -9.23953 -8.71687 -7.89466 -5.35473 -0.31734 0.36951 0.71130 1.45631 1.46633 1.56299 1.67108 2.49291 2.77454 3.03664 3.10775 3.26232 3.64532 3.74519 3.82540 4.00272 4.08498 4.21447 4.26264 4.31041 4.38850 4.44415 4.52478 4.60823 4.65289 4.72389 4.80472 4.84947 4.92348 5.01191 5.04563 5.12733 5.15808 5.17376 5.31797 5.58524 5.60736 6.13136 6.19328 6.34712 6.82455 7.09826 7.80195 8.36018 9.17692 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.003988 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.940977 B = 7019.422759 C = 7600.680736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.266 4.266 8 H 0.071 0.929 9 N -0.613 5.613 10 C 0.191 3.809 11 C 0.060 3.940 12 N -0.539 5.539 13 C 0.131 3.869 14 C 0.067 3.933 15 C -0.268 4.268 16 S 0.156 5.844 17 C 0.068 3.932 18 C -0.108 4.108 19 C -0.146 4.146 20 C -0.162 4.162 21 N -0.490 5.490 22 C 0.056 3.944 23 C 0.144 3.856 24 H 0.250 0.750 25 H -0.012 1.012 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.188 0.812 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.033 0.967 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 -14.011 -14.568 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.396 4.396 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.065 3.935 11 C -0.070 4.070 12 N -0.265 5.265 13 C 0.001 3.999 14 C -0.065 4.065 15 C -0.408 4.408 16 S 0.412 5.588 17 C -0.209 4.209 18 C -0.130 4.130 19 C -0.183 4.183 20 C -0.201 4.201 21 N -0.205 5.205 22 C -0.072 4.072 23 C 0.018 3.982 24 H 0.059 0.941 25 H 0.006 0.994 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.205 0.795 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -6.558 -13.927 -14.688 21.277 hybrid contribution 1.636 1.274 0.498 2.133 sum -4.922 -12.653 -14.190 19.638 Atomic orbital electron populations 1.70215 1.06851 1.25906 1.55479 1.25850 0.96050 1.01677 1.01145 0.85207 0.78089 0.79193 0.77609 1.21094 1.22117 1.19092 1.19591 0.93019 0.85896 1.41063 0.91093 1.44436 1.34287 1.02386 1.52643 1.20630 0.87675 0.96105 0.89118 1.22588 0.98651 0.89304 0.96410 1.61957 1.35336 1.05113 1.24088 1.20672 0.92090 0.96694 0.90440 1.20130 0.93597 0.97790 0.94997 1.27148 1.03447 1.09311 1.00906 1.83458 1.03125 1.48433 1.23738 1.26634 0.99489 1.00698 0.94065 1.20559 0.83334 1.02685 1.06455 1.23275 1.00767 1.03218 0.91079 1.23244 0.98501 0.96403 1.01903 1.65963 1.00459 1.24075 1.29960 1.22499 0.89073 1.00258 0.95404 1.21140 0.97582 0.85476 0.94001 0.94073 0.99399 0.92569 0.95772 0.91980 0.91891 0.88825 0.79485 0.84832 0.88120 0.84813 0.85884 0.89284 0.94922 0.88415 0.91548 0.97050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 11.16 21.65 0.24 -57.30 16 2 C -0.05 -2.99 4.93 84.86 0.42 -2.57 16 3 Si 0.97 45.64 29.59 68.60 2.03 47.67 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.27 -15.11 9.63 84.03 0.81 -14.30 16 8 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 9 N -0.61 -32.74 3.03 -697.23 -2.11 -34.85 16 10 C 0.19 10.07 5.45 86.50 0.47 10.54 16 11 C 0.06 2.51 4.96 86.54 0.43 2.94 16 12 N -0.54 -20.24 4.77 -898.86 -4.29 -24.52 16 13 C 0.13 3.94 5.71 85.56 0.49 4.42 16 14 C 0.07 2.05 4.78 41.52 0.20 2.25 16 15 C -0.27 -7.05 9.66 66.78 0.64 -6.41 16 16 S 0.16 3.48 21.94 -56.49 -1.24 2.24 16 17 C 0.07 1.79 7.04 88.52 0.62 2.41 16 18 C -0.11 -2.14 6.33 -11.54 -0.07 -2.22 16 19 C -0.15 -1.87 10.02 30.62 0.31 -1.56 16 20 C -0.16 -2.66 10.24 30.62 0.31 -2.35 16 21 N -0.49 -15.75 10.53 -179.40 -1.89 -17.64 16 22 C 0.06 2.01 5.58 86.38 0.48 2.49 16 23 C 0.14 6.32 6.69 86.35 0.58 6.90 16 24 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 25 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H 0.06 3.27 6.12 -2.39 -0.01 3.26 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 2.54 5.73 -2.38 -0.01 2.53 16 29 H 0.06 1.65 8.04 -2.38 -0.02 1.63 16 30 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.19 4.25 8.06 -2.91 -0.02 4.22 16 32 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.10 1.24 7.23 -2.39 -0.02 1.22 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 2.83 8.11 -2.39 -0.02 2.81 16 39 H 0.07 2.74 7.95 -2.39 -0.02 2.72 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -70.39 334.06 -0.54 -70.93 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.03 Total: 10.91 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.69 Total: 2.56 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -8.05 Total: -134.31 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.24 Total: 2.24 kcal Total: -70.39 -0.54 -70.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161653569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.524 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds