Wall clock time and date at job start Tue Mar 31 2020 06:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.29029 * 124.91082 * 90.00272 * 3 2 1 5 5 C 1.31784 * 117.11934 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74599 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47594 * 144.97019 * 6 5 4 8 8 C 1.53003 * 109.46926 * 264.96678 * 6 5 4 9 9 N 1.46900 * 109.47672 * 24.96779 * 6 5 4 10 10 C 1.46895 * 111.00238 * 155.00034 * 9 6 5 11 11 C 1.53003 * 109.47121 * 180.02562 * 10 9 6 12 12 H 1.09003 * 109.47066 * 55.00226 * 11 10 9 13 13 C 1.47201 * 109.47145 * 295.00012 * 11 10 9 14 14 N 7.35012 * 96.73538 * 66.53426 * 2 1 3 15 15 C 1.52996 * 109.47101 * 174.99979 * 11 10 9 16 16 C 1.50699 * 109.47432 * 185.00168 * 15 11 10 17 17 H 1.07999 * 119.99506 * 359.97438 * 16 15 11 18 18 C 1.37881 * 120.00473 * 180.02562 * 16 15 11 19 19 N 1.31510 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47553 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47062 * 119.99791 * 20 18 16 23 23 H 1.48503 * 109.47327 * 239.99663 * 20 18 16 24 24 C 1.33639 * 114.50435 * 359.97438 * 5 4 3 25 25 S 1.70976 * 124.91946 * 269.69503 * 3 2 1 26 26 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 29 29 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 30 30 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 31 31 H 1.09007 * 109.47502 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.47593 * 300.00418 * 8 6 5 33 33 H 1.09006 * 109.46771 * 60.00330 * 8 6 5 34 34 H 1.00903 * 110.99735 * 278.96068 * 9 6 5 35 35 H 1.08996 * 109.47037 * 300.00270 * 10 9 6 36 36 H 1.09006 * 109.47179 * 60.00518 * 10 9 6 37 37 H 1.09005 * 109.47615 * 305.00372 * 15 11 10 38 38 H 1.09000 * 109.47389 * 65.00256 * 15 11 10 39 39 H 0.96996 * 119.99849 * 179.97438 * 19 18 16 40 40 H 1.07994 * 126.03803 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0581 5 6 2.7143 3.3479 0.8794 6 6 3.0414 4.2711 2.0247 7 1 3.8896 4.8998 1.7539 8 6 1.8296 5.1538 2.3304 9 7 3.3805 3.4765 3.2128 10 6 4.2441 4.2371 4.1259 11 6 4.5756 3.3784 5.3481 12 1 5.0127 2.4348 5.0215 13 6 3.3440 3.1114 6.1088 14 7 2.3920 2.9066 6.6957 15 6 5.5736 4.1218 6.2381 16 6 5.9941 3.2284 7.3765 17 1 5.5895 2.2303 7.4574 18 6 6.8944 3.6854 8.3154 19 7 7.3867 4.9010 8.2172 20 14 7.4150 2.5782 9.7269 21 1 6.7230 1.2694 9.6105 22 1 8.8840 2.3671 9.6746 23 1 7.0523 3.2174 11.0173 24 6 2.8433 3.7099 -0.4005 25 16 2.3656 2.3411 -1.4019 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.0659 5.8213 3.1591 32 1 1.5779 5.7434 1.4489 33 1 0.9813 4.5251 2.6013 34 1 2.5474 3.1577 3.6844 35 1 5.1662 4.5086 3.6121 36 1 3.7268 5.1415 4.4464 37 1 6.4492 4.3978 5.6504 38 1 5.1051 5.0217 6.6365 39 1 8.0198 5.2227 8.8779 40 1 3.1831 4.6707 -0.7579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171983117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:29 Heat of formation + Delta-G solvation = 48.909482 kcal Electronic energy + Delta-G solvation = -20341.798295 eV Core-core repulsion = 17282.664257 eV Total energy + Delta-G solvation = -3059.134037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14748 -37.56026 -35.74980 -34.19981 -33.54863 -32.05861 -30.10873 -28.64494 -26.38393 -25.63624 -23.98080 -22.49985 -21.86996 -21.23116 -19.73420 -17.64387 -16.73649 -16.53985 -15.87522 -15.18256 -14.86746 -14.84894 -14.62485 -14.31367 -14.00679 -13.34681 -13.27026 -12.93610 -12.79825 -12.68917 -12.39234 -12.21727 -12.06285 -11.92727 -11.70462 -11.49488 -11.39001 -11.27834 -11.13723 -11.00416 -10.71384 -10.48999 -10.24105 -9.61548 -9.51830 -9.46552 -9.19796 -8.80472 -8.44232 -8.22966 -6.08103 -4.10723 0.62584 1.27016 1.62946 2.77001 3.29861 3.37924 3.43132 3.61191 3.67411 3.91076 4.27547 4.44595 4.63743 4.82274 4.85496 4.94655 4.99620 5.05697 5.14638 5.28982 5.30133 5.40583 5.53995 5.56299 5.59588 5.64727 5.72232 5.80905 5.88254 5.97590 6.16590 6.18397 6.40537 6.57999 7.11491 7.45503 7.51824 7.56111 7.79763 7.87691 8.25490 8.45121 8.94184 9.54652 11.02906 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.003031 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.515033 B = 9236.529312 C = 9611.938040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.053 3.947 4 N -0.443 5.443 5 C 0.095 3.905 6 C 0.156 3.844 7 H 0.097 0.903 8 C -0.178 4.178 9 N -0.674 5.674 10 C 0.066 3.934 11 C 0.008 3.992 12 H 0.111 0.889 13 C 0.242 3.758 14 N -0.477 5.477 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 C -0.265 4.265 25 S 0.093 5.907 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.346 0.654 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.040 0.960 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 -3.086 -22.560 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.226 4.226 4 N -0.156 5.156 5 C -0.037 4.037 6 C 0.043 3.957 7 H 0.115 0.885 8 C -0.238 4.238 9 N -0.305 5.305 10 C -0.064 4.064 11 C -0.014 4.014 12 H 0.129 0.871 13 C -0.075 4.075 14 N -0.154 5.154 15 C -0.006 4.006 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.210 1.210 24 C -0.404 4.404 25 S 0.348 5.652 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.116 -4.040 -22.458 25.382 hybrid contribution 0.387 0.832 1.699 1.931 sum -10.729 -3.208 -20.759 23.587 Atomic orbital electron populations 1.21757 0.93643 1.02471 1.02567 1.20217 0.96594 0.87732 1.04306 1.27135 1.02944 1.01882 0.90593 1.66045 1.13429 1.05401 1.30748 1.20242 0.98826 0.91173 0.93504 1.20046 0.97096 0.90309 0.88253 0.88488 1.22496 0.98672 1.00256 1.02335 1.60451 1.22792 1.39163 1.08058 1.22146 0.97606 0.94518 0.92099 1.19312 0.87828 1.02110 0.92169 0.87148 1.29334 0.93613 0.91878 0.92642 1.81062 1.13587 1.10297 1.10468 1.19164 0.92473 0.95381 0.93588 1.21197 1.25500 1.00230 1.09345 0.92438 1.24953 0.96059 0.95073 0.97938 1.69945 1.30898 1.16380 1.35872 0.86539 0.78366 0.80963 0.82242 1.19653 1.20839 1.21020 1.26676 1.13764 1.04253 0.95677 1.83847 1.61511 1.06224 1.13659 0.92590 0.91470 0.91890 0.89858 0.88531 0.91493 0.91968 0.92210 0.83457 0.89098 0.94646 0.94227 0.95759 0.92887 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.05 -0.39 6.52 -27.88 -0.18 -0.57 16 3 C 0.05 0.58 6.64 -13.45 -0.09 0.49 16 4 N -0.44 -5.93 10.14 -8.05 -0.08 -6.01 16 5 C 0.10 1.17 5.80 -84.22 -0.49 0.68 16 6 C 0.16 1.86 2.93 -68.86 -0.20 1.66 16 7 H 0.10 1.03 7.80 -51.93 -0.40 0.63 16 8 C -0.18 -1.92 9.14 37.16 0.34 -1.58 16 9 N -0.67 -9.65 5.93 -107.95 -0.64 -10.29 16 10 C 0.07 1.00 4.92 -3.83 -0.02 0.98 16 11 C 0.01 0.15 2.42 -93.41 -0.23 -0.08 16 12 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 13 C 0.24 5.03 12.98 -20.73 -0.27 4.76 16 14 N -0.48 -10.67 18.54 42.19 0.78 -9.89 16 15 C 0.03 0.76 4.42 -27.89 -0.12 0.64 16 16 C -0.52 -14.14 8.60 -34.44 -0.30 -14.44 16 17 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.26 -2.67 11.14 29.12 0.32 -2.34 16 25 S 0.09 0.85 23.18 -107.50 -2.49 -1.65 16 26 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.73 7.45 -51.92 -0.39 0.34 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.35 5.38 7.55 -39.29 -0.30 5.08 16 35 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 36 H 0.04 0.52 7.43 -51.93 -0.39 0.14 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -31.07 356.46 -8.38 -39.45 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.08 Total: 0.33 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.96 Total: -8.88 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.80 Total: -51.14 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.07 -8.38 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171983117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.363 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds