Wall clock time and date at job start Tue Mar 31 2020 06:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.29029 * 124.91082 * 90.00272 * 3 2 1 5 5 C 1.31784 * 117.11934 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74599 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47594 * 144.97019 * 6 5 4 8 8 C 1.53003 * 109.46926 * 264.96678 * 6 5 4 9 9 N 1.46900 * 109.47672 * 24.96779 * 6 5 4 10 10 C 1.46895 * 111.00238 * 155.00034 * 9 6 5 11 11 C 1.53003 * 109.47121 * 180.02562 * 10 9 6 12 12 H 1.09003 * 109.47066 * 55.00226 * 11 10 9 13 13 C 1.47201 * 109.47145 * 295.00012 * 11 10 9 14 14 N 7.35012 * 96.73538 * 66.53426 * 2 1 3 15 15 C 1.52996 * 109.47101 * 174.99979 * 11 10 9 16 16 C 1.50699 * 109.47432 * 185.00168 * 15 11 10 17 17 H 1.07999 * 119.99506 * 359.97438 * 16 15 11 18 18 C 1.37881 * 120.00473 * 180.02562 * 16 15 11 19 19 N 1.31510 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47553 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47062 * 119.99791 * 20 18 16 23 23 H 1.48503 * 109.47327 * 239.99663 * 20 18 16 24 24 C 1.33639 * 114.50435 * 359.97438 * 5 4 3 25 25 S 1.70976 * 124.91946 * 269.69503 * 3 2 1 26 26 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 29 29 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 30 30 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 31 31 H 1.09007 * 109.47502 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.47593 * 300.00418 * 8 6 5 33 33 H 1.09006 * 109.46771 * 60.00330 * 8 6 5 34 34 H 1.00903 * 110.99735 * 278.96068 * 9 6 5 35 35 H 1.08996 * 109.47037 * 300.00270 * 10 9 6 36 36 H 1.09006 * 109.47179 * 60.00518 * 10 9 6 37 37 H 1.09005 * 109.47615 * 305.00372 * 15 11 10 38 38 H 1.09000 * 109.47389 * 65.00256 * 15 11 10 39 39 H 0.96996 * 119.99849 * 179.97438 * 19 18 16 40 40 H 1.07994 * 126.03803 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0581 5 6 2.7143 3.3479 0.8794 6 6 3.0414 4.2711 2.0247 7 1 3.8896 4.8998 1.7539 8 6 1.8296 5.1538 2.3304 9 7 3.3805 3.4765 3.2128 10 6 4.2441 4.2371 4.1259 11 6 4.5756 3.3784 5.3481 12 1 5.0127 2.4348 5.0215 13 6 3.3440 3.1114 6.1088 14 7 2.3920 2.9066 6.6957 15 6 5.5736 4.1218 6.2381 16 6 5.9941 3.2284 7.3765 17 1 5.5895 2.2303 7.4574 18 6 6.8944 3.6854 8.3154 19 7 7.3867 4.9010 8.2172 20 14 7.4150 2.5782 9.7269 21 1 6.7230 1.2694 9.6105 22 1 8.8840 2.3671 9.6746 23 1 7.0523 3.2174 11.0173 24 6 2.8433 3.7099 -0.4005 25 16 2.3656 2.3411 -1.4019 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.0659 5.8213 3.1591 32 1 1.5779 5.7434 1.4489 33 1 0.9813 4.5251 2.6013 34 1 2.5474 3.1577 3.6844 35 1 5.1662 4.5086 3.6121 36 1 3.7268 5.1415 4.4464 37 1 6.4492 4.3978 5.6504 38 1 5.1051 5.0217 6.6365 39 1 8.0198 5.2227 8.8779 40 1 3.1831 4.6707 -0.7579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171983117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:28 Heat of formation + Delta-G solvation = 29.910506 kcal Electronic energy + Delta-G solvation = -20342.622152 eV Core-core repulsion = 17282.664257 eV Total energy + Delta-G solvation = -3059.957895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97790 -38.93138 -37.06244 -35.62948 -34.81650 -33.64010 -31.27819 -29.61866 -27.94861 -26.50147 -25.04563 -23.78344 -23.54685 -22.09086 -20.52755 -18.60594 -18.45650 -18.20499 -16.97814 -16.60285 -16.10596 -15.68335 -15.64926 -15.34788 -14.92884 -14.79015 -14.55325 -14.25841 -14.00053 -13.88596 -13.73997 -13.42521 -13.21046 -13.10453 -13.06054 -12.67558 -12.54155 -12.50076 -12.41423 -12.30856 -12.08126 -11.98465 -11.95093 -11.38497 -11.13537 -10.55648 -10.39838 -10.23669 -9.58648 -9.30281 -8.20000 -6.27810 -0.14080 0.54303 0.85845 1.38435 1.41274 1.52037 1.92415 1.93999 1.96859 2.41204 3.14233 3.15048 3.24485 3.25329 3.87991 4.06468 4.16319 4.24623 4.28836 4.36185 4.39526 4.41146 4.57044 4.66768 4.71988 4.80208 4.84072 4.98192 4.99425 5.01550 5.08664 5.14063 5.27568 5.37824 5.47169 5.62960 5.79289 6.02943 6.21848 6.33420 6.74995 6.86934 7.01329 7.40557 8.91106 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.003031 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.515033 B = 9236.529312 C = 9611.938040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.035 3.965 4 N -0.482 5.482 5 C 0.070 3.930 6 C 0.156 3.844 7 H 0.113 0.887 8 C -0.171 4.171 9 N -0.679 5.679 10 C 0.078 3.922 11 C 0.019 3.981 12 H 0.117 0.883 13 C 0.252 3.748 14 N -0.506 5.506 15 C 0.040 3.960 16 C -0.539 4.539 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.948 3.052 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.284 1.284 24 C -0.264 4.264 25 S 0.140 5.860 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.336 0.664 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 -3.369 -24.396 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.244 4.244 4 N -0.197 5.197 5 C -0.062 4.062 6 C 0.043 3.957 7 H 0.130 0.870 8 C -0.230 4.230 9 N -0.309 5.309 10 C -0.052 4.052 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.064 4.064 14 N -0.183 5.183 15 C 0.001 3.999 16 C -0.577 4.577 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.774 3.226 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.210 1.210 24 C -0.403 4.403 25 S 0.395 5.605 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.154 0.846 35 H 0.126 0.874 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.000 -4.331 -24.315 27.036 hybrid contribution 0.329 0.909 2.182 2.387 sum -10.672 -3.422 -22.132 24.808 Atomic orbital electron populations 1.21724 0.92983 1.03376 1.01859 1.20337 0.97120 0.86681 1.04849 1.27542 1.02813 1.02837 0.91167 1.66036 1.14828 1.06343 1.32475 1.20299 1.00401 0.91275 0.94273 1.20147 0.97978 0.90384 0.87166 0.86956 1.22415 0.97661 0.99865 1.03046 1.60422 1.22371 1.39763 1.08338 1.21998 0.98687 0.93648 0.90829 1.19222 0.85975 1.02479 0.92576 0.86554 1.29706 0.93633 0.91028 0.92058 1.81056 1.14657 1.11323 1.11304 1.18976 0.93207 0.94353 0.93318 1.21582 1.25246 1.00442 1.10469 0.93049 1.25696 0.96376 0.96321 1.00314 1.70029 1.31620 1.17694 1.36873 0.85648 0.78439 0.79204 0.79309 1.19556 1.19720 1.21007 1.27025 1.12466 1.05571 0.95282 1.83636 1.60204 1.04839 1.11844 0.91815 0.89778 0.93988 0.87565 0.89711 0.91765 0.90020 0.93863 0.84550 0.87436 0.94332 0.94418 0.97892 0.92683 0.78404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.05 -0.76 6.52 29.85 0.19 -0.57 16 3 C 0.03 0.72 6.64 88.52 0.59 1.31 16 4 N -0.48 -12.69 10.14 -179.39 -1.82 -14.51 16 5 C 0.07 1.63 5.80 41.52 0.24 1.87 16 6 C 0.16 3.51 2.93 44.17 0.13 3.64 16 7 H 0.11 2.14 7.80 -2.39 -0.02 2.12 16 8 C -0.17 -3.50 9.14 71.98 0.66 -2.84 16 9 N -0.68 -18.98 5.93 -495.44 -2.94 -21.92 16 10 C 0.08 2.28 4.92 86.31 0.42 2.71 16 11 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 12 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 13 C 0.25 10.51 12.98 89.43 1.16 11.68 16 14 N -0.51 -22.81 18.54 20.02 0.37 -22.44 16 15 C 0.04 1.88 4.42 29.85 0.13 2.02 16 16 C -0.54 -29.14 8.60 25.60 0.22 -28.92 16 17 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 18 C 0.01 0.66 5.46 84.66 0.46 1.12 16 19 N -0.92 -53.25 13.29 21.45 0.28 -52.96 16 20 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 C -0.26 -4.72 11.14 66.78 0.74 -3.98 16 25 S 0.14 2.23 23.18 -56.49 -1.31 0.92 16 26 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.33 7.45 -2.38 -0.02 1.32 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.02 8.13 -2.38 -0.02 1.00 16 34 H 0.34 10.50 7.55 -89.69 -0.68 9.83 16 35 H 0.11 2.81 8.05 -2.39 -0.02 2.79 16 36 H 0.04 1.10 7.43 -2.38 -0.02 1.09 16 37 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.20 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -66.28 356.46 2.61 -63.67 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.36 Total: 13.62 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.64 Total: -12.48 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.10 Total: -111.83 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.31 Total: 0.92 kcal Total: -66.28 2.61 -63.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171983117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.584 kcal (2) G-P(sol) polarization free energy of solvation -66.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds