Wall clock time and date at job start Tue Mar 31 2020 06:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.29029 * 124.91082 * 90.00272 * 3 2 1 5 5 C 1.31784 * 117.11934 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74599 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47594 * 144.97019 * 6 5 4 8 8 C 1.53003 * 109.46926 * 264.96678 * 6 5 4 9 9 N 1.46900 * 109.47672 * 24.96779 * 6 5 4 10 10 C 1.46895 * 111.00238 * 155.00034 * 9 6 5 11 11 C 1.53003 * 109.47121 * 180.02562 * 10 9 6 12 12 H 1.08995 * 109.47354 * 304.99944 * 11 10 9 13 13 C 1.47203 * 109.46998 * 65.00310 * 11 10 9 14 14 N 6.55170 * 132.97831 * 73.99543 * 2 1 3 15 15 C 1.53000 * 109.46985 * 185.00091 * 11 10 9 16 16 C 1.50707 * 109.46826 * 175.00275 * 15 11 10 17 17 H 1.07992 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.37871 * 119.99607 * 180.02562 * 16 15 11 19 19 N 1.31517 * 119.99834 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00395 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47080 * 90.00388 * 20 18 16 22 22 H 1.48499 * 109.47255 * 210.00152 * 20 18 16 23 23 H 1.48499 * 109.47137 * 330.00503 * 20 18 16 24 24 C 1.33639 * 114.50435 * 359.97438 * 5 4 3 25 25 S 1.70976 * 124.91946 * 269.69503 * 3 2 1 26 26 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 29 29 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 30 30 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 31 31 H 1.09006 * 109.46771 * 60.00330 * 8 6 5 32 32 H 1.09007 * 109.47502 * 179.97438 * 8 6 5 33 33 H 1.08995 * 109.47593 * 300.00418 * 8 6 5 34 34 H 1.00908 * 110.99643 * 31.04801 * 9 6 5 35 35 H 1.08996 * 109.47037 * 300.00270 * 10 9 6 36 36 H 1.09006 * 109.47179 * 60.00518 * 10 9 6 37 37 H 1.09006 * 109.47226 * 294.99999 * 15 11 10 38 38 H 1.08996 * 109.47032 * 55.00145 * 15 11 10 39 39 H 0.97007 * 120.00101 * 179.97438 * 19 18 16 40 40 H 1.07994 * 126.03803 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0581 5 6 2.7143 3.3479 0.8794 6 6 3.0414 4.2711 2.0247 7 1 3.8896 4.8998 1.7539 8 6 1.8296 5.1538 2.3304 9 7 3.3805 3.4765 3.2128 10 6 4.2441 4.2371 4.1259 11 6 4.5756 3.3784 5.3481 12 1 3.6512 3.0329 5.8110 13 6 5.3783 2.2178 4.9292 14 7 5.9964 1.3216 4.6075 15 6 5.3703 4.2112 6.3560 16 6 5.5909 3.4053 7.6103 17 1 5.2028 2.4001 7.6815 18 6 6.2874 3.9520 8.6671 19 7 6.4796 3.2490 9.7619 20 14 6.9582 5.6911 8.5442 21 1 5.9401 6.6507 9.0419 22 1 8.1899 5.8058 9.3658 23 1 7.2779 5.9993 7.1271 24 6 2.8433 3.7099 -0.4005 25 16 2.3656 2.3411 -1.4019 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 0.9813 4.5251 2.6013 32 1 2.0659 5.8213 3.1591 33 1 1.5779 5.7434 1.4489 34 1 3.8113 2.6021 2.9521 35 1 5.1662 4.5086 3.6121 36 1 3.7268 5.1415 4.4464 37 1 6.3337 4.4821 5.9241 38 1 4.8135 5.1162 6.5988 39 1 6.9700 3.6334 10.5054 40 1 3.1831 4.6707 -0.7579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171983121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:32 Heat of formation + Delta-G solvation = 54.598620 kcal Electronic energy + Delta-G solvation = -20412.030324 eV Core-core repulsion = 17353.142986 eV Total energy + Delta-G solvation = -3058.887338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31292 -37.58869 -35.78179 -34.26563 -33.53378 -32.10668 -30.38296 -28.85361 -26.85192 -25.76556 -24.03565 -22.36322 -21.59185 -21.08449 -19.83459 -17.78629 -16.92064 -16.79886 -16.02534 -15.59306 -14.99521 -14.88101 -14.50377 -14.32116 -13.86800 -13.45747 -13.29231 -13.18586 -12.74557 -12.66441 -12.42425 -12.35005 -12.12812 -11.97775 -11.91355 -11.68182 -11.42346 -11.34888 -11.22982 -10.97451 -10.80575 -10.40119 -9.92129 -9.77393 -9.70928 -9.59647 -9.30253 -8.93264 -8.59697 -8.32847 -6.08454 -4.08871 0.49454 1.14624 1.50751 2.61237 3.27174 3.35767 3.36663 3.58181 3.62718 3.76570 4.19812 4.39988 4.52178 4.74168 4.78550 4.90136 4.91773 5.08404 5.20753 5.26112 5.27271 5.31979 5.48432 5.51592 5.61232 5.64947 5.66951 5.79172 5.86603 5.98748 6.03672 6.23196 6.24238 6.40149 6.95407 7.03653 7.16960 7.45222 7.65065 7.66737 8.38495 8.45678 8.95633 9.51362 11.04738 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.003173 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.167149 B = 8822.446431 C = 9363.263413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.057 3.943 4 N -0.448 5.448 5 C 0.074 3.926 6 C 0.158 3.842 7 H 0.060 0.940 8 C -0.134 4.134 9 N -0.674 5.674 10 C 0.062 3.938 11 C 0.018 3.982 12 H 0.117 0.883 13 C 0.239 3.761 14 N -0.469 5.469 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.878 3.122 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.260 4.260 25 S 0.103 5.897 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.033 0.967 36 H 0.092 0.908 37 H 0.023 0.977 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 2.167 -24.174 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.222 4.222 4 N -0.162 5.162 5 C -0.059 4.059 6 C 0.046 3.954 7 H 0.078 0.922 8 C -0.192 4.192 9 N -0.307 5.307 10 C -0.068 4.068 11 C -0.004 4.004 12 H 0.135 0.865 13 C -0.078 4.078 14 N -0.145 5.145 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.705 3.295 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.400 4.400 25 S 0.358 5.642 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.168 0.832 35 H 0.052 0.948 36 H 0.110 0.890 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.026 0.535 -24.723 27.498 hybrid contribution 1.324 1.817 0.479 2.299 sum -10.702 2.352 -24.244 26.605 Atomic orbital electron populations 1.21757 0.93385 1.02595 1.02675 1.20248 0.96823 0.87492 1.04410 1.27176 1.02635 1.01844 0.90570 1.66049 1.13747 1.05432 1.30962 1.20387 1.00048 0.91519 0.93918 1.20096 0.97920 0.91530 0.85875 0.92250 1.21784 0.97521 0.98697 1.01244 1.60505 1.48488 1.06843 1.14859 1.22204 0.94764 0.97159 0.92632 1.19048 0.97771 0.88218 0.95363 0.86514 1.29115 0.93004 0.93968 0.91713 1.81003 1.10753 1.11781 1.11012 1.19629 0.95167 0.95555 0.93919 1.21041 1.36040 1.02022 0.97376 0.90764 1.24995 0.95403 0.97649 0.95109 1.69912 1.41204 1.37327 1.05125 0.86813 0.78895 0.85227 0.78590 1.19979 1.21373 1.18913 1.26741 1.13112 1.04375 0.95742 1.83896 1.60957 1.05913 1.13418 0.92581 0.91366 0.91689 0.89787 0.88442 0.91529 0.91463 0.92821 0.83194 0.94828 0.88965 0.95892 0.94691 0.92593 0.80672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.66 16 2 C -0.05 -0.40 6.52 -27.88 -0.18 -0.58 16 3 C 0.06 0.60 6.64 -13.45 -0.09 0.51 16 4 N -0.45 -5.87 9.76 -8.05 -0.08 -5.95 16 5 C 0.07 0.88 5.59 -84.22 -0.47 0.41 16 6 C 0.16 1.86 2.96 -68.86 -0.20 1.65 16 7 H 0.06 0.64 7.80 -51.93 -0.40 0.23 16 8 C -0.13 -1.38 9.40 37.16 0.35 -1.03 16 9 N -0.67 -9.49 6.13 -107.95 -0.66 -10.16 16 10 C 0.06 0.90 4.92 -3.83 -0.02 0.88 16 11 C 0.02 0.33 2.42 -93.40 -0.23 0.10 16 12 H 0.12 2.12 8.14 -51.93 -0.42 1.69 16 13 C 0.24 4.99 12.97 -20.78 -0.27 4.72 16 14 N -0.47 -10.64 18.53 42.12 0.78 -9.86 16 15 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 16 C -0.53 -14.40 9.15 -34.44 -0.32 -14.71 16 17 H 0.07 2.23 7.84 -52.49 -0.41 1.82 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 20 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 24 C -0.26 -2.55 11.14 29.12 0.32 -2.23 16 25 S 0.10 0.91 23.18 -107.50 -2.49 -1.58 16 26 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.66 7.45 -51.92 -0.39 0.27 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.35 5.51 7.03 -39.29 -0.28 5.23 16 35 H 0.03 0.47 8.05 -51.93 -0.42 0.06 16 36 H 0.09 1.17 7.44 -51.93 -0.39 0.78 16 37 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 38 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -32.31 352.22 -7.99 -40.30 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.02 Total: 1.61 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.93 Total: -9.20 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.81 Total: -52.56 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.31 -7.99 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171983121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.896 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds