Wall clock time and date at job start Tue Mar 31 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47012 * 2 1 4 4 N 1.29032 * 124.91841 * 90.00056 * 3 2 1 5 5 C 1.31782 * 117.12721 * 180.02562 * 4 3 2 6 6 C 1.50694 * 122.75155 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47080 * 215.02390 * 6 5 4 8 8 C 1.52997 * 109.47210 * 95.02189 * 6 5 4 9 9 N 1.46903 * 109.47200 * 335.02253 * 6 5 4 10 10 C 1.46900 * 111.00425 * 205.00327 * 9 6 5 11 11 C 1.52994 * 109.47557 * 180.02562 * 10 9 6 12 12 H 1.09008 * 109.46970 * 304.99717 * 11 10 9 13 13 C 1.47205 * 109.47251 * 64.99350 * 11 10 9 14 14 N 7.35015 * 99.02652 * 67.27795 * 2 1 3 15 15 C 1.52997 * 109.47404 * 184.99766 * 11 10 9 16 16 C 1.50701 * 109.47212 * 174.99684 * 15 11 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 11 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.33641 * 114.49580 * 0.22972 * 5 4 3 25 25 S 1.70974 * 124.91668 * 269.99652 * 3 2 1 26 26 H 1.09003 * 109.46615 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47254 * 299.99947 * 1 2 3 28 28 H 1.08999 * 109.47126 * 60.00305 * 1 2 3 29 29 H 1.08998 * 109.47060 * 239.99304 * 2 1 3 30 30 H 1.09007 * 109.46822 * 120.00240 * 2 1 3 31 31 H 1.09000 * 109.47012 * 180.02562 * 8 6 5 32 32 H 1.09004 * 109.47434 * 299.99925 * 8 6 5 33 33 H 1.08998 * 109.47086 * 59.99856 * 8 6 5 34 34 H 1.00905 * 111.00016 * 328.95411 * 9 6 5 35 35 H 1.09001 * 109.46898 * 59.99249 * 10 9 6 36 36 H 1.09009 * 109.46674 * 299.99940 * 10 9 6 37 37 H 1.09002 * 109.47153 * 54.99686 * 15 11 10 38 38 H 1.09001 * 109.46832 * 294.99876 * 15 11 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 40 40 H 1.08000 * 126.03408 * 179.77129 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7132 3.3483 0.8794 6 6 3.0391 4.2720 2.0245 7 1 2.7746 5.2940 1.7535 8 6 4.5363 4.1967 2.3303 9 7 2.2758 3.8673 3.2126 10 6 2.0821 5.0016 4.1257 11 6 1.2856 4.5421 5.3484 12 1 0.3525 4.0824 5.0224 13 6 2.0766 3.5607 6.1088 14 7 2.6832 2.8039 6.6957 15 6 0.9765 5.7476 6.2384 16 6 0.0888 5.3167 7.3774 17 1 -0.2233 4.2860 7.4587 18 6 -0.3240 6.2381 8.3164 19 7 0.0566 7.4931 8.2177 20 14 -1.4237 5.7038 9.7286 21 1 -0.5835 5.2800 10.8773 22 1 -2.2881 6.8391 10.1398 23 1 -2.2739 4.5675 9.2914 24 6 2.8362 3.7122 -0.4006 25 16 2.3586 2.3434 -1.4020 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 4.7720 4.8645 3.1589 32 1 4.8010 3.1746 2.6014 33 1 5.1027 4.4970 1.4487 34 1 1.3911 3.4579 2.9519 35 1 1.5357 5.7925 3.6117 36 1 3.0530 5.3799 4.4461 37 1 0.4683 6.5122 5.6508 38 1 1.9067 6.1535 6.6361 39 1 -0.2342 8.1414 8.8780 40 1 3.1713 4.6747 -0.7581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171983124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:34 Heat of formation + Delta-G solvation = 50.825887 kcal Electronic energy + Delta-G solvation = -20372.717983 eV Core-core repulsion = 17313.667048 eV Total energy + Delta-G solvation = -3059.050936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28080 -37.39954 -35.68171 -34.20185 -33.47894 -32.04132 -30.16150 -28.73659 -26.53515 -25.67834 -23.97042 -22.35495 -21.73259 -21.13208 -19.80758 -17.84358 -16.91983 -16.38844 -15.79971 -15.24264 -15.10210 -14.83828 -14.57070 -14.18248 -13.92868 -13.49117 -13.39995 -12.86593 -12.83593 -12.29594 -12.23739 -12.10766 -12.01424 -11.95225 -11.82051 -11.42411 -11.40683 -11.19974 -11.05010 -10.96076 -10.64993 -10.49410 -10.18440 -9.72269 -9.57603 -9.50684 -9.20465 -8.90346 -8.43642 -8.21543 -6.07518 -4.10283 0.51763 1.16758 1.53028 2.63918 3.31662 3.38042 3.41648 3.78391 3.83155 3.93590 4.26380 4.44541 4.55664 4.79576 4.92607 4.93788 4.98110 5.13740 5.27679 5.30660 5.31446 5.35460 5.53063 5.64364 5.68178 5.69574 5.78801 5.85069 5.90713 6.02324 6.07750 6.30904 6.44533 6.54405 7.13455 7.45055 7.54766 7.57581 7.70291 7.88199 8.26059 8.66845 8.94620 9.55013 11.03445 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.003129 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.456838 B = 8946.260160 C = 9457.577813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.055 3.945 4 N -0.448 5.448 5 C 0.075 3.925 6 C 0.160 3.840 7 H 0.061 0.939 8 C -0.135 4.135 9 N -0.676 5.676 10 C 0.064 3.936 11 C 0.011 3.989 12 H 0.098 0.902 13 C 0.257 3.743 14 N -0.479 5.479 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.259 4.259 25 S 0.101 5.899 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.349 0.651 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -8.281 -23.540 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.223 4.223 4 N -0.161 5.161 5 C -0.057 4.057 6 C 0.048 3.952 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.309 5.309 10 C -0.066 4.066 11 C -0.012 4.012 12 H 0.116 0.884 13 C -0.060 4.060 14 N -0.156 5.156 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.399 4.399 25 S 0.356 5.644 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.168 0.832 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.859 -9.923 -22.813 25.348 hybrid contribution -1.262 1.289 0.797 1.972 sum 3.596 -8.633 -22.016 23.921 Atomic orbital electron populations 1.21769 0.93344 1.02625 1.02810 1.20233 0.96861 0.87524 1.04240 1.27167 1.02691 1.01901 0.90585 1.66056 1.13841 1.05329 1.30911 1.20396 0.99832 0.91555 0.93914 1.20068 0.95724 0.93592 0.85842 0.92083 1.21784 0.93176 1.03230 1.01156 1.60462 1.24984 1.30713 1.14742 1.22167 1.00565 0.91487 0.92365 1.19183 0.94897 0.94341 0.92731 0.88436 1.28704 0.92635 0.92661 0.92009 1.80871 1.11213 1.12052 1.11426 1.19164 0.97727 0.90176 0.93603 1.21155 1.30456 0.95317 1.09399 0.92491 1.24951 0.96263 0.94871 0.97901 1.69939 1.45236 1.02057 1.35877 0.86593 0.80594 0.78237 0.82664 1.20634 1.21134 1.19740 1.26750 1.13048 1.04353 0.95717 1.83897 1.61106 1.05935 1.13446 0.91397 0.91592 0.92516 0.89862 0.88567 0.91634 0.91766 0.92816 0.83171 0.93393 0.90421 0.94505 0.95550 0.92836 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.05 -0.37 6.52 -27.88 -0.18 -0.55 16 3 C 0.06 0.57 6.64 -13.46 -0.09 0.48 16 4 N -0.45 -5.75 9.76 -8.06 -0.08 -5.83 16 5 C 0.08 0.90 5.59 -84.23 -0.47 0.42 16 6 C 0.16 1.95 2.96 -68.87 -0.20 1.74 16 7 H 0.06 0.66 7.80 -51.93 -0.40 0.26 16 8 C -0.14 -1.60 9.40 37.16 0.35 -1.25 16 9 N -0.68 -9.73 5.83 -107.96 -0.63 -10.36 16 10 C 0.06 0.98 4.85 -3.83 -0.02 0.96 16 11 C 0.01 0.20 2.35 -93.41 -0.22 -0.02 16 12 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 13 C 0.26 5.58 13.66 -20.83 -0.28 5.29 16 14 N -0.48 -11.29 18.52 42.06 0.78 -10.51 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 16 C -0.53 -14.18 8.60 -34.44 -0.30 -14.48 16 17 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.26 -2.51 11.14 29.12 0.32 -2.18 16 25 S 0.10 0.87 23.18 -107.50 -2.49 -1.63 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.35 5.03 7.95 -39.29 -0.31 4.72 16 35 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.08 1.21 7.43 -51.92 -0.39 0.82 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -31.58 356.98 -8.36 -39.94 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.09 Total: -0.51 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.94 Total: -8.01 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.81 Total: -51.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.58 -8.36 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171983124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.769 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds