Wall clock time and date at job start Tue Mar 31 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47012 * 2 1 4 4 N 1.29032 * 124.91841 * 90.00056 * 3 2 1 5 5 C 1.31782 * 117.12721 * 180.02562 * 4 3 2 6 6 C 1.50694 * 122.75155 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47080 * 215.02390 * 6 5 4 8 8 C 1.52997 * 109.47210 * 95.02189 * 6 5 4 9 9 N 1.46903 * 109.47200 * 335.02253 * 6 5 4 10 10 C 1.46900 * 111.00425 * 205.00327 * 9 6 5 11 11 C 1.52994 * 109.47557 * 180.02562 * 10 9 6 12 12 H 1.09008 * 109.46970 * 304.99717 * 11 10 9 13 13 C 1.47205 * 109.47251 * 64.99350 * 11 10 9 14 14 N 7.35015 * 99.02652 * 67.27795 * 2 1 3 15 15 C 1.52997 * 109.47404 * 184.99766 * 11 10 9 16 16 C 1.50701 * 109.47212 * 174.99684 * 15 11 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 11 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.33641 * 114.49580 * 0.22972 * 5 4 3 25 25 S 1.70974 * 124.91668 * 269.99652 * 3 2 1 26 26 H 1.09003 * 109.46615 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47254 * 299.99947 * 1 2 3 28 28 H 1.08999 * 109.47126 * 60.00305 * 1 2 3 29 29 H 1.08998 * 109.47060 * 239.99304 * 2 1 3 30 30 H 1.09007 * 109.46822 * 120.00240 * 2 1 3 31 31 H 1.09000 * 109.47012 * 180.02562 * 8 6 5 32 32 H 1.09004 * 109.47434 * 299.99925 * 8 6 5 33 33 H 1.08998 * 109.47086 * 59.99856 * 8 6 5 34 34 H 1.00905 * 111.00016 * 328.95411 * 9 6 5 35 35 H 1.09001 * 109.46898 * 59.99249 * 10 9 6 36 36 H 1.09009 * 109.46674 * 299.99940 * 10 9 6 37 37 H 1.09002 * 109.47153 * 54.99686 * 15 11 10 38 38 H 1.09001 * 109.46832 * 294.99876 * 15 11 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 40 40 H 1.08000 * 126.03408 * 179.77129 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7132 3.3483 0.8794 6 6 3.0391 4.2720 2.0245 7 1 2.7746 5.2940 1.7535 8 6 4.5363 4.1967 2.3303 9 7 2.2758 3.8673 3.2126 10 6 2.0821 5.0016 4.1257 11 6 1.2856 4.5421 5.3484 12 1 0.3525 4.0824 5.0224 13 6 2.0766 3.5607 6.1088 14 7 2.6832 2.8039 6.6957 15 6 0.9765 5.7476 6.2384 16 6 0.0888 5.3167 7.3774 17 1 -0.2233 4.2860 7.4587 18 6 -0.3240 6.2381 8.3164 19 7 0.0566 7.4931 8.2177 20 14 -1.4237 5.7038 9.7286 21 1 -0.5835 5.2800 10.8773 22 1 -2.2881 6.8391 10.1398 23 1 -2.2739 4.5675 9.2914 24 6 2.8362 3.7122 -0.4006 25 16 2.3586 2.3434 -1.4020 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 4.7720 4.8645 3.1589 32 1 4.8010 3.1746 2.6014 33 1 5.1027 4.4970 1.4487 34 1 1.3911 3.4579 2.9519 35 1 1.5357 5.7925 3.6117 36 1 3.0530 5.3799 4.4461 37 1 0.4683 6.5122 5.6508 38 1 1.9067 6.1535 6.6361 39 1 -0.2342 8.1414 8.8780 40 1 3.1713 4.6747 -0.7581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171983124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:33 Heat of formation + Delta-G solvation = 31.388061 kcal Electronic energy + Delta-G solvation = -20373.560871 eV Core-core repulsion = 17313.667048 eV Total energy + Delta-G solvation = -3059.893823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08104 -38.80090 -37.01593 -35.59838 -34.81399 -33.59379 -31.35092 -29.67053 -28.11049 -26.54688 -25.10038 -23.71366 -23.30565 -21.98599 -20.57074 -18.88053 -18.49763 -18.12269 -16.73210 -16.62593 -16.11304 -16.00911 -15.60954 -15.21432 -15.20674 -14.70148 -14.43938 -14.16688 -14.08607 -13.76880 -13.55754 -13.45122 -13.18066 -13.01303 -12.95525 -12.81401 -12.55724 -12.47916 -12.41834 -12.32927 -12.03649 -11.95229 -11.82637 -11.38034 -11.13008 -10.55601 -10.46779 -10.30510 -9.64177 -9.28757 -8.19558 -6.27583 -0.20946 0.47992 0.79752 1.39686 1.41953 1.51203 1.84193 2.09293 2.16828 2.41584 3.02818 3.15769 3.23684 3.37480 3.80324 4.14724 4.15782 4.25276 4.35149 4.37139 4.41589 4.46759 4.57068 4.69035 4.75142 4.75296 4.86944 4.93743 4.99991 5.05623 5.09143 5.20375 5.33489 5.36937 5.46669 5.62217 5.79182 6.05045 6.22245 6.47919 6.83204 6.92470 6.94564 7.40764 8.91378 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.003129 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.456838 B = 8946.260160 C = 9457.577813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.038 3.962 4 N -0.486 5.486 5 C 0.052 3.948 6 C 0.161 3.839 7 H 0.079 0.921 8 C -0.130 4.130 9 N -0.687 5.687 10 C 0.077 3.923 11 C 0.021 3.979 12 H 0.113 0.887 13 C 0.267 3.733 14 N -0.515 5.515 15 C 0.040 3.960 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.948 3.052 21 H -0.284 1.284 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.258 4.258 25 S 0.151 5.849 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.348 0.652 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -8.472 -25.571 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C -0.240 4.240 4 N -0.201 5.201 5 C -0.080 4.080 6 C 0.049 3.951 7 H 0.097 0.903 8 C -0.188 4.188 9 N -0.320 5.320 10 C -0.053 4.053 11 C -0.001 4.001 12 H 0.131 0.869 13 C -0.049 4.049 14 N -0.193 5.193 15 C 0.001 3.999 16 C -0.578 4.578 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.774 3.226 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.398 4.398 25 S 0.407 5.593 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.353 -10.127 -24.863 27.197 hybrid contribution -1.083 1.326 1.343 2.176 sum 3.270 -8.801 -23.520 25.324 Atomic orbital electron populations 1.21740 0.92899 1.03440 1.02047 1.20347 0.97186 0.86536 1.04880 1.27552 1.02526 1.02817 0.91155 1.66036 1.15244 1.06185 1.32659 1.20351 1.01553 0.91597 0.94496 1.20106 0.95143 0.94680 0.85208 0.90333 1.21744 0.93664 1.01505 1.01921 1.60390 1.25195 1.30425 1.16025 1.21974 0.99974 0.92186 0.91169 1.19158 0.95937 0.91994 0.93040 0.86902 1.29242 0.91993 0.92348 0.91347 1.80863 1.12601 1.13310 1.12477 1.18979 0.95842 0.91709 0.93394 1.21553 1.30663 0.95085 1.10491 0.92959 1.25701 0.97683 0.95019 1.00294 1.70027 1.46433 1.02918 1.36870 0.85703 0.79058 0.78271 0.79616 1.21021 1.20212 1.18921 1.27083 1.11683 1.05688 0.95332 1.83685 1.59692 1.04409 1.11522 0.89822 0.93743 0.91791 0.87447 0.89691 0.92244 0.94217 0.90555 0.83251 0.91351 0.90762 0.94522 0.97946 0.92685 0.78357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 71.98 0.71 -1.16 16 2 C -0.05 -0.70 6.52 29.85 0.19 -0.51 16 3 C 0.04 0.73 6.64 88.52 0.59 1.32 16 4 N -0.49 -12.22 9.76 -179.41 -1.75 -13.97 16 5 C 0.05 1.17 5.59 41.52 0.23 1.40 16 6 C 0.16 3.69 2.96 44.17 0.13 3.82 16 7 H 0.08 1.52 7.80 -2.39 -0.02 1.50 16 8 C -0.13 -2.97 9.40 71.98 0.68 -2.30 16 9 N -0.69 -19.28 5.83 -495.46 -2.89 -22.17 16 10 C 0.08 2.28 4.85 86.30 0.42 2.69 16 11 C 0.02 0.77 2.35 -12.60 -0.03 0.74 16 12 H 0.11 3.92 8.14 -2.38 -0.02 3.91 16 13 C 0.27 11.63 13.66 89.47 1.22 12.85 16 14 N -0.51 -24.55 18.52 19.98 0.37 -24.18 16 15 C 0.04 1.86 4.42 29.85 0.13 1.99 16 16 C -0.54 -29.16 8.60 25.60 0.22 -28.94 16 17 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 18 C 0.01 0.67 5.46 84.66 0.46 1.13 16 19 N -0.92 -53.38 13.29 21.45 0.28 -53.09 16 20 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 24 C -0.26 -4.36 11.14 66.78 0.74 -3.62 16 25 S 0.15 2.22 23.18 -56.49 -1.31 0.91 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.40 7.45 -2.39 -0.02 1.38 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.35 9.84 7.95 -89.69 -0.71 9.13 16 35 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 36 H 0.07 2.26 7.43 -2.38 -0.02 2.24 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -67.75 356.98 2.76 -64.99 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.32 Total: 12.03 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.70 Total: -10.58 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.98 Total: -113.40 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.31 Total: 0.91 kcal Total: -67.75 2.76 -64.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171983124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.382 kcal (2) G-P(sol) polarization free energy of solvation -67.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds