Wall clock time and date at job start Tue Mar 31 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00227 * 2 1 4 4 O 1.20825 * 120.00110 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99974 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47144 * 179.97438 * 5 3 2 7 7 C 1.36932 * 119.99924 * 270.00205 * 6 5 3 8 8 H 1.08007 * 119.99670 * 191.21628 * 7 6 5 9 9 C 1.38807 * 120.00521 * 11.21947 * 7 6 5 10 10 N 1.31624 * 119.99817 * 25.46005 * 9 7 6 11 11 Si 1.86800 * 120.00419 * 205.45942 * 9 7 6 12 12 H 1.48500 * 109.46926 * 60.00204 * 11 9 7 13 13 H 1.48498 * 109.47123 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47161 * 300.00052 * 11 9 7 15 15 C 1.46502 * 119.99615 * 90.00306 * 6 5 3 16 16 C 1.53002 * 109.46932 * 84.45907 * 15 6 5 17 17 O 1.42901 * 109.47261 * 65.00072 * 16 15 6 18 18 C 1.35898 * 116.99726 * 180.02562 * 17 16 15 19 19 C 1.38745 * 120.05629 * 0.02562 * 18 17 16 20 20 C 1.38132 * 119.94180 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.05350 * 359.74475 * 20 19 18 22 22 C 1.38250 * 120.11222 * 0.51223 * 21 20 19 23 23 C 1.50696 * 119.96858 * 179.76609 * 22 21 20 24 24 C 1.38163 * 120.05370 * 359.48998 * 22 21 20 25 25 H 1.09004 * 109.46922 * 300.00112 * 1 2 3 26 26 H 1.09002 * 109.46951 * 59.99532 * 1 2 3 27 27 H 1.08994 * 109.47509 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46928 * 60.00350 * 5 3 2 29 29 H 1.08997 * 109.47207 * 300.00309 * 5 3 2 30 30 H 0.96998 * 119.99906 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.46865 * 324.45552 * 15 6 5 32 32 H 1.09002 * 109.46781 * 204.45564 * 15 6 5 33 33 H 1.08997 * 109.47219 * 304.99437 * 16 15 6 34 34 H 1.09001 * 109.46489 * 184.99800 * 16 15 6 35 35 H 1.07992 * 120.03278 * 359.96000 * 19 18 17 36 36 H 1.07998 * 119.96767 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.94572 * 180.27876 * 21 20 19 38 38 H 1.09002 * 109.47092 * 269.71972 * 23 22 21 39 39 H 1.08998 * 109.47832 * 29.72457 * 23 22 21 40 40 H 1.09001 * 109.46902 * 149.72157 * 23 22 21 41 41 H 1.07998 * 120.02230 * 180.23720 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6796 -0.0002 7 6 4.1765 3.3354 -1.1864 8 1 4.6528 4.3047 -1.1957 9 6 3.7615 2.7546 -2.3768 10 7 2.7806 1.8769 -2.3740 11 14 4.5950 3.2185 -3.9829 12 1 6.0398 2.8844 -3.9053 13 1 3.9722 2.4637 -5.0999 14 1 4.4360 4.6758 -4.2202 15 6 4.1891 3.3828 1.2683 16 6 5.6038 3.1048 1.7803 17 8 6.5568 3.6673 0.8761 18 6 7.8703 3.5078 1.1862 19 6 8.2345 2.8233 2.3368 20 6 9.5703 2.6621 2.6494 21 6 10.5442 3.1776 1.8139 22 6 10.1837 3.8645 0.6696 23 6 11.2476 4.4295 -0.2358 24 6 8.8490 4.0285 0.3525 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9564 0.7805 -0.8892 29 1 3.9558 0.7808 0.8908 30 1 2.4904 1.4713 -3.2060 31 1 3.4621 3.0324 2.0009 32 1 4.0624 4.4544 1.1145 33 1 5.7601 2.0283 1.8496 34 1 5.7284 3.5542 2.7655 35 1 7.4744 2.4172 2.9876 36 1 9.8542 2.1290 3.5447 37 1 11.5881 3.0466 2.0577 38 1 11.4866 5.4466 0.0749 39 1 12.1430 3.8110 -0.1746 40 1 10.8828 4.4396 -1.2629 41 1 8.5680 4.5619 -0.5435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174568672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:55 Heat of formation + Delta-G solvation = -70.569974 kcal Electronic energy + Delta-G solvation = -23720.634816 eV Core-core repulsion = 20181.274138 eV Total energy + Delta-G solvation = -3539.360677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.79370 -38.90671 -37.46036 -35.86284 -34.49974 -32.36858 -31.80921 -30.13318 -28.76084 -27.59705 -26.80895 -25.94439 -23.78675 -22.29134 -21.61041 -20.43513 -19.50956 -17.51995 -16.91383 -16.27681 -15.88113 -15.64874 -15.53765 -15.13702 -15.01433 -14.53262 -14.16099 -13.73932 -13.46402 -13.32942 -13.09922 -12.98524 -12.47434 -12.24147 -12.05882 -11.92189 -11.72739 -11.36389 -11.30026 -11.09548 -10.96895 -10.79350 -10.55749 -10.43851 -10.29889 -10.10087 -9.83343 -9.57551 -9.08928 -8.61682 -8.48760 -7.84793 -7.09385 -5.88403 -3.15052 1.49409 1.69567 3.41682 3.47500 3.50477 3.70641 3.88728 3.95914 4.06930 4.52099 4.92847 4.98343 5.17601 5.23864 5.33665 5.35842 5.48579 5.58377 5.60357 5.69576 5.76820 5.81119 5.82632 5.87038 5.88227 5.98556 6.12008 6.21226 6.26191 6.28519 6.53968 6.56735 6.65009 6.74114 6.74568 7.01138 7.03767 7.74028 7.84373 7.91485 8.18687 9.06569 9.42436 9.74412 10.14621 11.23574 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.004597 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.550291 B = 6089.852381 C = 7315.437390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.467 3.533 4 O -0.505 6.505 5 C 0.189 3.811 6 N -0.562 5.562 7 C -0.238 4.238 8 H 0.083 0.917 9 C -0.002 4.002 10 N -0.905 5.905 11 Si 0.906 3.094 12 H -0.283 1.283 13 H -0.293 1.293 14 H -0.284 1.284 15 C 0.146 3.854 16 C 0.042 3.958 17 O -0.284 6.284 18 C 0.148 3.852 19 C -0.222 4.222 20 C -0.079 4.079 21 C -0.174 4.174 22 C -0.051 4.051 23 C -0.113 4.113 24 C -0.158 4.158 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.257 0.743 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.039 -1.052 9.161 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.302 6.302 3 C 0.307 3.693 4 O -0.390 6.390 5 C 0.060 3.940 6 N -0.280 5.280 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.199 4.199 10 N -0.551 5.551 11 Si 0.736 3.264 12 H -0.210 1.210 13 H -0.219 1.219 14 H -0.210 1.210 15 C 0.018 3.982 16 C -0.036 4.036 17 O -0.196 6.196 18 C 0.101 3.899 19 C -0.241 4.241 20 C -0.097 4.097 21 C -0.192 4.192 22 C -0.051 4.051 23 C -0.170 4.170 24 C -0.177 4.177 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.622 -0.689 8.827 13.076 hybrid contribution -0.133 0.054 -0.775 0.788 sum 9.489 -0.635 8.052 12.462 Atomic orbital electron populations 1.22832 0.79952 1.01175 1.01205 1.86538 1.20887 1.36890 1.85868 1.25453 0.93393 0.80204 0.70299 1.90456 1.66587 1.36437 1.45528 1.20332 0.85705 0.86731 1.01245 1.44010 1.75056 1.07212 1.01750 1.19241 1.31542 1.03303 0.82617 0.89899 1.24731 0.97097 1.00033 0.98067 1.69793 1.25261 1.33459 1.26564 0.86273 0.79573 0.77754 0.82760 1.20977 1.21883 1.21045 1.20880 0.90094 0.98212 0.88986 1.23834 0.90930 0.97538 0.91333 1.86336 1.11435 1.72760 1.49066 1.19216 0.85047 0.93058 0.92539 1.21255 0.97355 1.06287 0.99190 1.20846 0.92331 0.97902 0.98634 1.20797 0.98991 1.03163 0.96272 1.19655 0.93574 0.96616 0.95294 1.20786 0.96773 1.00712 0.98713 1.20345 0.90674 1.05360 1.01318 0.93754 0.92853 0.90259 0.87344 0.93142 0.93299 0.92071 0.91481 0.92686 0.93247 0.85741 0.86374 0.86581 0.91195 0.91626 0.91334 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.41 10.56 -39.25 -0.41 -8.82 16 3 C 0.47 11.43 5.95 36.01 0.21 11.65 16 4 O -0.51 -13.96 15.71 -18.75 -0.29 -14.26 16 5 C 0.19 4.39 5.57 -5.19 -0.03 4.36 16 6 N -0.56 -13.49 1.98 -174.60 -0.34 -13.83 16 7 C -0.24 -6.42 9.43 -15.06 -0.14 -6.56 16 8 H 0.08 2.24 7.95 -52.48 -0.42 1.83 16 9 C 0.00 -0.06 4.84 -17.43 -0.08 -0.15 16 10 N -0.91 -25.87 8.91 55.49 0.49 -25.38 16 11 Si 0.91 22.08 29.62 -169.99 -5.04 17.04 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.15 2.87 6.07 -4.04 -0.02 2.84 16 16 C 0.04 0.69 5.08 37.16 0.19 0.88 16 17 O -0.28 -5.42 9.87 -19.42 -0.19 -5.62 16 18 C 0.15 2.51 6.69 -39.22 -0.26 2.25 16 19 C -0.22 -3.21 9.04 -39.43 -0.36 -3.57 16 20 C -0.08 -1.00 10.04 -39.60 -0.40 -1.39 16 21 C -0.17 -2.15 9.70 -39.56 -0.38 -2.54 16 22 C -0.05 -0.68 5.88 -104.65 -0.62 -1.30 16 23 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 24 C -0.16 -2.51 9.64 -39.43 -0.38 -2.89 16 25 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.11 2.73 6.51 -51.93 -0.34 2.40 16 29 H 0.05 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16 32 H 0.07 1.36 8.00 -51.93 -0.42 0.95 16 33 H 0.05 0.89 7.64 -51.93 -0.40 0.49 16 34 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 35 H 0.12 1.62 6.30 -52.49 -0.33 1.28 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -32.53 347.88 -7.46 -39.99 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.07 Total: 1.00 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.84 Total: 4.63 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.15 Total: -39.21 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.90 Total: -28.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.04 Total: 17.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.53 -7.46 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174568672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.577 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds