Wall clock time and date at job start Tue Mar 31 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00227 * 2 1 4 4 O 1.20825 * 120.00110 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99974 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47144 * 179.97438 * 5 3 2 7 7 C 1.36932 * 119.99924 * 270.00205 * 6 5 3 8 8 H 1.08007 * 119.99670 * 191.21628 * 7 6 5 9 9 C 1.38807 * 120.00521 * 11.21947 * 7 6 5 10 10 N 1.31624 * 119.99817 * 25.46005 * 9 7 6 11 11 Si 1.86800 * 120.00419 * 205.45942 * 9 7 6 12 12 H 1.48500 * 109.46926 * 60.00204 * 11 9 7 13 13 H 1.48498 * 109.47123 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47161 * 300.00052 * 11 9 7 15 15 C 1.46502 * 119.99615 * 90.00306 * 6 5 3 16 16 C 1.53002 * 109.46932 * 84.45907 * 15 6 5 17 17 O 1.42901 * 109.47261 * 65.00072 * 16 15 6 18 18 C 1.35898 * 116.99726 * 180.02562 * 17 16 15 19 19 C 1.38745 * 120.05629 * 0.02562 * 18 17 16 20 20 C 1.38132 * 119.94180 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.05350 * 359.74475 * 20 19 18 22 22 C 1.38250 * 120.11222 * 0.51223 * 21 20 19 23 23 C 1.50696 * 119.96858 * 179.76609 * 22 21 20 24 24 C 1.38163 * 120.05370 * 359.48998 * 22 21 20 25 25 H 1.09004 * 109.46922 * 300.00112 * 1 2 3 26 26 H 1.09002 * 109.46951 * 59.99532 * 1 2 3 27 27 H 1.08994 * 109.47509 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46928 * 60.00350 * 5 3 2 29 29 H 1.08997 * 109.47207 * 300.00309 * 5 3 2 30 30 H 0.96998 * 119.99906 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.46865 * 324.45552 * 15 6 5 32 32 H 1.09002 * 109.46781 * 204.45564 * 15 6 5 33 33 H 1.08997 * 109.47219 * 304.99437 * 16 15 6 34 34 H 1.09001 * 109.46489 * 184.99800 * 16 15 6 35 35 H 1.07992 * 120.03278 * 359.96000 * 19 18 17 36 36 H 1.07998 * 119.96767 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.94572 * 180.27876 * 21 20 19 38 38 H 1.09002 * 109.47092 * 269.71972 * 23 22 21 39 39 H 1.08998 * 109.47832 * 29.72457 * 23 22 21 40 40 H 1.09001 * 109.46902 * 149.72157 * 23 22 21 41 41 H 1.07998 * 120.02230 * 180.23720 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6796 -0.0002 7 6 4.1765 3.3354 -1.1864 8 1 4.6528 4.3047 -1.1957 9 6 3.7615 2.7546 -2.3768 10 7 2.7806 1.8769 -2.3740 11 14 4.5950 3.2185 -3.9829 12 1 6.0398 2.8844 -3.9053 13 1 3.9722 2.4637 -5.0999 14 1 4.4360 4.6758 -4.2202 15 6 4.1891 3.3828 1.2683 16 6 5.6038 3.1048 1.7803 17 8 6.5568 3.6673 0.8761 18 6 7.8703 3.5078 1.1862 19 6 8.2345 2.8233 2.3368 20 6 9.5703 2.6621 2.6494 21 6 10.5442 3.1776 1.8139 22 6 10.1837 3.8645 0.6696 23 6 11.2476 4.4295 -0.2358 24 6 8.8490 4.0285 0.3525 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9564 0.7805 -0.8892 29 1 3.9558 0.7808 0.8908 30 1 2.4904 1.4713 -3.2060 31 1 3.4621 3.0324 2.0009 32 1 4.0624 4.4544 1.1145 33 1 5.7601 2.0283 1.8496 34 1 5.7284 3.5542 2.7655 35 1 7.4744 2.4172 2.9876 36 1 9.8542 2.1290 3.5447 37 1 11.5881 3.0466 2.0577 38 1 11.4866 5.4466 0.0749 39 1 12.1430 3.8110 -0.1746 40 1 10.8828 4.4396 -1.2629 41 1 8.5680 4.5619 -0.5435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174568672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:54 Heat of formation + Delta-G solvation = -88.599831 kcal Electronic energy + Delta-G solvation = -23721.416649 eV Core-core repulsion = 20181.274138 eV Total energy + Delta-G solvation = -3540.142511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98964 -40.71993 -38.71550 -37.57968 -36.38320 -33.70215 -33.30648 -31.52445 -30.25561 -29.25476 -27.78345 -27.63857 -25.46151 -23.37616 -23.15034 -21.86996 -21.15532 -18.95025 -18.58174 -18.11826 -17.41669 -17.02281 -16.81379 -16.69795 -16.61632 -16.29371 -15.46731 -15.26264 -14.90528 -14.59485 -14.37753 -14.10607 -13.97749 -13.88295 -13.50543 -13.14857 -13.00565 -12.88766 -12.70833 -12.66131 -12.45108 -12.36194 -12.26757 -12.05252 -11.94960 -11.59383 -11.51882 -11.35435 -11.01812 -10.51610 -9.65968 -9.02733 -8.98564 -7.96106 -5.22075 0.44809 0.61430 1.44359 1.47467 1.54679 2.02330 2.33025 2.47682 2.56881 2.89856 3.23971 3.51409 3.96197 3.99917 4.23614 4.25316 4.32409 4.39253 4.45233 4.46837 4.48168 4.52005 4.53673 4.64063 4.69376 4.74037 4.85085 4.90821 4.94146 5.08139 5.10266 5.16910 5.29161 5.50396 5.57981 5.66642 5.72394 5.97406 6.01408 6.20101 6.71381 7.04104 7.52500 7.79774 8.14345 9.13331 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.004597 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.550291 B = 6089.852381 C = 7315.437390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.387 6.387 3 C 0.470 3.530 4 O -0.544 6.544 5 C 0.190 3.810 6 N -0.576 5.576 7 C -0.236 4.236 8 H 0.072 0.928 9 C -0.051 4.051 10 N -0.927 5.927 11 Si 0.961 3.039 12 H -0.281 1.281 13 H -0.296 1.296 14 H -0.285 1.285 15 C 0.143 3.857 16 C 0.052 3.948 17 O -0.320 6.320 18 C 0.118 3.882 19 C -0.228 4.228 20 C -0.077 4.077 21 C -0.171 4.171 22 C -0.055 4.055 23 C -0.112 4.112 24 C -0.187 4.187 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.248 0.752 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.006 -2.000 10.962 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.304 6.304 3 C 0.312 3.688 4 O -0.432 6.432 5 C 0.060 3.940 6 N -0.295 5.295 7 C -0.366 4.366 8 H 0.090 0.910 9 C -0.245 4.245 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.207 1.207 13 H -0.222 1.222 14 H -0.211 1.211 15 C 0.017 3.983 16 C -0.025 4.025 17 O -0.233 6.233 18 C 0.072 3.928 19 C -0.247 4.247 20 C -0.095 4.095 21 C -0.189 4.189 22 C -0.055 4.055 23 C -0.169 4.169 24 C -0.206 4.206 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.143 0.857 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.156 0.844 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.613 -1.644 10.661 15.850 hybrid contribution -0.698 0.343 -1.239 1.462 sum 10.915 -1.301 9.422 14.478 Atomic orbital electron populations 1.23138 0.77614 1.04054 1.00658 1.86493 1.23147 1.35438 1.85278 1.25623 0.93900 0.80210 0.69104 1.90430 1.67530 1.37786 1.47488 1.20339 0.85181 0.86531 1.01942 1.44135 1.75366 1.07729 1.02310 1.19348 1.30250 1.02865 0.84152 0.91014 1.25317 0.97883 1.00910 1.00436 1.69932 1.26456 1.34836 1.26294 0.85420 0.78601 0.77161 0.79799 1.20741 1.22237 1.21100 1.21053 0.92515 0.97024 0.87674 1.23612 0.88679 0.98167 0.92054 1.86256 1.12872 1.73747 1.50440 1.19483 0.84118 0.95016 0.94197 1.21464 0.98821 1.05937 0.98466 1.21283 0.91472 0.97154 0.99560 1.21237 1.00697 1.01650 0.95320 1.20031 0.93054 0.96243 0.96177 1.20851 0.96526 1.01742 0.97764 1.20497 0.92113 1.06625 1.01358 0.92842 0.94909 0.85661 0.89701 0.89099 0.94247 0.90440 0.92981 0.91950 0.90036 0.84414 0.83061 0.83384 0.89851 0.89485 0.91894 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.57 16 2 O -0.39 -16.63 10.56 -51.39 -0.54 -17.17 16 3 C 0.47 23.06 5.95 71.24 0.42 23.49 16 4 O -0.54 -30.49 15.71 21.97 0.35 -30.15 16 5 C 0.19 8.77 5.57 85.63 0.48 9.25 16 6 N -0.58 -27.98 1.98 -706.33 -1.40 -29.37 16 7 C -0.24 -13.06 9.43 84.03 0.79 -12.27 16 8 H 0.07 4.03 7.95 -2.91 -0.02 4.01 16 9 C -0.05 -2.90 4.84 84.86 0.41 -2.49 16 10 N -0.93 -54.35 8.91 21.65 0.19 -54.16 16 11 Si 0.96 46.72 29.62 68.60 2.03 48.76 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 15 C 0.14 5.61 6.07 86.38 0.52 6.14 16 16 C 0.05 1.68 5.08 71.98 0.37 2.05 16 17 O -0.32 -12.37 9.87 -92.40 -0.91 -13.28 16 18 C 0.12 3.97 6.69 22.50 0.15 4.12 16 19 C -0.23 -6.15 9.04 22.37 0.20 -5.95 16 20 C -0.08 -1.68 10.04 22.26 0.22 -1.46 16 21 C -0.17 -3.67 9.70 22.28 0.22 -3.45 16 22 C -0.05 -1.38 5.88 -19.88 -0.12 -1.50 16 23 C -0.11 -2.07 10.01 71.23 0.71 -1.35 16 24 C -0.19 -6.01 9.64 22.37 0.22 -5.79 16 25 H 0.05 1.75 8.13 -2.38 -0.02 1.73 16 26 H 0.03 1.26 8.13 -2.39 -0.02 1.24 16 27 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.09 4.36 6.51 -2.38 -0.02 4.34 16 29 H 0.09 3.39 8.05 -2.39 -0.02 3.37 16 30 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 32 H 0.05 2.16 8.00 -2.39 -0.02 2.14 16 33 H 0.06 1.91 7.64 -2.39 -0.02 1.89 16 34 H 0.08 2.10 7.66 -2.39 -0.02 2.08 16 35 H 0.14 3.22 6.30 -2.91 -0.02 3.20 16 36 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 40 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 41 H 0.11 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -72.51 347.88 6.53 -65.98 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.01 Total: 16.05 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.79 Total: 13.35 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.20 Total: -83.53 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -1.11 Total: -60.60 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.76 kcal Total: -72.51 6.53 -65.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174568672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.621 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds