Wall clock time and date at job start Tue Mar 31 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30176 * 126.80352 * 2 1 4 4 O 1.20923 * 111.60495 * 179.97438 * 3 2 1 5 5 C 1.34048 * 111.56589 * 359.75948 * 4 3 2 6 6 C 1.50696 * 126.77374 * 180.28502 * 5 4 3 7 7 C 1.35449 * 106.44743 * 0.38296 * 5 4 3 8 8 C 1.50699 * 128.00683 * 179.91231 * 7 5 4 9 9 H 1.08998 * 109.46541 * 179.67595 * 8 7 5 10 10 C 1.52998 * 109.47052 * 299.67642 * 8 7 5 11 11 C 1.50699 * 109.47189 * 59.67728 * 8 7 5 12 12 O 1.20830 * 119.99759 * 359.97438 * 11 8 7 13 13 O 1.34228 * 119.99828 * 179.97438 * 11 8 7 14 14 C 1.45196 * 116.99816 * 179.97438 * 13 11 8 15 15 C 1.53001 * 109.47034 * 180.02562 * 14 13 11 16 16 C 1.50706 * 115.54621 * 294.88852 * 15 14 13 17 17 H 1.07997 * 119.99622 * 94.75372 * 16 15 14 18 18 C 1.37877 * 120.00171 * 275.02924 * 16 15 14 19 19 N 1.31515 * 119.99847 * 6.35967 * 18 16 15 20 20 Si 1.86799 * 119.99895 * 186.36477 * 18 16 15 21 21 H 1.48506 * 109.47157 * 89.99968 * 20 18 16 22 22 H 1.48498 * 109.47145 * 209.99884 * 20 18 16 23 23 H 1.48499 * 109.47267 * 330.00222 * 20 18 16 24 24 C 1.52991 * 117.50167 * 80.56490 * 15 14 13 25 25 C 1.52995 * 117.50024 * 149.22520 * 15 14 13 26 26 H 1.08994 * 109.47069 * 270.03037 * 1 2 3 27 27 H 1.08998 * 109.46558 * 30.02775 * 1 2 3 28 28 H 1.08998 * 109.46933 * 150.02470 * 1 2 3 29 29 H 1.08999 * 109.47527 * 270.11169 * 6 5 4 30 30 H 1.08998 * 109.47563 * 30.11886 * 6 5 4 31 31 H 1.09002 * 109.46873 * 150.11390 * 6 5 4 32 32 H 1.09009 * 109.46948 * 299.99883 * 10 8 7 33 33 H 1.08997 * 109.47139 * 59.99836 * 10 8 7 34 34 H 1.08996 * 109.47282 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47384 * 60.00378 * 14 13 11 36 36 H 1.09003 * 109.47194 * 300.00157 * 14 13 11 37 37 H 0.96995 * 119.99526 * 179.97438 * 19 18 16 38 38 H 1.09007 * 117.49464 * 215.00287 * 24 15 14 39 39 H 1.09000 * 117.50368 * 0.02562 * 24 15 14 40 40 H 1.09000 * 117.49974 * 359.97095 * 25 15 14 41 41 H 1.09007 * 117.50181 * 144.96609 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6069 0.0061 6 6 4.9022 -1.3696 0.0145 7 6 2.3540 -1.1321 0.0007 8 6 1.9591 -2.5865 0.0017 9 1 0.8721 -2.6677 0.0019 10 6 2.5213 -3.2685 -1.2471 11 6 2.5132 -3.2566 1.2326 12 8 3.1626 -2.6187 2.0271 13 8 2.2853 -4.5620 1.4461 14 6 2.8499 -5.1411 2.6520 15 6 2.4881 -6.6260 2.7224 16 6 1.0201 -6.9307 2.8747 17 1 0.4182 -7.1374 2.0021 18 6 0.4442 -6.9400 4.1274 19 7 1.1432 -6.5618 5.1753 20 14 -1.3287 -7.4899 4.3363 21 1 -1.3673 -8.9543 4.5801 22 1 -1.9345 -6.7798 5.4912 23 1 -2.0938 -7.1731 3.1037 24 6 3.3291 -7.5982 1.8928 25 6 3.4796 -7.5626 3.4156 26 1 -0.3633 0.0005 1.0276 27 1 -0.3632 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 5.2209 -1.5557 -1.0111 30 1 5.6633 -0.7850 0.5311 31 1 4.7624 -2.3200 0.5296 32 1 2.1205 -2.7838 -2.1374 33 1 3.6082 -3.1871 -1.2474 34 1 2.2353 -4.3203 -1.2466 35 1 2.4475 -4.6270 3.5248 36 1 3.9344 -5.0321 2.6340 37 1 0.7380 -6.5680 6.0565 38 1 2.8205 -8.4582 1.4570 39 1 4.1405 -7.1800 1.2970 40 1 4.3899 -7.1210 3.8211 41 1 3.0701 -8.3990 3.9822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174747919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:16 Heat of formation + Delta-G solvation = -13.414357 kcal Electronic energy + Delta-G solvation = -24033.746463 eV Core-core repulsion = 20496.864239 eV Total energy + Delta-G solvation = -3536.882224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.90095 -40.02040 -37.07464 -35.84487 -35.16242 -33.87701 -32.00956 -31.76204 -28.69584 -27.82088 -27.01883 -25.41326 -24.68929 -22.41210 -21.21490 -20.59455 -19.49564 -19.28564 -17.67106 -17.22649 -16.69031 -16.60010 -15.72001 -15.44125 -14.73854 -14.56323 -14.04857 -13.59375 -13.49179 -13.41753 -13.17625 -13.11995 -12.86200 -12.79393 -12.36365 -12.35775 -12.00713 -11.83810 -11.65628 -11.28649 -11.03354 -10.94602 -10.85470 -10.58023 -10.33989 -10.02047 -9.89752 -9.84196 -9.57566 -9.11332 -8.87362 -8.51547 -8.25829 -6.11240 -4.16633 1.48558 2.14110 2.66592 3.07385 3.25570 3.33237 3.35335 3.36721 4.12973 4.35470 4.43997 4.65397 4.79140 5.05246 5.11576 5.18955 5.21046 5.33042 5.35565 5.41654 5.43091 5.49174 5.60684 5.73949 5.74919 5.87022 5.92399 5.94710 6.03695 6.17395 6.20600 6.28017 6.47376 6.60794 6.67950 6.98173 7.19165 7.31344 7.41879 7.82397 8.29324 8.29681 8.38599 8.85276 9.49622 10.98218 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.004357 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.783696 B = 6424.518369 C = 7163.247033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.032 3.968 3 N -0.372 5.372 4 O 0.092 5.908 5 C 0.005 3.995 6 C -0.078 4.078 7 C -0.193 4.193 8 C -0.004 4.004 9 H 0.118 0.882 10 C -0.142 4.142 11 C 0.456 3.544 12 O -0.514 6.514 13 O -0.332 6.332 14 C 0.116 3.884 15 C 0.037 3.963 16 C -0.490 4.490 17 H 0.064 0.936 18 C 0.069 3.931 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.204 4.204 25 C -0.146 4.146 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 8.187 -12.108 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 N -0.079 5.079 4 O 0.029 5.971 5 C -0.058 4.058 6 C -0.135 4.135 7 C -0.197 4.197 8 C -0.024 4.024 9 H 0.136 0.864 10 C -0.200 4.200 11 C 0.299 3.701 12 O -0.404 6.404 13 O -0.247 6.247 14 C 0.043 3.957 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.082 0.918 18 C -0.134 4.134 19 N -0.518 5.518 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.241 4.241 25 C -0.183 4.183 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.514 9.681 -11.631 15.536 hybrid contribution -0.974 -0.967 0.607 1.501 sum 2.540 8.714 -11.024 14.280 Atomic orbital electron populations 1.20207 0.85969 1.03704 1.03712 1.23360 0.98812 0.88300 1.02227 1.73805 0.89248 1.23791 1.21077 1.84768 1.21641 1.22531 1.68121 1.24124 0.98192 0.83381 1.00126 1.20490 0.90082 0.99578 1.03362 1.20284 0.92097 0.95570 1.11795 1.19091 1.02873 0.87619 0.92823 0.86388 1.21814 1.01484 1.01742 0.94922 1.23301 0.77932 0.82015 0.86867 1.90623 1.37864 1.65490 1.46399 1.86512 1.69998 1.22778 1.45457 1.22916 0.94199 0.95299 0.83253 1.18778 0.93487 0.85183 0.98865 1.20384 0.91478 1.48295 0.92623 0.91830 1.25014 0.97851 0.94588 0.95972 1.69994 1.36844 1.45900 0.99039 0.86594 0.84804 0.78829 0.77829 1.20528 1.21260 1.19713 1.23000 1.03271 1.04056 0.93814 1.22544 0.99639 1.03196 0.92959 0.89939 0.90494 0.89846 0.89623 0.89788 0.88524 0.91216 0.91965 0.89925 0.90592 0.94346 0.92870 0.90052 0.91545 0.91661 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.26 36.01 0.37 -0.46 16 2 C 0.03 0.45 7.33 -82.09 -0.60 -0.15 16 3 N -0.37 -5.69 12.07 33.43 0.40 -5.29 16 4 O 0.09 1.35 11.20 17.16 0.19 1.54 16 5 C 0.01 0.07 6.85 -35.31 -0.24 -0.17 16 6 C -0.08 -0.85 8.73 36.00 0.31 -0.53 16 7 C -0.19 -2.72 4.55 -104.42 -0.48 -3.20 16 8 C 0.00 -0.06 3.10 -92.93 -0.29 -0.35 16 9 H 0.12 1.46 7.34 -51.93 -0.38 1.07 16 10 C -0.14 -1.54 9.01 37.16 0.33 -1.21 16 11 C 0.46 8.21 6.43 36.01 0.23 8.44 16 12 O -0.51 -10.38 13.64 -18.75 -0.26 -10.64 16 13 O -0.33 -6.83 10.06 -39.25 -0.39 -7.22 16 14 C 0.12 2.65 5.29 37.16 0.20 2.85 16 15 C 0.04 0.89 1.60 -155.66 -0.25 0.65 16 16 C -0.49 -12.96 8.77 -34.44 -0.30 -13.26 16 17 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 18 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 19 N -0.88 -24.48 12.94 55.43 0.72 -23.76 16 20 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.20 -4.24 9.96 -26.70 -0.27 -4.51 16 25 C -0.15 -3.28 9.44 -26.70 -0.25 -3.53 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.73 7.55 -51.93 -0.39 0.34 16 29 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.23 5.53 -51.93 -0.29 0.95 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.63 6.51 -51.93 -0.34 0.29 16 34 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.08 1.95 8.13 -51.93 -0.42 1.53 16 36 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.08 8.14 -51.92 -0.42 1.65 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -30.58 348.02 -6.45 -37.03 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.01 Total: 1.15 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.33 Total: -13.68 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 1.12 Total: -29.05 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.46 Total: -16.32 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.58 -6.45 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.613 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds