Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30176 * 126.80352 * 2 1 4 4 O 1.20923 * 111.60495 * 179.97438 * 3 2 1 5 5 C 1.34048 * 111.56589 * 359.75948 * 4 3 2 6 6 C 1.50696 * 126.77374 * 180.28502 * 5 4 3 7 7 C 1.35449 * 106.44743 * 0.38296 * 5 4 3 8 8 C 1.50699 * 128.00683 * 179.91231 * 7 5 4 9 9 H 1.08998 * 109.46541 * 179.67595 * 8 7 5 10 10 C 1.52998 * 109.47052 * 299.67642 * 8 7 5 11 11 C 1.50699 * 109.47189 * 59.67728 * 8 7 5 12 12 O 1.20830 * 119.99759 * 359.97438 * 11 8 7 13 13 O 1.34228 * 119.99828 * 179.97438 * 11 8 7 14 14 C 1.45196 * 116.99816 * 179.97438 * 13 11 8 15 15 C 1.53001 * 109.47034 * 180.02562 * 14 13 11 16 16 C 1.50706 * 115.54621 * 294.88852 * 15 14 13 17 17 H 1.07997 * 119.99622 * 94.75372 * 16 15 14 18 18 C 1.37877 * 120.00171 * 275.02924 * 16 15 14 19 19 N 1.31515 * 119.99847 * 6.35967 * 18 16 15 20 20 Si 1.86799 * 119.99895 * 186.36477 * 18 16 15 21 21 H 1.48506 * 109.47157 * 89.99968 * 20 18 16 22 22 H 1.48498 * 109.47145 * 209.99884 * 20 18 16 23 23 H 1.48499 * 109.47267 * 330.00222 * 20 18 16 24 24 C 1.52991 * 117.50167 * 80.56490 * 15 14 13 25 25 C 1.52995 * 117.50024 * 149.22520 * 15 14 13 26 26 H 1.08994 * 109.47069 * 270.03037 * 1 2 3 27 27 H 1.08998 * 109.46558 * 30.02775 * 1 2 3 28 28 H 1.08998 * 109.46933 * 150.02470 * 1 2 3 29 29 H 1.08999 * 109.47527 * 270.11169 * 6 5 4 30 30 H 1.08998 * 109.47563 * 30.11886 * 6 5 4 31 31 H 1.09002 * 109.46873 * 150.11390 * 6 5 4 32 32 H 1.09009 * 109.46948 * 299.99883 * 10 8 7 33 33 H 1.08997 * 109.47139 * 59.99836 * 10 8 7 34 34 H 1.08996 * 109.47282 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47384 * 60.00378 * 14 13 11 36 36 H 1.09003 * 109.47194 * 300.00157 * 14 13 11 37 37 H 0.96995 * 119.99526 * 179.97438 * 19 18 16 38 38 H 1.09007 * 117.49464 * 215.00287 * 24 15 14 39 39 H 1.09000 * 117.50368 * 0.02562 * 24 15 14 40 40 H 1.09000 * 117.49974 * 359.97095 * 25 15 14 41 41 H 1.09007 * 117.50181 * 144.96609 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6069 0.0061 6 6 4.9022 -1.3696 0.0145 7 6 2.3540 -1.1321 0.0007 8 6 1.9591 -2.5865 0.0017 9 1 0.8721 -2.6677 0.0019 10 6 2.5213 -3.2685 -1.2471 11 6 2.5132 -3.2566 1.2326 12 8 3.1626 -2.6187 2.0271 13 8 2.2853 -4.5620 1.4461 14 6 2.8499 -5.1411 2.6520 15 6 2.4881 -6.6260 2.7224 16 6 1.0201 -6.9307 2.8747 17 1 0.4182 -7.1374 2.0021 18 6 0.4442 -6.9400 4.1274 19 7 1.1432 -6.5618 5.1753 20 14 -1.3287 -7.4899 4.3363 21 1 -1.3673 -8.9543 4.5801 22 1 -1.9345 -6.7798 5.4912 23 1 -2.0938 -7.1731 3.1037 24 6 3.3291 -7.5982 1.8928 25 6 3.4796 -7.5626 3.4156 26 1 -0.3633 0.0005 1.0276 27 1 -0.3632 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 5.2209 -1.5557 -1.0111 30 1 5.6633 -0.7850 0.5311 31 1 4.7624 -2.3200 0.5296 32 1 2.1205 -2.7838 -2.1374 33 1 3.6082 -3.1871 -1.2474 34 1 2.2353 -4.3203 -1.2466 35 1 2.4475 -4.6270 3.5248 36 1 3.9344 -5.0321 2.6340 37 1 0.7380 -6.5680 6.0565 38 1 2.8205 -8.4582 1.4570 39 1 4.1405 -7.1800 1.2970 40 1 4.3899 -7.1210 3.8211 41 1 3.0701 -8.3990 3.9822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174747919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = -29.011849 kcal Electronic energy + Delta-G solvation = -24034.422821 eV Core-core repulsion = 20496.864239 eV Total energy + Delta-G solvation = -3537.558582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.96891 -41.50709 -38.72240 -37.22364 -36.59024 -34.89594 -34.01478 -32.77279 -29.62785 -28.82748 -28.65331 -27.34173 -25.80192 -23.67826 -22.92250 -21.70411 -21.17360 -20.69597 -18.78280 -18.59368 -18.25803 -17.91307 -17.35273 -16.92395 -16.58603 -15.77819 -15.62656 -14.87596 -14.59746 -14.51246 -14.35094 -14.08256 -13.91407 -13.90034 -13.69720 -13.51855 -13.29932 -13.18550 -13.03219 -12.90420 -12.78329 -12.40630 -12.24876 -12.06592 -11.97219 -11.62038 -11.57351 -11.25316 -10.88196 -10.76128 -10.48104 -10.17511 -10.04611 -8.13404 -6.24055 0.42704 1.05165 1.24523 1.42258 1.44090 1.53191 1.88352 2.13890 2.42981 3.12690 3.16486 3.40303 3.49913 3.63065 3.73390 4.01685 4.09649 4.17019 4.30854 4.41260 4.42288 4.50283 4.58896 4.60274 4.62784 4.67861 4.70007 4.84228 4.86457 4.91840 4.95228 4.99747 5.08610 5.17582 5.21061 5.32213 5.48531 5.60991 5.72471 5.76335 6.37038 6.81813 6.84532 7.23545 7.45056 8.95471 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.004357 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.783696 B = 6424.518369 C = 7163.247033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.029 3.971 3 N -0.397 5.397 4 O 0.081 5.919 5 C 0.005 3.995 6 C -0.078 4.078 7 C -0.211 4.211 8 C 0.005 3.995 9 H 0.133 0.867 10 C -0.138 4.138 11 C 0.454 3.546 12 O -0.540 6.540 13 O -0.339 6.339 14 C 0.131 3.869 15 C 0.003 3.997 16 C -0.501 4.501 17 H 0.058 0.942 18 C 0.023 3.977 19 N -0.912 5.912 20 Si 0.949 3.051 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.173 4.173 25 C -0.151 4.151 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.260 0.740 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 7.934 -14.107 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 N -0.107 5.107 4 O 0.021 5.979 5 C -0.058 4.058 6 C -0.135 4.135 7 C -0.215 4.215 8 C -0.015 4.015 9 H 0.151 0.849 10 C -0.195 4.195 11 C 0.299 3.701 12 O -0.430 6.430 13 O -0.254 6.254 14 C 0.057 3.943 15 C 0.003 3.997 16 C -0.539 4.539 17 H 0.076 0.924 18 C -0.177 4.177 19 N -0.549 5.549 20 Si 0.775 3.225 21 H -0.199 1.199 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.210 4.210 25 C -0.188 4.188 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.332 9.424 -13.653 16.920 hybrid contribution -0.876 -0.843 1.212 1.717 sum 2.455 8.580 -12.441 15.311 Atomic orbital electron populations 1.20376 0.83911 1.05421 1.04102 1.23905 1.00254 0.87934 1.00954 1.73795 0.89632 1.24669 1.22600 1.84740 1.21609 1.23062 1.68509 1.24652 0.99251 0.83160 0.98774 1.20609 0.89165 0.98336 1.05367 1.20428 0.92446 0.95736 1.12891 1.19194 1.03541 0.87107 0.91616 0.84931 1.21848 1.01988 1.01481 0.94183 1.24223 0.77190 0.80949 0.87785 1.90612 1.39103 1.65648 1.47678 1.86513 1.70285 1.24384 1.44261 1.22471 0.94536 0.94433 0.82843 1.18881 0.92931 0.86252 1.01659 1.20659 0.93008 1.47763 0.92435 0.92400 1.25709 1.01430 0.94781 0.95820 1.70108 1.38359 1.47212 0.99260 0.85685 0.80591 0.78481 0.77729 1.19935 1.21498 1.18925 1.23012 1.02555 1.02635 0.92770 1.22479 0.99621 1.02328 0.94390 0.90070 0.89236 0.87754 0.86293 0.88730 0.90273 0.88719 0.91288 0.90096 0.94622 0.93144 0.93132 0.89571 0.88735 0.90523 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.26 71.24 0.73 -0.84 16 2 C 0.03 0.77 7.33 43.58 0.32 1.09 16 3 N -0.40 -11.90 12.07 -49.54 -0.60 -12.50 16 4 O 0.08 2.31 11.20 71.56 0.80 3.12 16 5 C 0.01 0.14 6.85 25.04 0.17 0.31 16 6 C -0.08 -1.56 8.73 71.23 0.62 -0.93 16 7 C -0.21 -5.63 4.55 -19.73 -0.09 -5.72 16 8 C 0.00 0.12 3.10 -12.29 -0.04 0.09 16 9 H 0.13 2.97 7.34 -2.39 -0.02 2.96 16 10 C -0.14 -2.59 9.01 71.98 0.65 -1.94 16 11 C 0.45 16.03 6.43 71.24 0.46 16.49 16 12 O -0.54 -21.85 13.64 21.95 0.30 -21.55 16 13 O -0.34 -13.74 10.06 -51.40 -0.52 -14.25 16 14 C 0.13 5.99 5.29 71.98 0.38 6.37 16 15 C 0.00 0.15 1.60 -52.93 -0.08 0.07 16 16 C -0.50 -26.51 8.77 25.60 0.22 -26.28 16 17 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 18 C 0.02 1.22 5.39 84.65 0.46 1.68 16 19 N -0.91 -51.58 12.94 21.45 0.28 -51.31 16 20 Si 0.95 42.41 29.54 68.60 2.03 44.44 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 C -0.17 -6.83 9.96 30.61 0.30 -6.53 16 25 C -0.15 -6.70 9.44 30.61 0.29 -6.41 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.55 7.55 -2.39 -0.02 1.53 16 29 H 0.12 1.56 8.03 -2.39 -0.02 1.54 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.92 5.53 -2.39 -0.01 1.90 16 32 H 0.09 1.33 8.14 -2.38 -0.02 1.32 16 33 H 0.07 1.20 6.51 -2.39 -0.02 1.18 16 34 H 0.08 1.58 8.11 -2.39 -0.02 1.56 16 35 H 0.04 1.89 8.13 -2.39 -0.02 1.87 16 36 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 37 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 38 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -66.49 348.02 7.71 -58.78 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.03 Total: 15.85 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 4.39 Total: -22.57 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.32 Total: -63.81 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: 0.58 Total: -32.69 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -66.49 7.71 -58.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.768 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds