Wall clock time and date at job start Tue Mar 31 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30182 * 126.79963 * 2 1 4 4 O 1.20923 * 111.60051 * 179.69206 * 3 2 1 5 5 C 1.34034 * 111.56996 * 0.45357 * 4 3 2 6 6 C 1.50698 * 126.78007 * 179.82903 * 5 4 3 7 7 C 1.35449 * 106.44782 * 359.56125 * 5 4 3 8 8 C 1.50700 * 128.01225 * 180.23930 * 7 5 4 9 9 H 1.08998 * 109.46712 * 6.16783 * 8 7 5 10 10 C 1.53001 * 109.47307 * 246.17151 * 8 7 5 11 11 C 1.50699 * 109.47258 * 126.16938 * 8 7 5 12 12 O 1.20827 * 119.99927 * 357.56748 * 11 8 7 13 13 O 1.34227 * 119.99929 * 177.57203 * 11 8 7 14 14 C 1.45199 * 116.99990 * 185.10688 * 13 11 8 15 15 C 1.52996 * 109.47460 * 184.71691 * 14 13 11 16 16 C 1.50697 * 115.55426 * 183.64736 * 15 14 13 17 17 H 1.07995 * 120.00410 * 144.43434 * 16 15 14 18 18 C 1.37881 * 119.99611 * 324.43389 * 16 15 14 19 19 N 1.31513 * 120.00020 * 167.71700 * 18 16 15 20 20 Si 1.86802 * 120.00204 * 347.71095 * 18 16 15 21 21 H 1.48496 * 109.46866 * 95.56238 * 20 18 16 22 22 H 1.48501 * 109.47020 * 215.56316 * 20 18 16 23 23 H 1.48504 * 109.46894 * 335.56388 * 20 18 16 24 24 C 1.53007 * 117.49571 * 37.97694 * 15 14 13 25 25 C 1.52999 * 117.49890 * 329.31710 * 15 14 13 26 26 H 1.09007 * 109.47038 * 275.40040 * 1 2 3 27 27 H 1.08995 * 109.47599 * 35.39849 * 1 2 3 28 28 H 1.08999 * 109.46970 * 155.40497 * 1 2 3 29 29 H 1.08999 * 109.47247 * 269.68784 * 6 5 4 30 30 H 1.08999 * 109.47156 * 29.68233 * 6 5 4 31 31 H 1.08997 * 109.47505 * 149.68173 * 6 5 4 32 32 H 1.09002 * 109.47165 * 63.53075 * 10 8 7 33 33 H 1.08996 * 109.47291 * 183.53357 * 10 8 7 34 34 H 1.09003 * 109.46921 * 303.53332 * 10 8 7 35 35 H 1.09003 * 109.47567 * 304.72173 * 14 13 11 36 36 H 1.09001 * 109.46934 * 64.71798 * 14 13 11 37 37 H 0.97002 * 120.00371 * 179.97438 * 19 18 16 38 38 H 1.08997 * 117.49924 * 0.02562 * 24 15 14 39 39 H 1.08997 * 117.49526 * 145.02257 * 24 15 14 40 40 H 1.09000 * 117.50176 * 214.97593 * 25 15 14 41 41 H 1.09001 * 117.50107 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0060 5 6 3.6025 -0.6067 0.0011 6 6 4.9021 -1.3694 0.0024 7 6 2.3540 -1.1320 0.0008 8 6 1.9591 -2.5863 0.0010 9 1 2.8499 -3.2046 0.1120 10 6 1.2635 -2.9262 -1.3187 11 6 1.0178 -2.8511 1.1477 12 8 0.7347 -1.9614 1.9147 13 8 0.4939 -4.0753 1.3170 14 6 -0.4917 -4.2303 2.3719 15 6 -0.8840 -5.7044 2.4907 16 6 -1.9681 -6.0099 3.4920 17 1 -2.6876 -6.7890 3.2880 18 6 -2.0413 -5.2946 4.6684 19 7 -3.1112 -5.3854 5.4277 20 14 -0.6206 -4.1967 5.1840 21 1 -0.8887 -2.8028 4.7477 22 1 -0.4772 -4.2340 6.6616 23 1 0.6334 -4.6806 4.5526 24 6 0.2208 -6.7466 2.3056 25 6 -0.8387 -6.5523 1.2180 26 1 -0.3633 0.0967 1.0232 27 1 -0.3634 0.8376 -0.5952 28 1 -0.3633 -0.9344 -0.4277 29 1 5.2162 -1.5540 -1.0249 30 1 5.6656 -0.7854 0.5163 31 1 4.7648 -2.3205 0.5168 32 1 1.9643 -2.7947 -2.1432 33 1 0.9222 -3.9610 -1.2935 34 1 0.4085 -2.2649 -1.4596 35 1 -0.0692 -3.8895 3.3171 36 1 -1.3749 -3.6374 2.1339 37 1 -3.1626 -4.8825 6.2556 38 1 1.2272 -6.3820 2.0997 39 1 0.1633 -7.6532 2.9078 40 1 -1.5926 -7.3313 1.1050 41 1 -0.5298 -6.0599 0.2959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174747927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:17 Heat of formation + Delta-G solvation = -15.896344 kcal Electronic energy + Delta-G solvation = -24349.826910 eV Core-core repulsion = 20812.837059 eV Total energy + Delta-G solvation = -3536.989851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.02060 -41.74453 -39.06870 -37.21490 -36.66472 -34.82590 -34.43805 -33.01704 -29.81614 -29.60915 -28.51053 -27.44016 -25.87369 -23.80662 -23.06339 -21.57571 -21.12227 -21.09764 -18.98867 -18.86303 -18.66148 -18.00306 -17.61519 -17.04010 -16.72233 -15.75222 -15.64632 -15.29049 -15.05959 -14.68468 -14.51070 -14.40247 -14.00831 -13.94981 -13.77914 -13.67307 -13.39979 -13.25444 -13.02290 -12.98482 -12.69069 -12.50504 -12.39215 -12.05644 -11.92831 -11.77943 -11.50690 -11.34021 -11.18036 -10.89728 -10.65559 -10.28778 -10.19448 -8.47678 -6.42601 0.41411 1.01132 1.08715 1.18830 1.23617 1.28259 1.71265 2.14470 2.16373 2.73713 3.09620 3.34062 3.43271 3.46012 3.74743 3.87108 3.94705 4.04535 4.05620 4.17661 4.21790 4.36103 4.46621 4.47368 4.60577 4.66379 4.73868 4.77136 4.79951 4.89213 4.90776 4.97768 5.01156 5.06331 5.20927 5.24969 5.31754 5.45874 5.57918 5.58401 6.18722 6.57425 6.65946 7.15924 7.26164 8.68664 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.004744 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.410341 B = 5901.290519 C = 6333.536380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.036 3.964 3 N -0.401 5.401 4 O 0.088 5.912 5 C -0.005 4.005 6 C -0.078 4.078 7 C -0.213 4.213 8 C 0.010 3.990 9 H 0.154 0.846 10 C -0.141 4.141 11 C 0.451 3.549 12 O -0.537 6.537 13 O -0.338 6.338 14 C 0.098 3.902 15 C -0.036 4.036 16 C -0.484 4.484 17 H 0.053 0.947 18 C 0.033 3.967 19 N -0.929 5.929 20 Si 0.928 3.072 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.246 1.246 24 C -0.183 4.183 25 C -0.152 4.152 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.270 0.730 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.343 5.880 -16.385 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 N -0.110 5.110 4 O 0.027 5.973 5 C -0.069 4.069 6 C -0.134 4.134 7 C -0.217 4.217 8 C -0.009 4.009 9 H 0.172 0.828 10 C -0.198 4.198 11 C 0.295 3.705 12 O -0.426 6.426 13 O -0.254 6.254 14 C 0.025 3.975 15 C -0.037 4.037 16 C -0.522 4.522 17 H 0.071 0.929 18 C -0.167 4.167 19 N -0.567 5.567 20 Si 0.757 3.243 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.171 1.171 24 C -0.220 4.220 25 C -0.189 4.189 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.934 7.491 -15.955 24.443 hybrid contribution -0.462 0.087 1.294 1.377 sum 16.472 7.578 -14.661 23.318 Atomic orbital electron populations 1.20229 0.86135 1.03978 1.02872 1.23570 0.99314 0.88814 1.00554 1.73800 0.89894 1.24617 1.22723 1.84754 1.21089 1.23427 1.68039 1.24992 0.99134 0.83261 0.99542 1.20708 0.87759 0.98581 1.06387 1.20472 0.92502 0.95831 1.12930 1.19300 0.98410 0.90951 0.92235 0.82814 1.21888 1.01185 1.03404 0.93336 1.24488 0.80014 0.79971 0.86041 1.90679 1.59821 1.46293 1.45824 1.86421 1.53468 1.32578 1.52971 1.22999 0.88676 0.98170 0.87618 1.19255 0.98362 0.86871 0.99239 1.20493 1.11731 1.19060 1.00894 0.92888 1.25597 0.96885 0.97549 0.96652 1.69997 1.28237 1.43540 1.14930 0.86258 0.82110 0.79098 0.76793 1.21138 1.21689 1.17066 1.23090 0.94395 1.01378 1.03168 1.22822 1.01339 1.02150 0.92578 0.91687 0.89487 0.89806 0.86213 0.88328 0.87672 0.88027 0.89423 0.92685 0.93598 0.92214 0.92019 0.88663 0.90135 0.90053 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 8.94 71.23 0.64 -1.40 16 2 C 0.04 1.03 6.72 43.58 0.29 1.32 16 3 N -0.40 -12.04 12.07 -49.55 -0.60 -12.63 16 4 O 0.09 2.23 11.20 71.69 0.80 3.04 16 5 C -0.01 -0.11 7.49 25.04 0.19 0.08 16 6 C -0.08 -0.63 10.21 71.24 0.73 0.09 16 7 C -0.21 -5.01 4.56 -19.74 -0.09 -5.10 16 8 C 0.01 0.21 3.09 -12.29 -0.04 0.17 16 9 H 0.15 2.04 7.09 -2.39 -0.02 2.02 16 10 C -0.14 -2.20 9.10 71.98 0.65 -1.55 16 11 C 0.45 14.31 6.77 71.24 0.48 14.80 16 12 O -0.54 -21.37 13.51 21.96 0.30 -21.07 16 13 O -0.34 -11.67 8.24 -51.39 -0.42 -12.10 16 14 C 0.10 4.30 4.29 71.98 0.31 4.60 16 15 C -0.04 -1.65 1.84 -52.93 -0.10 -1.75 16 16 C -0.48 -27.03 9.57 25.60 0.25 -26.78 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 18 C 0.03 1.91 5.42 84.66 0.46 2.37 16 19 N -0.93 -57.00 13.96 21.45 0.30 -56.70 16 20 Si 0.93 46.38 24.20 68.60 1.66 48.04 16 21 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.25 -11.51 6.42 99.48 0.64 -10.87 16 24 C -0.18 -7.00 9.66 30.62 0.30 -6.71 16 25 C -0.15 -5.59 9.63 30.62 0.29 -5.29 16 26 H 0.06 2.07 7.65 -2.38 -0.02 2.05 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 2.08 5.81 -2.39 -0.01 2.07 16 29 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.64 7.32 -2.39 -0.02 0.62 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.30 7.98 -2.39 -0.02 1.28 16 34 H 0.05 0.98 6.08 -2.39 -0.01 0.96 16 35 H 0.05 2.19 2.34 -2.39 -0.01 2.19 16 36 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.10 3.22 7.78 -2.39 -0.02 3.20 16 39 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.11 3.37 7.54 -2.39 -0.02 3.35 16 Total: -1.00 -73.59 334.05 7.38 -66.21 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.98 Total: 10.36 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.36 Total: -25.14 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -0.30 Total: -69.33 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: 0.68 Total: -30.13 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.66 Total: 48.04 kcal Total: -73.59 7.38 -66.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.315 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds