Wall clock time and date at job start Tue Mar 31 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47134 * 2 1 4 4 C 1.33639 * 126.03376 * 90.00407 * 3 2 1 5 5 N 1.31784 * 114.50076 * 179.97438 * 4 3 2 6 6 C 1.29026 * 117.12197 * 0.02562 * 5 4 3 7 7 C 1.50704 * 124.91367 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47120 * 90.02180 * 7 6 5 9 9 C 1.46905 * 110.99863 * 66.04461 * 8 7 6 10 10 C 1.46895 * 110.99856 * 189.99905 * 8 7 6 11 11 C 1.52994 * 109.47270 * 169.99896 * 10 8 7 12 12 H 1.09009 * 109.47154 * 54.99975 * 11 10 8 13 13 C 1.47200 * 109.47451 * 295.00037 * 11 10 8 14 14 N 8.42613 * 135.63287 * 11.55636 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99819 * 11 10 8 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 S 1.70977 * 110.16955 * 0.22318 * 6 5 4 25 25 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46799 * 299.99433 * 1 2 3 27 27 H 1.08993 * 109.46858 * 59.99542 * 1 2 3 28 28 H 1.09005 * 109.46799 * 240.00567 * 2 1 3 29 29 H 1.09000 * 109.46978 * 120.00811 * 2 1 3 30 30 H 1.08000 * 122.74838 * 0.02562 * 4 3 2 31 31 H 1.08992 * 109.46810 * 330.01935 * 7 6 5 32 32 H 1.08995 * 109.46713 * 210.02218 * 7 6 5 33 33 H 1.08997 * 109.46756 * 183.95173 * 9 8 7 34 34 H 1.09001 * 109.47143 * 303.95211 * 9 8 7 35 35 H 1.08997 * 109.46972 * 63.95331 * 9 8 7 36 36 H 1.08998 * 109.47324 * 49.99898 * 10 8 7 37 37 H 1.09002 * 109.47421 * 290.00075 * 10 8 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 39 39 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 40 40 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2945 2.1620 1.0807 5 7 2.7254 3.3792 0.8172 6 6 2.8409 3.7061 -0.4256 7 6 3.3149 5.0469 -0.9243 8 7 4.7746 5.0207 -1.0870 9 6 5.1687 4.0915 -2.1544 10 6 5.3002 6.3686 -1.3418 11 6 6.8276 6.3447 -1.2578 12 1 7.2173 5.5900 -1.9410 13 6 7.2385 6.0202 0.1179 14 7 7.5537 5.7726 1.1804 15 6 7.3812 7.7175 -1.6450 16 6 8.8867 7.6600 -1.6815 17 1 9.3976 6.7365 -1.4520 18 6 9.6117 8.7847 -2.0141 19 7 10.9253 8.7330 -2.0512 20 14 8.7281 10.3817 -2.4117 21 1 8.5466 11.1703 -1.1665 22 1 9.5350 11.1658 -3.3809 23 1 7.4004 10.0787 -3.0037 24 16 2.3717 2.4004 -1.4247 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 2.1647 1.7933 2.0875 31 1 3.0433 5.8190 -0.2045 32 1 2.8461 5.2640 -1.8841 33 1 6.2562 4.0386 -2.2067 34 1 4.7666 3.1012 -1.9408 35 1 4.7759 4.4454 -3.1075 36 1 4.9061 7.0592 -0.5962 37 1 4.9960 6.6953 -2.3362 38 1 7.0636 8.4577 -0.9105 39 1 7.0044 7.9970 -2.6288 40 1 11.4353 9.5243 -2.2848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175527366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:38 Heat of formation + Delta-G solvation = 64.012781 kcal Electronic energy + Delta-G solvation = -20313.549699 eV Core-core repulsion = 17255.070590 eV Total energy + Delta-G solvation = -3058.479109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94812 -38.22301 -35.84675 -34.60981 -33.60119 -31.96765 -30.10625 -27.79351 -27.59622 -25.66694 -23.94578 -22.87490 -21.57319 -21.44380 -19.30506 -18.23968 -16.93664 -16.82093 -15.92498 -15.70586 -15.21787 -14.69573 -14.56899 -14.29527 -14.19690 -13.86664 -13.34428 -13.10947 -12.90511 -12.75833 -12.47618 -12.31820 -12.03705 -12.00615 -11.81684 -11.72541 -11.61447 -11.35204 -11.23416 -11.15025 -10.77363 -10.23477 -9.99283 -9.83980 -9.65774 -9.36069 -9.31121 -8.98547 -8.61449 -8.37025 -6.10260 -4.10930 0.50156 1.13548 1.55726 2.67631 3.27136 3.34076 3.35051 3.71723 3.81859 3.87561 4.07553 4.38342 4.44675 4.62278 4.80339 4.84218 4.86467 5.04671 5.15461 5.24451 5.24543 5.29043 5.34502 5.41375 5.44519 5.59584 5.64118 5.66582 5.75464 5.81808 5.95614 6.00124 6.17661 6.29747 6.89449 6.93651 6.96207 7.11671 7.63648 7.64818 8.41203 8.59465 8.93568 9.49376 11.02857 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.036992 B = 0.002924 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.747640 B = 9574.565134 C = 9773.024377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.223 4.223 4 C 0.037 3.963 5 N -0.455 5.455 6 C 0.064 3.936 7 C 0.130 3.870 8 N -0.536 5.536 9 C 0.009 3.991 10 C 0.061 3.939 11 C 0.021 3.979 12 H 0.106 0.894 13 C 0.251 3.749 14 N -0.468 5.468 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.263 1.263 24 S 0.111 5.889 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.172 0.828 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.037 0.963 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.342 -14.454 -2.382 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.344 4.344 4 C -0.114 4.114 5 N -0.168 5.168 6 C -0.215 4.215 7 C -0.002 4.002 8 N -0.261 5.261 9 C -0.139 4.139 10 C -0.067 4.067 11 C -0.001 4.001 12 H 0.124 0.876 13 C -0.067 4.067 14 N -0.144 5.144 15 C -0.044 4.044 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.187 1.187 24 S 0.366 5.634 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.189 0.811 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.414 -14.620 -1.050 26.781 hybrid contribution -0.701 0.930 -0.421 1.238 sum -23.114 -13.690 -1.470 26.904 Atomic orbital electron populations 1.21802 0.94224 1.02085 1.02469 1.19986 0.96093 0.88924 1.03506 1.26010 1.10813 1.02493 0.95132 1.21717 1.00955 0.88725 1.00022 1.66224 1.14452 1.17374 1.18745 1.26855 1.02690 1.00853 0.91139 1.20628 0.88700 0.90523 1.00308 1.61896 1.08763 1.09783 1.45664 1.22663 1.02976 0.96449 0.91803 1.22311 0.94537 0.88538 1.01300 1.18979 0.92746 1.02288 0.86038 0.87608 1.28638 0.91840 0.91806 0.94395 1.80983 1.10018 1.10388 1.13042 1.19648 0.97826 0.89788 0.97132 1.21018 0.88735 0.98947 1.47801 0.90784 1.24997 0.94707 0.98802 0.94642 1.69906 1.05447 1.29797 1.48343 0.86813 0.80175 0.83864 0.78647 1.20228 1.21295 1.18732 1.83926 1.60436 1.07193 1.11815 0.91878 0.92255 0.92517 0.90608 0.89719 0.81084 0.87630 0.92316 0.89911 0.91710 0.94778 0.89800 0.92379 0.96012 0.94494 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.05 -0.30 6.47 -27.88 -0.18 -0.48 16 3 C -0.22 -2.11 5.85 -35.92 -0.21 -2.32 16 4 C 0.04 0.41 11.25 -19.18 -0.22 0.20 16 5 N -0.45 -6.26 10.54 -11.86 -0.13 -6.38 16 6 C 0.06 0.77 6.17 -13.45 -0.08 0.68 16 7 C 0.13 1.46 5.54 -4.97 -0.03 1.43 16 8 N -0.54 -7.08 4.45 -244.38 -1.09 -8.17 16 9 C 0.01 0.11 9.10 60.07 0.55 0.65 16 10 C 0.06 0.84 4.32 -3.83 -0.02 0.82 16 11 C 0.02 0.38 2.13 -93.41 -0.20 0.18 16 12 H 0.11 1.79 6.34 -51.92 -0.33 1.46 16 13 C 0.25 5.32 13.67 -20.77 -0.28 5.04 16 14 N -0.47 -11.03 18.53 42.14 0.78 -10.25 16 15 C 0.00 -0.11 3.49 -27.88 -0.10 -0.20 16 16 C -0.53 -14.17 9.15 -34.44 -0.32 -14.48 16 17 H 0.07 2.20 7.84 -52.49 -0.41 1.78 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 20 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 24 S 0.11 1.07 21.58 -107.50 -2.32 -1.25 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.11 1.19 7.93 -51.93 -0.41 0.77 16 32 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 34 H 0.06 0.73 5.81 -51.93 -0.30 0.43 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 37 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 39 H 0.04 0.73 7.19 -51.93 -0.37 0.36 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -33.26 348.25 -8.15 -41.40 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.93 Total: -3.12 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.81 Total: -7.05 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.34 Total: -51.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.32 Total: -1.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.26 -8.15 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175527366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.416 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds