Wall clock time and date at job start Tue Mar 31 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47134 * 2 1 4 4 C 1.33639 * 126.03376 * 90.00407 * 3 2 1 5 5 N 1.31784 * 114.50076 * 179.97438 * 4 3 2 6 6 C 1.29026 * 117.12197 * 0.02562 * 5 4 3 7 7 C 1.50704 * 124.91367 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47120 * 90.02180 * 7 6 5 9 9 C 1.46905 * 110.99863 * 66.04461 * 8 7 6 10 10 C 1.46895 * 110.99856 * 189.99905 * 8 7 6 11 11 C 1.52994 * 109.47270 * 169.99896 * 10 8 7 12 12 H 1.09009 * 109.47154 * 54.99975 * 11 10 8 13 13 C 1.47200 * 109.47451 * 295.00037 * 11 10 8 14 14 N 8.42613 * 135.63287 * 11.55636 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99819 * 11 10 8 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 S 1.70977 * 110.16955 * 0.22318 * 6 5 4 25 25 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46799 * 299.99433 * 1 2 3 27 27 H 1.08993 * 109.46858 * 59.99542 * 1 2 3 28 28 H 1.09005 * 109.46799 * 240.00567 * 2 1 3 29 29 H 1.09000 * 109.46978 * 120.00811 * 2 1 3 30 30 H 1.08000 * 122.74838 * 0.02562 * 4 3 2 31 31 H 1.08992 * 109.46810 * 330.01935 * 7 6 5 32 32 H 1.08995 * 109.46713 * 210.02218 * 7 6 5 33 33 H 1.08997 * 109.46756 * 183.95173 * 9 8 7 34 34 H 1.09001 * 109.47143 * 303.95211 * 9 8 7 35 35 H 1.08997 * 109.46972 * 63.95331 * 9 8 7 36 36 H 1.08998 * 109.47324 * 49.99898 * 10 8 7 37 37 H 1.09002 * 109.47421 * 290.00075 * 10 8 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 39 39 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 40 40 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2945 2.1620 1.0807 5 7 2.7254 3.3792 0.8172 6 6 2.8409 3.7061 -0.4256 7 6 3.3149 5.0469 -0.9243 8 7 4.7746 5.0207 -1.0870 9 6 5.1687 4.0915 -2.1544 10 6 5.3002 6.3686 -1.3418 11 6 6.8276 6.3447 -1.2578 12 1 7.2173 5.5900 -1.9410 13 6 7.2385 6.0202 0.1179 14 7 7.5537 5.7726 1.1804 15 6 7.3812 7.7175 -1.6450 16 6 8.8867 7.6600 -1.6815 17 1 9.3976 6.7365 -1.4520 18 6 9.6117 8.7847 -2.0141 19 7 10.9253 8.7330 -2.0512 20 14 8.7281 10.3817 -2.4117 21 1 8.5466 11.1703 -1.1665 22 1 9.5350 11.1658 -3.3809 23 1 7.4004 10.0787 -3.0037 24 16 2.3717 2.4004 -1.4247 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 2.1647 1.7933 2.0875 31 1 3.0433 5.8190 -0.2045 32 1 2.8461 5.2640 -1.8841 33 1 6.2562 4.0386 -2.2067 34 1 4.7666 3.1012 -1.9408 35 1 4.7759 4.4454 -3.1075 36 1 4.9061 7.0592 -0.5962 37 1 4.9960 6.6953 -2.3362 38 1 7.0636 8.4577 -0.9105 39 1 7.0044 7.9970 -2.6288 40 1 11.4353 9.5243 -2.2848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175527366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:37 Heat of formation + Delta-G solvation = 41.910548 kcal Electronic energy + Delta-G solvation = -20314.508124 eV Core-core repulsion = 17255.070590 eV Total energy + Delta-G solvation = -3059.437534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77212 -39.36511 -37.30139 -35.55448 -35.13918 -33.72276 -31.04701 -29.19357 -28.38602 -26.83493 -24.90606 -23.60839 -23.22272 -22.57384 -20.08213 -19.02457 -18.89249 -18.28310 -17.06405 -16.52061 -16.22351 -16.02669 -15.59136 -15.29569 -15.05592 -14.83216 -14.62213 -14.58112 -14.26369 -13.83957 -13.72838 -13.46705 -13.20765 -13.12351 -12.87292 -12.84484 -12.66922 -12.55125 -12.41521 -12.33399 -11.78402 -11.74047 -11.67649 -11.57295 -11.26236 -10.71949 -10.51768 -10.12047 -9.76238 -9.25554 -8.22860 -6.28615 -0.28278 0.38890 0.76994 1.45315 1.46733 1.57584 1.83832 2.06786 2.14571 2.43019 2.94301 3.13655 3.24501 3.35759 3.85415 3.99938 4.06012 4.12044 4.30657 4.37715 4.38746 4.43524 4.58406 4.60510 4.69113 4.72507 4.77869 4.79854 4.92979 5.02881 5.10075 5.12848 5.21946 5.27052 5.34451 5.46086 5.65021 5.99027 6.04380 6.28401 6.78955 6.85120 6.92355 7.35636 8.94184 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.036992 B = 0.002924 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.747640 B = 9574.565134 C = 9773.024377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C -0.216 4.216 4 C 0.010 3.990 5 N -0.494 5.494 6 C 0.039 3.961 7 C 0.131 3.869 8 N -0.561 5.561 9 C 0.009 3.991 10 C 0.072 3.928 11 C 0.025 3.975 12 H 0.115 0.885 13 C 0.262 3.738 14 N -0.520 5.520 15 C -0.002 4.002 16 C -0.530 4.530 17 H 0.026 0.974 18 C 0.001 3.999 19 N -0.956 5.956 20 Si 0.949 3.051 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.218 1.218 24 S 0.150 5.850 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.181 0.819 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.584 -14.379 -4.265 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.338 4.338 4 C -0.140 4.140 5 N -0.209 5.209 6 C -0.239 4.239 7 C 0.001 3.999 8 N -0.286 5.286 9 C -0.138 4.138 10 C -0.057 4.057 11 C 0.003 3.997 12 H 0.132 0.868 13 C -0.054 4.054 14 N -0.197 5.197 15 C -0.041 4.041 16 C -0.568 4.568 17 H 0.044 0.956 18 C -0.196 4.196 19 N -0.596 5.596 20 Si 0.772 3.228 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.140 1.140 24 S 0.405 5.595 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.198 0.802 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.692 -14.568 -2.939 29.681 hybrid contribution 0.347 0.735 0.189 0.834 sum -25.345 -13.833 -2.750 29.005 Atomic orbital electron populations 1.21782 0.93305 1.03090 1.02083 1.20142 0.96773 0.87212 1.04517 1.26429 1.09072 1.03501 0.94749 1.21942 1.02230 0.88648 1.01172 1.66212 1.15629 1.18831 1.20194 1.27025 1.03485 1.02031 0.91371 1.20671 0.87471 0.90203 1.01567 1.61746 1.10358 1.09684 1.46823 1.22659 1.02189 0.96378 0.92613 1.22188 0.90786 0.89208 1.03477 1.19140 0.96092 1.00651 0.83803 0.86785 1.29488 0.90400 0.90509 0.95007 1.80975 1.11859 1.11973 1.14928 1.19600 0.93748 0.91821 0.98944 1.21399 0.92069 0.97007 1.46352 0.95575 1.26077 0.95369 1.03381 0.94745 1.70097 1.07780 1.31054 1.50713 0.85684 0.80688 0.78093 0.78340 1.20433 1.21669 1.14010 1.83686 1.59312 1.05747 1.10796 0.90203 0.92718 0.92830 0.89619 0.88679 0.80162 0.88127 0.89397 0.91276 0.91769 0.92247 0.89392 0.88864 0.95504 0.91256 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.90 71.98 0.71 -0.60 16 2 C -0.05 -0.51 6.47 29.85 0.19 -0.32 16 3 C -0.22 -3.77 5.85 24.64 0.14 -3.62 16 4 C 0.01 0.22 11.25 83.66 0.94 1.17 16 5 N -0.49 -13.44 10.54 -191.44 -2.02 -15.46 16 6 C 0.04 0.88 6.17 88.52 0.55 1.43 16 7 C 0.13 2.64 5.54 85.56 0.47 3.12 16 8 N -0.56 -13.53 4.45 -927.07 -4.13 -17.66 16 9 C 0.01 0.20 9.10 127.69 1.16 1.36 16 10 C 0.07 1.72 4.32 86.30 0.37 2.09 16 11 C 0.03 0.84 2.13 -12.60 -0.03 0.82 16 12 H 0.11 3.70 6.34 -2.38 -0.02 3.68 16 13 C 0.26 11.18 13.67 89.45 1.22 12.40 16 14 N -0.52 -25.11 18.53 20.00 0.37 -24.74 16 15 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 16 C -0.53 -28.68 9.15 25.60 0.23 -28.44 16 17 H 0.03 1.61 7.84 -2.91 -0.02 1.59 16 18 C 0.00 0.04 5.47 84.66 0.46 0.50 16 19 N -0.96 -59.49 13.96 21.45 0.30 -59.19 16 20 Si 0.95 41.17 27.47 68.60 1.88 43.06 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.22 -7.85 6.54 99.48 0.65 -7.20 16 24 S 0.15 2.56 21.58 -56.49 -1.22 1.35 16 25 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.10 2.08 7.93 -2.39 -0.02 2.06 16 32 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 33 H 0.07 1.60 6.37 -2.39 -0.02 1.59 16 34 H 0.06 1.32 5.81 -2.39 -0.01 1.30 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 2.06 7.93 -2.39 -0.02 2.04 16 37 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 38 H 0.03 1.06 7.57 -2.38 -0.02 1.04 16 39 H 0.07 2.38 7.19 -2.39 -0.02 2.37 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.61 348.25 2.71 -72.90 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.97 Total: 9.82 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 6.54 Total: -10.08 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -5.48 Total: -117.05 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.06 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.22 Total: 1.35 kcal Total: -75.61 2.71 -72.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175527366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.811 kcal (2) G-P(sol) polarization free energy of solvation -75.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds