Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47300 * 2 1 4 4 C 1.33644 * 126.03593 * 90.00592 * 3 2 1 5 5 N 1.31779 * 114.50024 * 180.02562 * 4 3 2 6 6 C 1.29031 * 117.12645 * 359.97438 * 5 4 3 7 7 C 1.50695 * 124.91790 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47121 * 90.02470 * 7 6 5 9 9 C 1.46902 * 111.00037 * 66.04805 * 8 7 6 10 10 C 1.46896 * 110.99771 * 190.00075 * 8 7 6 11 11 C 1.53006 * 109.47366 * 75.60365 * 10 8 7 12 12 H 1.09000 * 109.46748 * 304.92010 * 11 10 8 13 13 C 1.47200 * 109.46777 * 64.91798 * 11 10 8 14 14 N 8.32737 * 130.84783 * 15.11312 * 2 1 3 15 15 C 1.52997 * 109.47145 * 184.91791 * 11 10 8 16 16 C 1.50700 * 109.47090 * 175.00109 * 15 11 10 17 17 H 1.08001 * 120.00000 * 0.02562 * 16 15 11 18 18 C 1.37878 * 120.00297 * 180.02562 * 16 15 11 19 19 N 1.31515 * 119.99883 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47460 * 60.00219 * 20 18 16 22 22 H 1.48505 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47353 * 299.99524 * 20 18 16 24 24 S 1.70980 * 110.16461 * 0.23131 * 6 5 4 25 25 H 1.09002 * 109.47087 * 299.99715 * 1 2 3 26 26 H 1.09002 * 109.47266 * 59.99724 * 1 2 3 27 27 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47087 * 240.00285 * 2 1 3 29 29 H 1.09002 * 109.47217 * 120.00830 * 2 1 3 30 30 H 1.07999 * 122.74631 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.46929 * 330.02196 * 7 6 5 32 32 H 1.08998 * 109.46864 * 210.02731 * 7 6 5 33 33 H 1.09000 * 109.46817 * 187.71260 * 9 8 7 34 34 H 1.08999 * 109.46659 * 307.71636 * 9 8 7 35 35 H 1.08998 * 109.47048 * 67.71195 * 9 8 7 36 36 H 1.08999 * 109.47202 * 315.60383 * 10 8 7 37 37 H 1.09004 * 109.47213 * 195.60374 * 10 8 7 38 38 H 1.09000 * 109.47207 * 295.00065 * 15 11 10 39 39 H 1.09002 * 109.47090 * 54.99904 * 15 11 10 40 40 H 0.96998 * 119.99815 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1620 1.0807 5 7 2.7244 3.3795 0.8172 6 6 2.8400 3.7065 -0.4257 7 6 3.3129 5.0475 -0.9244 8 7 4.7727 5.0226 -1.0868 9 6 5.1679 4.0936 -2.1540 10 6 5.2971 6.3709 -1.3415 11 6 5.3029 7.1708 -0.0373 12 1 4.3019 7.1694 0.3942 13 6 6.2467 6.5567 0.9108 14 7 6.9765 6.0814 1.6424 15 6 5.7325 8.6109 -0.3241 16 6 5.6205 9.4291 0.9365 17 1 5.2775 8.9680 1.8509 18 6 5.9558 10.7664 0.9225 19 7 6.3739 11.3279 -0.1909 20 14 5.8161 11.7807 2.4849 21 1 6.6958 11.2013 3.5315 22 1 6.2333 13.1785 2.2065 23 1 4.4088 11.7688 2.9587 24 16 2.3720 2.4002 -1.4247 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 2.1647 1.7933 2.0875 31 1 3.0405 5.8195 -0.2047 32 1 2.8442 5.2641 -1.8843 33 1 6.2530 3.9903 -2.1623 34 1 4.7115 3.1200 -1.9755 35 1 4.8324 4.4814 -3.1158 36 1 4.6655 6.8741 -2.0736 37 1 6.3139 6.2983 -1.7277 38 1 6.7655 8.6194 -0.6721 39 1 5.0868 9.0366 -1.0922 40 1 6.6094 12.2688 -0.2008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175527390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = 39.395174 kcal Electronic energy + Delta-G solvation = -20412.409714 eV Core-core repulsion = 17352.863106 eV Total energy + Delta-G solvation = -3059.546609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77490 -39.29086 -37.25410 -35.53040 -35.16176 -33.52403 -31.04046 -29.01399 -28.34347 -26.41859 -25.10389 -23.68214 -23.50387 -22.60586 -20.12574 -19.03375 -18.54554 -18.20852 -16.82104 -16.52063 -16.50471 -15.98221 -15.66000 -15.28776 -14.89906 -14.82105 -14.60492 -14.34862 -14.20746 -13.77856 -13.67170 -13.39225 -13.16844 -13.00395 -12.93959 -12.80951 -12.68608 -12.56928 -12.45560 -12.38153 -12.31366 -11.80613 -11.72407 -11.37416 -11.14187 -10.53727 -10.49242 -10.11196 -9.75170 -9.27215 -8.18497 -6.25925 -0.27454 0.39066 0.76996 1.40805 1.42650 1.49687 1.85827 2.07958 2.16157 2.42290 2.94976 3.16922 3.26110 3.37589 3.86522 4.02691 4.09260 4.12955 4.30885 4.36956 4.39882 4.42792 4.58970 4.66267 4.71207 4.77837 4.79273 4.87537 4.97144 5.01426 5.03469 5.13749 5.23155 5.35591 5.48453 5.64021 5.80266 5.96028 6.04442 6.23703 6.84513 6.87585 6.95663 7.42154 8.92074 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.025998 B = 0.003151 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.754035 B = 8883.521548 C = 9250.389206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.215 4.215 4 C 0.011 3.989 5 N -0.494 5.494 6 C 0.040 3.960 7 C 0.123 3.877 8 N -0.558 5.558 9 C 0.018 3.982 10 C 0.075 3.925 11 C 0.021 3.979 12 H 0.110 0.890 13 C 0.268 3.732 14 N -0.520 5.520 15 C 0.040 3.960 16 C -0.540 4.540 17 H 0.049 0.951 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.945 3.055 21 H -0.283 1.283 22 H -0.280 1.280 23 H -0.264 1.264 24 S 0.152 5.848 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.181 0.819 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.004 0.996 39 H 0.041 0.959 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 -21.824 -8.293 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.337 4.337 4 C -0.139 4.139 5 N -0.209 5.209 6 C -0.238 4.238 7 C -0.008 4.008 8 N -0.283 5.283 9 C -0.130 4.130 10 C -0.053 4.053 11 C -0.001 4.001 12 H 0.128 0.872 13 C -0.048 4.048 14 N -0.198 5.198 15 C 0.001 3.999 16 C -0.578 4.578 17 H 0.067 0.933 18 C -0.185 4.185 19 N -0.561 5.561 20 Si 0.771 3.229 21 H -0.209 1.209 22 H -0.205 1.205 23 H -0.189 1.189 24 S 0.407 5.593 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.198 0.802 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.033 -22.276 -7.509 26.408 hybrid contribution -0.335 1.125 1.108 1.614 sum -12.367 -21.151 -6.401 25.324 Atomic orbital electron populations 1.21789 0.93418 1.03094 1.02050 1.20138 0.96672 0.87113 1.04590 1.26443 1.09031 1.03519 0.94668 1.21943 1.02227 0.88567 1.01205 1.66214 1.15609 1.18845 1.20229 1.26946 1.03548 1.01896 0.91411 1.20787 0.87993 0.90429 1.01581 1.61773 1.10191 1.09504 1.46865 1.22564 1.01956 0.96134 0.92329 1.22116 1.01910 0.86889 0.94419 1.19229 0.95054 0.94708 0.91121 0.87188 1.29468 0.92758 0.89967 0.92644 1.81018 1.12895 1.13586 1.12293 1.18985 0.96543 0.87848 0.96499 1.21516 1.44469 0.95067 0.96781 0.93262 1.25653 0.94919 0.99148 0.98766 1.70008 1.45544 1.12765 1.27775 0.85810 0.78983 0.77905 0.80249 1.20937 1.20490 1.18855 1.83599 1.59416 1.05543 1.10765 0.92840 0.92864 0.90124 0.89452 0.88611 0.80203 0.88408 0.89529 0.91208 0.91492 0.92741 0.89600 0.89698 0.97794 0.94126 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.05 -0.51 6.47 29.85 0.19 -0.32 16 3 C -0.22 -3.93 5.85 24.64 0.14 -3.78 16 4 C 0.01 0.25 11.25 83.66 0.94 1.19 16 5 N -0.49 -14.51 10.54 -191.44 -2.02 -16.52 16 6 C 0.04 0.99 6.18 88.52 0.55 1.54 16 7 C 0.12 2.90 5.37 85.56 0.46 3.36 16 8 N -0.56 -14.60 4.38 -927.05 -4.06 -18.66 16 9 C 0.02 0.37 9.34 127.69 1.19 1.56 16 10 C 0.08 2.08 4.36 86.31 0.38 2.46 16 11 C 0.02 0.77 2.26 -12.60 -0.03 0.74 16 12 H 0.11 3.89 6.65 -2.39 -0.02 3.88 16 13 C 0.27 11.74 13.67 89.43 1.22 12.96 16 14 N -0.52 -25.09 18.55 20.02 0.37 -24.72 16 15 C 0.04 1.85 4.42 29.85 0.13 1.98 16 16 C -0.54 -29.11 8.60 25.60 0.22 -28.89 16 17 H 0.05 2.67 7.59 -2.91 -0.02 2.65 16 18 C 0.01 0.79 5.46 84.65 0.46 1.25 16 19 N -0.92 -52.89 13.29 21.45 0.28 -52.60 16 20 Si 0.94 44.12 29.54 68.60 2.03 46.14 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 24 S 0.15 2.75 21.48 -56.49 -1.21 1.54 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.10 2.56 6.56 -2.39 -0.02 2.54 16 32 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 33 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.07 1.33 5.60 -2.39 -0.01 1.32 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.96 8.00 -2.39 -0.02 1.94 16 37 H 0.08 2.35 7.93 -2.39 -0.02 2.33 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.28 352.33 2.99 -66.29 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.03 Total: 5.21 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 6.58 Total: -6.67 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -5.42 Total: -112.51 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.21 Total: 1.54 kcal Total: -69.28 2.99 -66.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175527390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.684 kcal (2) G-P(sol) polarization free energy of solvation -69.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds