Wall clock time and date at job start Tue Mar 31 2020 06:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00223 * 2 1 4 4 O 1.20828 * 119.99807 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00520 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47650 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99694 * 270.00316 * 6 5 3 8 8 H 1.08006 * 119.99879 * 191.13538 * 7 6 5 9 9 C 1.38807 * 120.00380 * 11.12888 * 7 6 5 10 10 N 1.31615 * 119.99849 * 25.64876 * 9 7 6 11 11 Si 1.86804 * 120.00222 * 205.64178 * 9 7 6 12 12 H 1.48494 * 109.46823 * 90.00240 * 11 9 7 13 13 H 1.48504 * 109.47067 * 210.00144 * 11 9 7 14 14 H 1.48496 * 109.46868 * 330.00263 * 11 9 7 15 15 C 1.46503 * 120.00282 * 89.99426 * 6 5 3 16 16 C 1.52999 * 109.46682 * 84.55880 * 15 6 5 17 17 O 1.42898 * 109.47286 * 65.00108 * 16 15 6 18 18 C 1.35895 * 117.00033 * 179.97438 * 17 16 15 19 19 C 1.38757 * 120.05841 * 359.97438 * 18 17 16 20 20 C 1.38124 * 119.94398 * 179.97438 * 19 18 17 21 21 C 1.38282 * 120.05895 * 0.02906 * 20 19 18 22 22 C 1.38242 * 120.10970 * 359.97438 * 21 20 19 23 23 C 1.38164 * 120.05723 * 359.68572 * 22 21 20 24 24 C 1.50705 * 120.03257 * 180.29351 * 23 22 21 25 25 H 1.08994 * 109.47195 * 300.00481 * 1 2 3 26 26 H 1.08998 * 109.46801 * 60.00131 * 1 2 3 27 27 H 1.08999 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47239 * 59.99486 * 5 3 2 29 29 H 1.09010 * 109.46542 * 299.99823 * 5 3 2 30 30 H 0.97006 * 120.00605 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46887 * 324.56496 * 15 6 5 32 32 H 1.08995 * 109.47438 * 204.55738 * 15 6 5 33 33 H 1.09003 * 109.47204 * 305.00220 * 16 15 6 34 34 H 1.09002 * 109.46897 * 185.00186 * 16 15 6 35 35 H 1.08002 * 120.02511 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.96906 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.94526 * 179.97438 * 21 20 19 38 38 H 1.08003 * 119.97526 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47337 * 270.32303 * 24 23 22 40 40 H 1.09004 * 109.46660 * 30.31842 * 24 23 22 41 41 H 1.08997 * 109.47148 * 150.31658 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1763 3.3355 -1.1864 8 1 4.6515 4.3053 -1.1957 9 6 3.7630 2.7538 -2.3770 10 7 2.7810 1.8775 -2.3752 11 14 4.6005 3.2147 -3.9819 12 1 5.7466 2.3015 -4.2222 13 1 3.6295 3.0949 -5.0992 14 1 5.0911 4.6139 -3.9002 15 6 4.1888 3.3831 1.2682 16 6 5.6044 3.1071 1.7791 17 8 6.5558 3.6712 0.8743 18 6 7.8697 3.5145 1.1838 19 6 8.2359 2.8323 2.3353 20 6 9.5721 2.6740 2.6473 21 6 10.5445 3.1952 1.8138 22 6 10.1823 3.8754 0.6661 23 6 8.8473 4.0304 0.3457 24 6 8.4532 4.7663 -0.9090 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.9565 0.7806 -0.8891 29 1 3.9557 0.7810 0.8909 30 1 2.4918 1.4712 -3.2072 31 1 3.4630 3.0314 2.0014 32 1 4.0604 4.4545 1.1147 33 1 5.7624 2.0308 1.8480 34 1 5.7291 3.5565 2.7643 35 1 7.4768 2.4254 2.9869 36 1 9.8576 2.1427 3.5432 37 1 11.5887 3.0707 2.0598 38 1 10.9436 4.2820 0.0168 39 1 8.3402 5.8275 -0.6876 40 1 9.2261 4.6333 -1.6661 41 1 7.5083 4.3701 -1.2810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177837406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:57 Heat of formation + Delta-G solvation = -69.879489 kcal Electronic energy + Delta-G solvation = -24066.920169 eV Core-core repulsion = 20527.589433 eV Total energy + Delta-G solvation = -3539.330736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.85308 -38.91185 -37.27662 -35.82859 -34.49711 -32.59981 -31.68702 -29.88487 -28.92245 -27.62613 -26.43700 -25.95699 -24.03496 -22.13860 -21.26945 -20.65927 -19.58002 -17.70157 -16.93225 -16.28679 -15.74587 -15.59181 -15.39323 -15.15143 -15.02235 -14.54769 -14.26196 -13.69505 -13.38720 -13.20630 -12.95585 -12.82590 -12.44589 -12.18759 -11.98371 -11.82490 -11.71930 -11.34956 -11.11715 -11.09733 -10.98486 -10.80876 -10.58047 -10.41505 -10.30961 -10.07122 -9.84712 -9.58137 -9.09709 -8.63394 -8.49934 -7.76099 -7.10336 -5.89351 -3.15941 1.51355 1.69945 3.40306 3.47727 3.49027 3.72669 3.88114 3.97402 4.06259 4.50994 4.99359 5.02701 5.16831 5.21585 5.34713 5.46893 5.52598 5.65767 5.73720 5.80667 5.84343 5.86602 5.87556 5.93311 6.03657 6.11034 6.11603 6.24099 6.25626 6.52781 6.54535 6.59670 6.67170 6.73783 6.79330 7.01358 7.06964 7.73471 7.83840 7.90886 8.17626 9.05579 9.41730 9.73568 10.13853 11.22669 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.005091 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.137466 B = 5498.235988 C = 6740.900297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.467 3.533 4 O -0.505 6.505 5 C 0.189 3.811 6 N -0.561 5.561 7 C -0.237 4.237 8 H 0.084 0.916 9 C -0.002 4.002 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.287 1.287 13 H -0.295 1.295 14 H -0.278 1.278 15 C 0.146 3.854 16 C 0.041 3.959 17 O -0.281 6.281 18 C 0.142 3.858 19 C -0.213 4.213 20 C -0.089 4.089 21 C -0.169 4.169 22 C -0.087 4.087 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.256 0.744 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.914 -0.912 8.907 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.302 6.302 3 C 0.306 3.694 4 O -0.390 6.390 5 C 0.060 3.940 6 N -0.280 5.280 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.199 4.199 10 N -0.550 5.550 11 Si 0.735 3.265 12 H -0.214 1.214 13 H -0.222 1.222 14 H -0.204 1.204 15 C 0.019 3.981 16 C -0.037 4.037 17 O -0.193 6.193 18 C 0.095 3.905 19 C -0.232 4.232 20 C -0.108 4.108 21 C -0.188 4.188 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.165 4.165 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.495 -0.537 8.578 12.084 hybrid contribution -0.033 0.013 -0.739 0.739 sum 8.462 -0.524 7.839 11.547 Atomic orbital electron populations 1.22832 0.79941 1.01181 1.01209 1.86539 1.20897 1.36899 1.85868 1.25454 0.93396 0.80202 0.70306 1.90458 1.66587 1.36439 1.45509 1.20332 0.85699 0.86756 1.01241 1.44021 1.75035 1.07194 1.01763 1.19286 1.31502 1.03215 0.82556 0.89800 1.24729 0.97103 1.00066 0.98039 1.69805 1.25213 1.33525 1.26459 0.86224 0.79070 0.78207 0.83038 1.21411 1.22177 1.20362 1.20872 0.90084 0.98192 0.88978 1.23830 0.90996 0.97496 0.91361 1.86320 1.11327 1.72712 1.48909 1.19074 0.84991 0.93810 0.92619 1.21255 0.97360 1.05660 0.98934 1.20841 0.92371 0.98610 0.98937 1.20899 0.98972 1.02454 0.96452 1.20830 0.94556 0.98281 0.96844 1.19324 0.91573 1.03128 0.97984 1.20645 1.02937 0.99288 0.93643 0.93751 0.92848 0.90256 0.87350 0.93154 0.93355 0.92118 0.91494 0.92733 0.93297 0.85723 0.86481 0.86584 0.86000 0.91799 0.92295 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.38 10.57 -39.25 -0.41 -8.80 16 3 C 0.47 11.36 5.95 36.00 0.21 11.57 16 4 O -0.51 -13.89 15.70 -18.75 -0.29 -14.18 16 5 C 0.19 4.35 5.57 -5.20 -0.03 4.32 16 6 N -0.56 -13.29 1.98 -174.61 -0.34 -13.63 16 7 C -0.24 -6.27 9.43 -15.06 -0.14 -6.41 16 8 H 0.08 2.23 7.95 -52.48 -0.42 1.81 16 9 C 0.00 -0.06 4.84 -17.43 -0.08 -0.15 16 10 N -0.90 -25.67 8.92 55.49 0.49 -25.17 16 11 Si 0.90 21.81 29.62 -169.99 -5.04 16.77 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.15 2.84 6.07 -4.04 -0.02 2.81 16 16 C 0.04 0.68 5.08 37.16 0.19 0.87 16 17 O -0.28 -5.23 8.92 -19.41 -0.17 -5.40 16 18 C 0.14 2.38 6.66 -39.21 -0.26 2.11 16 19 C -0.21 -3.07 9.04 -39.43 -0.36 -3.43 16 20 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 21 C -0.17 -2.08 10.04 -39.56 -0.40 -2.48 16 22 C -0.09 -1.15 9.70 -39.61 -0.38 -1.54 16 23 C -0.12 -1.87 5.89 -104.47 -0.62 -2.49 16 24 C -0.11 -1.66 9.79 36.01 0.35 -1.30 16 25 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.11 2.71 6.51 -51.93 -0.34 2.38 16 29 H 0.05 0.97 8.06 -51.92 -0.42 0.55 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.07 1.34 8.00 -51.93 -0.42 0.93 16 33 H 0.05 0.87 7.65 -51.93 -0.40 0.48 16 34 H 0.05 0.67 7.66 -51.93 -0.40 0.28 16 35 H 0.12 1.61 6.30 -52.49 -0.33 1.28 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 41 H 0.08 1.51 7.53 -51.93 -0.39 1.11 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -31.95 346.57 -7.46 -39.41 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.04 Total: 1.57 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.87 Total: 4.21 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.15 Total: -38.80 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.88 Total: -28.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.04 Total: 16.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.95 -7.46 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177837406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.469 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds