Wall clock time and date at job start Tue Mar 31 2020 07:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 C 1.52997 * 109.46972 * 120.00614 * 2 1 3 5 5 H 1.09002 * 109.47340 * 299.99068 * 4 2 1 6 6 O 1.42898 * 109.47706 * 59.99871 * 4 2 1 7 7 C 1.53005 * 109.46972 * 179.97438 * 4 2 1 8 8 N 1.46504 * 109.47239 * 179.97438 * 7 4 2 9 9 C 1.34777 * 119.99800 * 179.97438 * 8 7 4 10 10 O 1.21585 * 119.99914 * 359.97438 * 9 8 7 11 11 C 1.47534 * 119.99436 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.19959 * 359.97438 * 11 9 8 13 13 C 1.37833 * 119.91839 * 179.97438 * 12 11 9 14 14 C 1.38567 * 120.32258 * 0.02562 * 13 12 11 15 15 C 1.38029 * 120.40619 * 0.02562 * 14 13 12 16 16 C 1.38833 * 120.06664 * 359.95361 * 15 14 13 17 17 O 1.35524 * 120.15909 * 180.02562 * 16 15 14 18 18 C 1.34815 * 116.99762 * 354.40543 * 17 16 15 19 19 H 1.08001 * 120.00398 * 5.06019 * 18 17 16 20 20 C 1.38698 * 119.99875 * 185.06601 * 18 17 16 21 21 N 1.31529 * 119.99965 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00327 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46816 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47408 * 119.99516 * 22 20 18 25 25 H 1.48503 * 109.46953 * 239.99842 * 22 20 18 26 26 H 1.09004 * 109.46832 * 299.99789 * 1 2 3 27 27 H 1.08995 * 109.46916 * 59.99585 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46832 * 240.00211 * 2 1 3 30 30 H 1.09000 * 109.47200 * 300.00509 * 3 2 1 31 31 H 1.09004 * 109.46963 * 60.00291 * 3 2 1 32 32 H 1.09000 * 109.46835 * 179.97438 * 3 2 1 33 33 H 0.96699 * 114.00346 * 59.99407 * 6 4 2 34 34 H 1.08992 * 109.47361 * 59.99330 * 7 4 2 35 35 H 1.09004 * 109.46832 * 299.99597 * 7 4 2 36 36 H 0.96997 * 119.99877 * 359.97438 * 8 7 4 37 37 H 1.07999 * 120.04029 * 0.02562 * 12 11 9 38 38 H 1.07997 * 119.83568 * 180.29263 * 13 12 11 39 39 H 1.08002 * 119.80042 * 179.97438 * 14 13 12 40 40 H 1.07993 * 119.96591 * 179.97438 * 15 14 13 41 41 H 0.96992 * 120.00366 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6768 -0.2076 2.1392 6 8 1.5637 -2.0686 1.2491 7 6 3.5701 -0.7219 1.2488 8 7 4.0584 -1.4121 2.4452 9 6 5.3835 -1.5361 2.6580 10 8 6.1736 -1.0755 1.8567 11 6 5.8752 -2.2307 3.8631 12 6 4.9714 -2.7608 4.7864 13 6 5.4371 -3.4091 5.9101 14 6 6.7993 -3.5375 6.1295 15 6 7.7044 -3.0177 5.2263 16 6 7.2535 -2.3620 4.0888 17 8 8.1406 -1.8514 3.2005 18 6 9.4451 -1.9107 3.5355 19 1 9.7486 -2.4230 4.4365 20 6 10.3975 -1.3135 2.7230 21 7 10.0280 -0.6899 1.6255 22 14 12.2050 -1.3950 3.1874 23 1 12.3559 -2.1473 4.4588 24 1 12.9620 -2.0837 2.1114 25 1 12.7338 -0.0183 3.3616 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.8489 -2.5867 0.4841 34 1 3.9338 0.3055 1.2486 35 1 3.9330 -1.2360 0.3588 36 1 3.4281 -1.7799 3.0842 37 1 3.9087 -2.6637 4.6197 38 1 4.7370 -3.8226 6.6208 39 1 7.1549 -4.0467 7.0130 40 1 8.7645 -3.1215 5.4046 41 1 10.6940 -0.2727 1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178649190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:40 Heat of formation + Delta-G solvation = -97.608395 kcal Electronic energy + Delta-G solvation = -23396.335127 eV Core-core repulsion = 19855.801975 eV Total energy + Delta-G solvation = -3540.533151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.67035 -38.79569 -37.60698 -36.30309 -34.35814 -33.72135 -32.32147 -30.70537 -28.90782 -28.30921 -27.00704 -25.36931 -23.76410 -22.43089 -21.26202 -20.82236 -19.69199 -18.04727 -17.66872 -16.74713 -16.20122 -15.88887 -15.12412 -14.71861 -14.58854 -14.50113 -14.15680 -13.99491 -13.85483 -13.69595 -13.26998 -13.03043 -12.56282 -12.45193 -12.36231 -12.22868 -11.99696 -11.70567 -11.48895 -11.28726 -11.13380 -11.10175 -10.89911 -10.77463 -10.69512 -10.43573 -10.02358 -9.54983 -8.87274 -8.81971 -8.51938 -8.23921 -7.28774 -6.43305 -4.03184 1.74390 2.34319 3.12289 3.13253 3.18907 3.63212 3.77798 3.94487 4.27450 4.52505 4.66791 4.67690 4.79512 5.08578 5.13759 5.19258 5.22742 5.40537 5.44666 5.49304 5.57458 5.65612 5.69888 5.75390 5.84019 5.87282 5.96052 6.09761 6.13877 6.15031 6.18255 6.59125 6.71559 6.93790 6.97768 7.08953 7.26085 7.31371 7.48230 7.71861 7.93798 8.17759 8.96608 9.13232 9.69572 10.70743 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.004035 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.511961 B = 6938.153302 C = 8412.867913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.154 4.154 4 C 0.101 3.899 5 H 0.103 0.897 6 O -0.558 6.558 7 C 0.091 3.909 8 N -0.739 5.739 9 C 0.553 3.447 10 O -0.504 6.504 11 C -0.227 4.227 12 C -0.037 4.037 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.239 4.239 16 C 0.190 3.810 17 O -0.125 6.125 18 C -0.403 4.403 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.834 5.834 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.376 0.624 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -0.528 0.549 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.211 4.211 4 C 0.041 3.959 5 H 0.121 0.879 6 O -0.364 6.364 7 C -0.034 4.034 8 N -0.395 5.395 9 C 0.342 3.658 10 O -0.378 6.378 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.258 4.258 16 C 0.130 3.870 17 O -0.023 6.023 18 C -0.479 4.479 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.465 5.465 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.224 0.776 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.753 0.281 0.038 14.755 hybrid contribution 0.874 -0.389 0.096 0.961 sum -13.879 -0.108 0.134 13.880 Atomic orbital electron populations 1.21747 0.94357 1.02240 1.01527 1.21751 0.96865 0.97349 0.98397 1.21908 1.01963 0.95134 1.02081 1.22247 0.91806 0.83157 0.98678 0.87923 1.86551 1.76727 1.23164 1.49908 1.21973 0.93488 0.98620 0.89282 1.45776 1.07311 1.61159 1.25271 1.18252 0.81421 0.79874 0.86206 1.90941 1.54426 1.46731 1.45726 1.18859 0.91272 1.13466 0.99570 1.20787 0.97295 0.94606 0.92939 1.20470 0.95241 1.09037 1.00218 1.20899 0.93119 0.95785 0.97156 1.21159 1.00611 1.06876 0.97160 1.19283 0.89131 0.90359 0.88208 1.84177 1.15866 1.65126 1.37167 1.21548 0.79239 1.36906 1.10236 0.88837 1.25384 1.00203 0.95500 0.95248 1.70141 1.34603 1.30429 1.11346 0.85662 0.80512 0.78500 0.78817 1.18975 1.20031 1.20028 0.92721 0.92830 0.92032 0.90657 0.92362 0.92393 0.91632 0.77638 0.90723 0.91731 0.76915 0.86946 0.87259 0.87193 0.85084 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.05 37.16 0.34 -0.78 16 2 C -0.12 -1.09 2.69 -90.62 -0.24 -1.33 16 3 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 4 C 0.10 1.04 2.63 -26.73 -0.07 0.96 16 5 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 6 O -0.56 -5.78 12.41 -35.23 -0.44 -6.21 16 7 C 0.09 1.27 4.98 -4.04 -0.02 1.25 16 8 N -0.74 -12.16 5.40 -61.35 -0.33 -12.50 16 9 C 0.55 12.36 7.76 -12.47 -0.10 12.26 16 10 O -0.50 -13.93 15.17 -16.56 -0.25 -14.19 16 11 C -0.23 -5.03 5.89 -104.81 -0.62 -5.65 16 12 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 13 C -0.23 -3.87 10.02 -39.61 -0.40 -4.27 16 14 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.21 9.16 -39.44 -0.36 -5.57 16 16 C 0.19 4.78 6.66 -38.60 -0.26 4.52 16 17 O -0.13 -3.73 7.84 -21.07 -0.17 -3.90 16 18 C -0.40 -11.52 9.49 30.90 0.29 -11.23 16 19 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 20 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 21 N -0.83 -25.27 13.67 55.48 0.76 -24.52 16 22 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 33 H 0.38 2.98 9.04 45.56 0.41 3.39 16 34 H 0.07 1.12 6.43 -51.93 -0.33 0.79 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 5.55 6.38 -40.82 -0.26 5.29 16 37 H 0.11 1.58 6.40 -52.49 -0.34 1.24 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -35.06 342.23 -7.02 -42.08 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.76 Total: 10.52 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.97 Total: -12.08 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.43 Total: -37.01 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.85 Total: -24.30 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.06 -7.02 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178649190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.527 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds