Wall clock time and date at job start Tue Mar 31 2020 07:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 C 1.52997 * 109.46972 * 120.00614 * 2 1 3 5 5 H 1.09002 * 109.47340 * 299.99068 * 4 2 1 6 6 O 1.42898 * 109.47706 * 59.99871 * 4 2 1 7 7 C 1.53005 * 109.46972 * 179.97438 * 4 2 1 8 8 N 1.46504 * 109.47239 * 179.97438 * 7 4 2 9 9 C 1.34777 * 119.99800 * 179.97438 * 8 7 4 10 10 O 1.21585 * 119.99914 * 359.97438 * 9 8 7 11 11 C 1.47534 * 119.99436 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.19959 * 359.97438 * 11 9 8 13 13 C 1.37833 * 119.91839 * 179.97438 * 12 11 9 14 14 C 1.38567 * 120.32258 * 0.02562 * 13 12 11 15 15 C 1.38029 * 120.40619 * 0.02562 * 14 13 12 16 16 C 1.38833 * 120.06664 * 359.95361 * 15 14 13 17 17 O 1.35524 * 120.15909 * 180.02562 * 16 15 14 18 18 C 1.34815 * 116.99762 * 354.40543 * 17 16 15 19 19 H 1.08001 * 120.00398 * 5.06019 * 18 17 16 20 20 C 1.38698 * 119.99875 * 185.06601 * 18 17 16 21 21 N 1.31529 * 119.99965 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00327 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46816 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47408 * 119.99516 * 22 20 18 25 25 H 1.48503 * 109.46953 * 239.99842 * 22 20 18 26 26 H 1.09004 * 109.46832 * 299.99789 * 1 2 3 27 27 H 1.08995 * 109.46916 * 59.99585 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46832 * 240.00211 * 2 1 3 30 30 H 1.09000 * 109.47200 * 300.00509 * 3 2 1 31 31 H 1.09004 * 109.46963 * 60.00291 * 3 2 1 32 32 H 1.09000 * 109.46835 * 179.97438 * 3 2 1 33 33 H 0.96699 * 114.00346 * 59.99407 * 6 4 2 34 34 H 1.08992 * 109.47361 * 59.99330 * 7 4 2 35 35 H 1.09004 * 109.46832 * 299.99597 * 7 4 2 36 36 H 0.96997 * 119.99877 * 359.97438 * 8 7 4 37 37 H 1.07999 * 120.04029 * 0.02562 * 12 11 9 38 38 H 1.07997 * 119.83568 * 180.29263 * 13 12 11 39 39 H 1.08002 * 119.80042 * 179.97438 * 14 13 12 40 40 H 1.07993 * 119.96591 * 179.97438 * 15 14 13 41 41 H 0.96992 * 120.00366 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6768 -0.2076 2.1392 6 8 1.5637 -2.0686 1.2491 7 6 3.5701 -0.7219 1.2488 8 7 4.0584 -1.4121 2.4452 9 6 5.3835 -1.5361 2.6580 10 8 6.1736 -1.0755 1.8567 11 6 5.8752 -2.2307 3.8631 12 6 4.9714 -2.7608 4.7864 13 6 5.4371 -3.4091 5.9101 14 6 6.7993 -3.5375 6.1295 15 6 7.7044 -3.0177 5.2263 16 6 7.2535 -2.3620 4.0888 17 8 8.1406 -1.8514 3.2005 18 6 9.4451 -1.9107 3.5355 19 1 9.7486 -2.4230 4.4365 20 6 10.3975 -1.3135 2.7230 21 7 10.0280 -0.6899 1.6255 22 14 12.2050 -1.3950 3.1874 23 1 12.3559 -2.1473 4.4588 24 1 12.9620 -2.0837 2.1114 25 1 12.7338 -0.0183 3.3616 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.8489 -2.5867 0.4841 34 1 3.9338 0.3055 1.2486 35 1 3.9330 -1.2360 0.3588 36 1 3.4281 -1.7799 3.0842 37 1 3.9087 -2.6637 4.6197 38 1 4.7370 -3.8226 6.6208 39 1 7.1549 -4.0467 7.0130 40 1 8.7645 -3.1215 5.4046 41 1 10.6940 -0.2727 1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178649190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:40 Heat of formation + Delta-G solvation = -124.331389 kcal Electronic energy + Delta-G solvation = -23397.493923 eV Core-core repulsion = 19855.801975 eV Total energy + Delta-G solvation = -3541.691947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31837 -40.12486 -39.04191 -38.01946 -35.25991 -35.12680 -34.32022 -32.25943 -30.57367 -29.44075 -27.78650 -27.34595 -25.06748 -23.82987 -22.88474 -21.83682 -21.10546 -19.85790 -19.33342 -17.95539 -17.65913 -17.11416 -16.54565 -16.27209 -16.02559 -15.96257 -15.63706 -15.37375 -15.27754 -15.15615 -14.72889 -14.33163 -14.17815 -13.66332 -13.54861 -13.36684 -13.10123 -12.99541 -12.84124 -12.69911 -12.54645 -12.34038 -12.29953 -12.09647 -11.83386 -11.52678 -11.42764 -10.97936 -10.84570 -10.55153 -10.10997 -9.77985 -9.03936 -8.44988 -6.16017 0.12060 0.72360 1.32312 1.42944 1.52239 2.09180 2.15553 2.24527 2.87460 3.22212 3.42614 3.46849 3.62328 3.81534 3.98921 4.02116 4.08841 4.23258 4.29210 4.37692 4.51762 4.60449 4.64226 4.74890 4.82275 4.88791 4.97997 4.98773 5.07445 5.07888 5.13900 5.21237 5.40435 5.43714 5.48325 5.54626 5.60900 5.69372 5.96175 6.16709 6.67270 6.75833 6.94429 7.47881 7.80218 8.75857 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.004035 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.511961 B = 6938.153302 C = 8412.867913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C -0.154 4.154 4 C 0.118 3.882 5 H 0.112 0.888 6 O -0.562 6.562 7 C 0.088 3.912 8 N -0.713 5.713 9 C 0.546 3.454 10 O -0.570 6.570 11 C -0.246 4.246 12 C -0.030 4.030 13 C -0.201 4.201 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.150 3.850 17 O -0.189 6.189 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.022 4.022 21 N -0.906 5.906 22 Si 1.023 2.977 23 H -0.246 1.246 24 H -0.268 1.268 25 H -0.269 1.269 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.387 0.613 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.412 0.588 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.022 -2.201 3.477 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 C -0.212 4.212 4 C 0.058 3.942 5 H 0.130 0.870 6 O -0.369 6.369 7 C -0.037 4.037 8 N -0.368 5.368 9 C 0.336 3.664 10 O -0.450 6.450 11 C -0.251 4.251 12 C -0.048 4.048 13 C -0.219 4.219 14 C -0.058 4.058 15 C -0.277 4.277 16 C 0.095 3.905 17 O -0.092 6.092 18 C -0.504 4.504 19 H 0.124 0.876 20 C -0.221 4.221 21 N -0.541 5.541 22 Si 0.841 3.159 23 H -0.169 1.169 24 H -0.193 1.193 25 H -0.194 1.194 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.237 0.763 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.250 0.750 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.685 -1.444 3.029 18.000 hybrid contribution 1.327 -0.026 -0.595 1.454 sum -16.358 -1.470 2.435 16.603 Atomic orbital electron populations 1.21704 0.93000 1.02463 1.02174 1.21714 0.97775 0.96842 0.97577 1.21913 1.00651 0.95644 1.02971 1.22109 0.88402 0.83724 0.99940 0.87049 1.86526 1.76479 1.23072 1.50824 1.22180 0.96433 0.97329 0.87710 1.45544 1.05523 1.59735 1.25980 1.18561 0.82731 0.79290 0.85835 1.90922 1.56531 1.49633 1.47904 1.19312 0.91152 1.13993 1.00636 1.21292 0.98716 0.92948 0.91848 1.21177 0.95554 1.05510 0.99654 1.21437 0.93258 0.93942 0.97127 1.21308 1.01357 1.07736 0.97326 1.20075 0.90146 0.91036 0.89287 1.84179 1.16550 1.68704 1.39759 1.22090 0.79825 1.37471 1.10982 0.87578 1.26763 1.05672 0.94780 0.94912 1.70330 1.36408 1.33715 1.13690 0.84494 0.73269 0.78884 0.79237 1.16854 1.19330 1.19384 0.92426 0.91887 0.91975 0.90488 0.91257 0.91787 0.93684 0.76350 0.92061 0.92937 0.75009 0.82539 0.81850 0.82772 0.85860 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.05 71.98 0.65 -1.16 16 2 C -0.12 -1.93 2.69 -10.79 -0.03 -1.96 16 3 C -0.15 -2.67 8.84 71.98 0.64 -2.03 16 4 C 0.12 2.23 2.63 30.59 0.08 2.31 16 5 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 6 O -0.56 -10.18 12.41 -148.98 -1.85 -12.03 16 7 C 0.09 2.48 4.98 86.38 0.43 2.91 16 8 N -0.71 -23.14 5.40 -466.26 -2.52 -25.66 16 9 C 0.55 25.31 7.76 86.69 0.67 25.98 16 10 O -0.57 -34.11 15.17 16.91 0.26 -33.85 16 11 C -0.25 -10.95 5.89 -19.99 -0.12 -11.07 16 12 C -0.03 -0.93 9.54 22.52 0.21 -0.71 16 13 C -0.20 -5.51 10.02 22.25 0.22 -5.29 16 14 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 15 C -0.26 -11.19 9.16 22.36 0.20 -10.98 16 16 C 0.15 7.84 6.66 22.91 0.15 7.99 16 17 O -0.19 -12.20 7.84 0.79 0.01 -12.20 16 18 C -0.43 -26.14 9.49 67.93 0.64 -25.49 16 19 H 0.11 5.82 5.21 -2.91 -0.02 5.81 16 20 C -0.02 -1.33 5.49 84.85 0.47 -0.86 16 21 N -0.91 -59.55 13.67 21.62 0.30 -59.25 16 22 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.84 7.68 -2.39 -0.02 0.82 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.04 0.96 6.43 -2.39 -0.02 0.94 16 33 H 0.39 5.31 9.04 -74.06 -0.67 4.64 16 34 H 0.06 1.94 6.43 -2.39 -0.02 1.93 16 35 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.41 10.42 6.38 -92.71 -0.59 9.83 16 37 H 0.16 3.47 6.40 -2.91 -0.02 3.46 16 38 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 39 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 41 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -87.29 342.23 2.48 -84.81 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.19 Total: 33.04 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.45 Total: -21.38 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.22 Total: -84.91 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -1.59 Total: -58.08 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -87.29 2.48 -84.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178649190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.525 kcal (2) G-P(sol) polarization free energy of solvation -87.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds