Wall clock time and date at job start Tue Mar 31 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47090 * 64.97793 * 6 5 4 8 8 C 1.52996 * 109.47048 * 184.97591 * 6 5 4 9 9 N 1.46896 * 109.46996 * 304.97711 * 6 5 4 10 10 C 1.46898 * 111.00043 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47359 * 179.97438 * 10 9 6 12 12 H 1.09005 * 109.46995 * 54.99378 * 11 10 9 13 13 C 1.47200 * 109.47386 * 295.00143 * 11 10 9 14 14 N 7.32014 * 140.13007 * 257.25988 * 2 1 3 15 15 C 1.52994 * 109.47425 * 174.99626 * 11 10 9 16 16 C 1.50707 * 109.47506 * 184.99936 * 15 11 10 17 17 H 1.08003 * 119.99670 * 0.02562 * 16 15 11 18 18 C 1.37878 * 119.99976 * 179.97438 * 16 15 11 19 19 N 1.31505 * 119.99872 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99609 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47322 * 90.00259 * 20 18 16 22 22 H 1.48503 * 109.47312 * 210.00120 * 20 18 16 23 23 H 1.48499 * 109.47408 * 330.00134 * 20 18 16 24 24 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 25 25 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 28 28 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 29 29 H 1.08991 * 109.47396 * 59.99724 * 7 6 5 30 30 H 1.09001 * 109.46649 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.46943 * 300.00033 * 7 6 5 32 32 H 1.09008 * 109.47053 * 59.99956 * 8 6 5 33 33 H 1.09001 * 109.47080 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47559 * 300.00083 * 8 6 5 35 35 H 1.00898 * 111.00359 * 303.95679 * 9 6 5 36 36 H 1.09000 * 109.46669 * 299.99583 * 10 9 6 37 37 H 1.08998 * 109.47667 * 59.99792 * 10 9 6 38 38 H 1.09007 * 109.47435 * 304.99971 * 15 11 10 39 39 H 1.09003 * 109.47260 * 64.99869 * 15 11 10 40 40 H 0.97005 * 119.99939 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 6 6.0364 -0.5175 1.3066 8 6 5.3588 -2.4493 -0.1255 9 7 6.0780 -0.3374 -1.1353 10 6 7.4710 -0.8027 -1.1678 11 6 8.1917 -0.1719 -2.3609 12 1 8.0968 0.9128 -2.3107 13 6 7.5890 -0.6596 -3.6122 14 7 7.1252 -1.0348 -4.5770 15 6 9.6721 -0.5566 -2.3241 16 6 10.4057 0.1625 -3.4268 17 1 9.8696 0.8278 -4.0876 18 6 11.7612 -0.0280 -3.5915 19 7 12.4139 -0.8376 -2.7866 20 14 12.6702 0.8628 -4.9587 21 1 13.1668 2.1682 -4.4544 22 1 13.8192 0.0368 -5.4093 23 1 11.7475 1.0914 -6.0996 24 16 2.5436 -1.4247 0.0079 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 1.9024 2.0875 0.0004 29 1 5.4987 -0.9530 2.1486 30 1 7.0651 -0.8779 1.3063 31 1 6.0324 0.5689 1.3957 32 1 4.8720 -2.7393 -1.0567 33 1 6.3874 -2.8101 -0.1260 34 1 4.8210 -2.8850 0.7165 35 1 5.6097 -0.5380 -2.0063 36 1 7.9726 -0.5122 -0.2448 37 1 7.4894 -1.8882 -1.2652 38 1 10.0971 -0.2743 -1.3608 39 1 9.7714 -1.6331 -2.4635 40 1 13.3676 -0.9720 -2.9026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183924779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:12 Heat of formation + Delta-G solvation = 56.063211 kcal Electronic energy + Delta-G solvation = -20656.422602 eV Core-core repulsion = 17597.598773 eV Total energy + Delta-G solvation = -3058.823828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04461 -38.26355 -36.24265 -33.94239 -32.85625 -32.06228 -29.98074 -27.58124 -27.35482 -26.28471 -24.47921 -23.17079 -21.80329 -20.79555 -19.02229 -17.93720 -16.77221 -16.54630 -15.96667 -15.41508 -15.05167 -14.68554 -14.34946 -14.10284 -13.76487 -13.31513 -13.17539 -13.07921 -13.06152 -12.82382 -12.70018 -12.30135 -12.05794 -11.91472 -11.78874 -11.51359 -11.40496 -11.25105 -11.15519 -10.90393 -10.69015 -10.54493 -10.25052 -9.66563 -9.50065 -9.33641 -9.23147 -8.90697 -8.44775 -8.34294 -6.08897 -4.11655 0.55360 1.16585 1.61147 2.75567 3.30433 3.37040 3.41936 3.58392 3.64427 3.91282 4.19084 4.43068 4.65892 4.67775 4.82553 4.86347 4.90720 5.02822 5.15902 5.29322 5.36658 5.45418 5.46200 5.54228 5.60065 5.63760 5.70065 5.78210 5.94937 6.06572 6.16060 6.27350 6.38739 6.55615 7.03065 7.36633 7.44345 7.53607 7.71922 7.86478 8.24156 8.41051 8.92825 9.53780 11.02025 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.003120 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.469656 B = 8971.659635 C = 9218.608353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.234 4.234 3 C 0.033 3.967 4 N -0.443 5.443 5 C 0.063 3.937 6 C 0.191 3.809 7 C -0.134 4.134 8 C -0.196 4.196 9 N -0.666 5.666 10 C 0.062 3.938 11 C 0.007 3.993 12 H 0.112 0.888 13 C 0.241 3.759 14 N -0.477 5.477 15 C 0.033 3.967 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.274 1.274 24 S 0.111 5.889 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.172 0.828 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.340 0.660 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.024 0.976 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 -1.380 11.629 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.355 4.355 3 C -0.118 4.118 4 N -0.155 5.155 5 C -0.216 4.216 6 C 0.096 3.904 7 C -0.193 4.193 8 C -0.256 4.256 9 N -0.297 5.297 10 C -0.067 4.067 11 C -0.015 4.015 12 H 0.130 0.870 13 C -0.075 4.075 14 N -0.154 5.154 15 C -0.005 4.005 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.199 1.199 24 S 0.366 5.634 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.189 0.811 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.088 -2.091 10.545 23.670 hybrid contribution 0.327 0.614 -0.862 1.108 sum -20.760 -1.477 9.683 22.955 Atomic orbital electron populations 1.20202 0.86971 1.03208 1.02857 1.26055 1.01562 0.95554 1.12347 1.21789 0.87087 1.00004 1.02954 1.66176 1.16852 1.18586 1.13928 1.26998 0.99582 0.91198 1.03797 1.19385 0.85333 0.91157 0.94522 1.21874 1.00448 1.03504 0.93448 1.22730 1.04311 0.95834 1.02733 1.60656 1.02625 1.61557 1.04892 1.22256 0.87329 0.97634 0.99505 1.19337 0.97668 1.01533 0.82967 0.87027 1.29263 0.91297 0.92291 0.94681 1.80961 1.12296 1.10643 1.11484 1.19158 0.84936 0.97668 0.98758 1.21149 0.93360 1.27008 1.14860 0.92513 1.24942 0.97680 0.95156 0.96178 1.69932 1.08987 1.36373 1.37774 0.86595 0.79424 0.79683 0.82409 1.20422 1.21185 1.19896 1.83957 0.98966 1.11540 1.68911 0.90642 0.90332 0.91266 0.81064 0.92469 0.90826 0.90520 0.91963 0.89717 0.91413 0.84200 0.88426 0.94140 0.94152 0.95743 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.42 36.01 0.38 -0.09 16 2 C -0.23 -2.26 6.60 -35.92 -0.24 -2.50 16 3 C 0.03 0.36 11.25 -19.18 -0.22 0.15 16 4 N -0.44 -6.00 10.54 -11.86 -0.13 -6.13 16 5 C 0.06 0.78 6.02 -13.45 -0.08 0.70 16 6 C 0.19 2.26 0.93 -132.75 -0.12 2.14 16 7 C -0.13 -1.46 8.22 37.16 0.31 -1.16 16 8 C -0.20 -2.02 7.30 37.16 0.27 -1.75 16 9 N -0.67 -9.27 6.07 -101.14 -0.61 -9.88 16 10 C 0.06 0.91 4.33 -3.83 -0.02 0.89 16 11 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 12 H 0.11 2.03 8.14 -51.93 -0.42 1.60 16 13 C 0.24 4.93 12.97 -20.81 -0.27 4.66 16 14 N -0.48 -10.50 18.53 42.09 0.78 -9.72 16 15 C 0.03 0.77 4.42 -27.88 -0.12 0.64 16 16 C -0.53 -14.02 8.60 -34.44 -0.30 -14.32 16 17 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 24 S 0.11 1.12 21.59 -107.50 -2.32 -1.20 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.66 8.03 -51.92 -0.42 0.25 16 33 H 0.08 0.86 6.40 -51.93 -0.33 0.53 16 34 H 0.07 0.59 7.81 -51.93 -0.41 0.19 16 35 H 0.34 5.08 7.79 -39.29 -0.31 4.77 16 36 H 0.10 1.32 6.30 -51.93 -0.33 0.99 16 37 H 0.04 0.57 6.30 -51.93 -0.33 0.25 16 38 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -30.85 347.96 -7.84 -38.69 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.79 Total: 0.44 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.73 Total: -9.10 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.78 Total: -50.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.32 Total: -1.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.85 -7.84 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183924779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.751 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds