Wall clock time and date at job start Tue Mar 31 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47090 * 64.97793 * 6 5 4 8 8 C 1.52996 * 109.47048 * 184.97591 * 6 5 4 9 9 N 1.46896 * 109.46996 * 304.97711 * 6 5 4 10 10 C 1.46898 * 111.00043 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47359 * 179.97438 * 10 9 6 12 12 H 1.09005 * 109.46995 * 54.99378 * 11 10 9 13 13 C 1.47200 * 109.47386 * 295.00143 * 11 10 9 14 14 N 7.32014 * 140.13007 * 257.25988 * 2 1 3 15 15 C 1.52994 * 109.47425 * 174.99626 * 11 10 9 16 16 C 1.50707 * 109.47506 * 184.99936 * 15 11 10 17 17 H 1.08003 * 119.99670 * 0.02562 * 16 15 11 18 18 C 1.37878 * 119.99976 * 179.97438 * 16 15 11 19 19 N 1.31505 * 119.99872 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99609 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47322 * 90.00259 * 20 18 16 22 22 H 1.48503 * 109.47312 * 210.00120 * 20 18 16 23 23 H 1.48499 * 109.47408 * 330.00134 * 20 18 16 24 24 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 25 25 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 28 28 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 29 29 H 1.08991 * 109.47396 * 59.99724 * 7 6 5 30 30 H 1.09001 * 109.46649 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.46943 * 300.00033 * 7 6 5 32 32 H 1.09008 * 109.47053 * 59.99956 * 8 6 5 33 33 H 1.09001 * 109.47080 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47559 * 300.00083 * 8 6 5 35 35 H 1.00898 * 111.00359 * 303.95679 * 9 6 5 36 36 H 1.09000 * 109.46669 * 299.99583 * 10 9 6 37 37 H 1.08998 * 109.47667 * 59.99792 * 10 9 6 38 38 H 1.09007 * 109.47435 * 304.99971 * 15 11 10 39 39 H 1.09003 * 109.47260 * 64.99869 * 15 11 10 40 40 H 0.97005 * 119.99939 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 6 6.0364 -0.5175 1.3066 8 6 5.3588 -2.4493 -0.1255 9 7 6.0780 -0.3374 -1.1353 10 6 7.4710 -0.8027 -1.1678 11 6 8.1917 -0.1719 -2.3609 12 1 8.0968 0.9128 -2.3107 13 6 7.5890 -0.6596 -3.6122 14 7 7.1252 -1.0348 -4.5770 15 6 9.6721 -0.5566 -2.3241 16 6 10.4057 0.1625 -3.4268 17 1 9.8696 0.8278 -4.0876 18 6 11.7612 -0.0280 -3.5915 19 7 12.4139 -0.8376 -2.7866 20 14 12.6702 0.8628 -4.9587 21 1 13.1668 2.1682 -4.4544 22 1 13.8192 0.0368 -5.4093 23 1 11.7475 1.0914 -6.0996 24 16 2.5436 -1.4247 0.0079 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 1.9024 2.0875 0.0004 29 1 5.4987 -0.9530 2.1486 30 1 7.0651 -0.8779 1.3063 31 1 6.0324 0.5689 1.3957 32 1 4.8720 -2.7393 -1.0567 33 1 6.3874 -2.8101 -0.1260 34 1 4.8210 -2.8850 0.7165 35 1 5.6097 -0.5380 -2.0063 36 1 7.9726 -0.5122 -0.2448 37 1 7.4894 -1.8882 -1.2652 38 1 10.0971 -0.2743 -1.3608 39 1 9.7714 -1.6331 -2.4635 40 1 13.3676 -0.9720 -2.9026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183924779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:12 Heat of formation + Delta-G solvation = 36.931856 kcal Electronic energy + Delta-G solvation = -20657.252200 eV Core-core repulsion = 17597.598773 eV Total energy + Delta-G solvation = -3059.653426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91114 -39.39093 -37.70175 -35.67401 -34.27619 -33.14285 -31.31822 -28.41821 -28.26066 -27.83317 -25.35955 -24.49793 -23.56153 -21.70827 -19.89855 -18.78580 -18.50622 -18.23507 -17.07496 -16.71191 -16.24710 -15.93009 -15.38737 -15.05732 -14.87281 -14.65277 -14.44518 -14.27371 -13.98597 -13.77443 -13.71222 -13.57358 -13.46768 -13.19904 -13.01332 -12.83936 -12.71998 -12.57281 -12.38780 -12.27830 -12.05737 -12.01999 -11.86737 -11.40561 -11.17764 -10.53880 -10.44272 -10.13223 -9.69724 -9.41281 -8.19008 -6.26594 -0.25412 0.38704 0.80431 1.40256 1.41855 1.50997 1.90466 1.94470 1.97110 2.41854 3.08956 3.13259 3.16131 3.25205 3.81771 3.98002 4.07429 4.19445 4.24228 4.29865 4.38512 4.56925 4.62271 4.72007 4.74878 4.80785 4.91260 4.92230 4.94311 5.02340 5.07899 5.20060 5.30123 5.39489 5.48635 5.64270 5.80204 5.96485 6.21579 6.23679 6.74450 6.87627 6.89806 7.41643 8.91823 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.003120 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.469656 B = 8971.659635 C = 9218.608353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.225 4.225 3 C 0.007 3.993 4 N -0.474 5.474 5 C 0.038 3.962 6 C 0.189 3.811 7 C -0.131 4.131 8 C -0.192 4.192 9 N -0.672 5.672 10 C 0.075 3.925 11 C 0.019 3.981 12 H 0.118 0.882 13 C 0.252 3.748 14 N -0.505 5.505 15 C 0.041 3.959 16 C -0.540 4.540 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.921 5.921 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.278 1.278 24 S 0.136 5.864 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.187 0.813 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.332 0.668 36 H 0.112 0.888 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.004 0.996 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.318 -1.396 12.281 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.346 4.346 3 C -0.143 4.143 4 N -0.187 5.187 5 C -0.240 4.240 6 C 0.095 3.905 7 C -0.189 4.189 8 C -0.252 4.252 9 N -0.303 5.303 10 C -0.055 4.055 11 C -0.003 4.003 12 H 0.135 0.865 13 C -0.064 4.064 14 N -0.183 5.183 15 C 0.002 3.998 16 C -0.578 4.578 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.203 1.203 24 S 0.391 5.609 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.204 0.796 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.453 -2.102 11.207 25.182 hybrid contribution 0.648 0.621 -1.050 1.382 sum -21.804 -1.481 10.158 24.100 Atomic orbital electron populations 1.20364 0.84535 1.04625 1.03822 1.26523 1.03127 0.94865 1.10104 1.22083 0.86700 1.01272 1.04219 1.66157 1.18351 1.19594 1.14607 1.27026 1.00357 0.91567 1.05051 1.19470 0.85303 0.91966 0.93774 1.21852 1.00996 1.02489 0.93609 1.22689 1.04623 0.94663 1.03225 1.60612 1.02231 1.62181 1.05263 1.22101 0.87777 0.97608 0.98028 1.19236 0.95330 1.02034 0.83743 0.86471 1.29615 0.90668 0.91527 0.94631 1.80956 1.13288 1.11678 1.12362 1.18972 0.87485 0.95902 0.97445 1.21547 0.93838 1.26862 1.15540 0.93108 1.25671 0.98701 0.95997 0.98236 1.70017 1.09292 1.37616 1.39209 0.85719 0.78179 0.79080 0.79740 1.19246 1.20865 1.20284 1.83788 0.97862 1.11101 1.68185 0.89738 0.88672 0.90098 0.79624 0.90980 0.90191 0.92172 0.92472 0.89584 0.89685 0.85065 0.87009 0.93534 0.94328 0.97731 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.42 71.24 0.74 0.00 16 2 C -0.22 -3.93 6.60 24.64 0.16 -3.77 16 3 C 0.01 0.16 11.25 83.65 0.94 1.10 16 4 N -0.47 -12.59 10.54 -191.44 -2.02 -14.61 16 5 C 0.04 0.91 6.02 88.52 0.53 1.44 16 6 C 0.19 4.29 0.93 2.78 0.00 4.29 16 7 C -0.13 -2.70 8.22 71.98 0.59 -2.11 16 8 C -0.19 -3.67 7.30 71.98 0.53 -3.14 16 9 N -0.67 -18.27 6.07 -473.91 -2.88 -21.14 16 10 C 0.07 2.10 4.33 86.30 0.37 2.48 16 11 C 0.02 0.67 2.42 -12.60 -0.03 0.64 16 12 H 0.12 4.19 8.14 -2.38 -0.02 4.17 16 13 C 0.25 10.24 12.97 89.46 1.16 11.40 16 14 N -0.51 -22.24 18.53 19.99 0.37 -21.87 16 15 C 0.04 1.87 4.42 29.85 0.13 2.00 16 16 C -0.54 -28.83 8.60 25.60 0.22 -28.61 16 17 H 0.05 2.72 7.59 -2.91 -0.02 2.69 16 18 C 0.01 0.72 5.46 84.66 0.46 1.18 16 19 N -0.92 -52.76 13.29 21.45 0.28 -52.47 16 20 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 S 0.14 2.52 21.59 -56.49 -1.22 1.30 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.51 6.40 -2.39 -0.02 1.49 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.06 1.15 8.03 -2.38 -0.02 1.13 16 33 H 0.09 1.61 6.40 -2.39 -0.02 1.60 16 34 H 0.08 1.31 7.81 -2.39 -0.02 1.29 16 35 H 0.33 9.82 7.79 -89.70 -0.70 9.12 16 36 H 0.11 2.86 6.30 -2.39 -0.02 2.85 16 37 H 0.05 1.27 6.30 -2.39 -0.02 1.25 16 38 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 40 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -65.40 347.96 2.73 -62.66 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.35 Total: 13.39 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 5.82 Total: -13.10 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.24 Total: -110.10 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.22 Total: 1.30 kcal Total: -65.40 2.73 -62.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183924779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.596 kcal (2) G-P(sol) polarization free energy of solvation -65.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds