Wall clock time and date at job start Tue Mar 31 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.40366 * 126.43996 * 265.02933 * 3 2 1 5 5 C 1.36547 * 106.70418 * 179.97438 * 4 3 2 6 6 C 1.46658 * 125.98514 * 180.02562 * 5 4 3 7 7 O 1.21695 * 119.99945 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00113 * 180.02562 * 6 5 4 9 9 C 1.47067 * 136.05700 * 359.62274 * 8 6 5 10 10 C 1.53757 * 87.89089 * 152.96890 * 9 8 6 11 11 O 1.42902 * 114.39301 * 272.67730 * 10 9 8 12 12 C 1.50694 * 114.27029 * 139.79148 * 10 9 8 13 13 H 1.07995 * 120.00475 * 266.48070 * 12 10 9 14 14 C 1.37876 * 119.99766 * 86.47329 * 12 10 9 15 15 N 1.31515 * 120.00373 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 120.00099 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46643 * 60.00301 * 16 14 12 18 18 H 1.48495 * 109.47272 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46863 * 300.00747 * 16 14 12 20 20 C 1.47071 * 136.06148 * 180.02562 * 8 6 5 21 21 O 1.34905 * 108.02793 * 359.97438 * 5 4 3 22 22 C 1.33937 * 109.38248 * 359.75435 * 21 5 4 23 23 C 1.50703 * 125.61456 * 180.27210 * 22 21 5 24 24 C 1.52999 * 109.47184 * 270.15539 * 23 22 21 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.07996 * 126.65045 * 359.94952 * 4 3 2 31 31 H 1.09006 * 113.46750 * 267.70265 * 9 8 6 32 32 H 1.09008 * 113.46511 * 38.13914 * 9 8 6 33 33 H 0.96697 * 114.00179 * 273.58493 * 11 10 9 34 34 H 0.97001 * 120.00132 * 179.97438 * 15 14 12 35 35 H 1.09000 * 113.46355 * 321.86457 * 20 8 6 36 36 H 1.09000 * 113.46503 * 92.23985 * 20 8 6 37 37 H 1.08994 * 109.47021 * 30.15567 * 23 22 21 38 38 H 1.09005 * 109.46679 * 150.15405 * 23 22 21 39 39 H 1.09004 * 109.46795 * 300.00382 * 24 23 22 40 40 H 1.08996 * 109.46911 * 60.00060 * 24 23 22 41 41 H 1.08997 * 109.46946 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4024 2.1743 -1.1250 5 6 2.7926 3.3996 -0.6657 6 6 3.2633 4.5185 -1.4886 7 8 3.3324 4.3978 -2.6976 8 7 3.6202 5.6802 -0.9060 9 6 3.6721 6.2040 0.4673 10 6 4.7973 7.1446 0.0054 11 8 6.1077 6.5799 0.0828 12 6 4.7140 8.5369 0.5759 13 1 4.2102 9.3172 0.0247 14 6 5.2807 8.8146 1.8017 15 7 5.8945 7.8646 2.4728 16 14 5.1769 10.5404 2.5093 17 1 3.7515 10.9209 2.6787 18 1 5.8594 10.5767 3.8276 19 1 5.8376 11.4954 1.5838 20 6 4.1224 6.9844 -1.3641 21 8 2.6682 3.4009 0.6776 22 6 2.2045 2.2113 1.0823 23 6 1.9247 1.8179 2.5099 24 6 3.1841 1.2060 3.1265 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.3829 1.8481 -2.1543 31 1 2.7642 6.7276 0.7668 32 1 3.9954 5.4659 1.2014 33 1 6.5298 6.6826 0.9468 34 1 6.2936 8.0602 3.3351 35 1 4.8292 6.9113 -2.1907 36 1 3.3330 7.7132 -1.5480 37 1 1.6332 2.7003 3.0794 38 1 1.1165 1.0869 2.5335 39 1 3.4756 0.3236 2.5569 40 1 3.9922 1.9370 3.1028 41 1 2.9816 0.9211 4.1589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193968486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:57 Heat of formation + Delta-G solvation = -48.039683 kcal Electronic energy + Delta-G solvation = -23889.087996 eV Core-core repulsion = 20350.704305 eV Total energy + Delta-G solvation = -3538.383691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.54888 -39.47190 -37.38917 -35.50961 -34.04075 -33.53835 -32.20303 -31.15207 -29.52370 -27.91904 -25.57536 -25.11175 -24.40827 -23.24933 -21.50825 -20.72494 -19.59045 -18.38353 -17.55847 -16.69214 -16.25002 -15.74486 -15.49945 -15.11594 -14.76997 -14.50818 -14.16009 -14.07380 -13.77210 -13.24829 -13.05855 -12.81394 -12.68050 -12.56125 -12.44162 -12.35353 -11.99083 -11.65760 -11.56448 -11.50701 -11.28104 -11.06411 -11.03592 -10.83555 -10.50893 -10.27897 -9.93408 -9.55783 -9.32027 -8.79905 -8.46318 -8.27481 -7.85649 -6.41356 -4.52043 1.35863 2.43074 2.87470 3.15513 3.21371 3.23512 3.51695 3.65714 4.16994 4.59987 4.74911 4.77428 4.83997 4.92502 5.10962 5.21849 5.26091 5.27813 5.45702 5.54374 5.62563 5.66310 5.72897 5.74611 5.85522 5.96976 6.01436 6.05192 6.12020 6.14243 6.20178 6.39177 6.50481 6.56974 6.58585 6.72735 7.07403 7.20545 7.61478 7.78391 8.33072 8.51012 8.62055 9.19146 9.47869 10.65475 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.004266 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.244633 B = 6562.254713 C = 7471.269658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.189 4.189 4 C -0.130 4.130 5 C -0.052 4.052 6 C 0.617 3.383 7 O -0.546 6.546 8 N -0.624 5.624 9 C 0.075 3.925 10 C 0.241 3.759 11 O -0.570 6.570 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.910 3.090 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.108 3.892 21 O -0.148 6.148 22 C 0.013 3.987 23 C -0.045 4.045 24 C -0.151 4.151 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.394 0.606 34 H 0.275 0.725 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -12.455 2.482 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.190 4.190 4 C -0.150 4.150 5 C -0.104 4.104 6 C 0.406 3.594 7 O -0.428 6.428 8 N -0.355 5.355 9 C -0.048 4.048 10 C 0.199 3.801 11 O -0.384 6.384 12 C -0.573 4.573 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.737 3.263 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.013 4.013 21 O -0.043 6.043 22 C -0.040 4.040 23 C -0.083 4.083 24 C -0.208 4.208 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.355 -12.622 1.519 15.213 hybrid contribution -0.039 0.861 0.918 1.259 sum -8.394 -11.761 2.436 14.653 Atomic orbital electron populations 1.21761 0.95088 1.01371 1.02259 1.19898 0.95568 0.90700 1.02596 1.20066 1.08728 0.98303 0.91916 1.21685 1.01327 0.91891 1.00145 1.22123 1.10074 0.97842 0.80383 1.16041 0.77723 0.80145 0.85522 1.90808 1.57292 1.82136 1.12527 1.49657 1.61531 1.11191 1.13094 1.24344 1.01526 0.96369 0.82534 1.19574 0.80923 0.90371 0.89220 1.86044 1.29590 1.81332 1.41393 1.21379 1.37189 0.94793 1.03935 0.90871 1.25081 0.93599 0.98166 0.96136 1.69260 1.36516 1.32859 1.15129 0.86353 0.78603 0.83204 0.78161 1.19845 1.20961 1.19786 1.23411 0.96533 0.81115 1.00273 1.84145 1.64282 1.33626 1.22296 1.22554 1.00904 0.83725 0.96796 1.20147 0.99336 1.01646 0.87127 1.21779 0.97223 1.01328 1.00454 0.92497 0.92515 0.92721 0.91142 0.90963 0.82695 0.89977 0.91291 0.74910 0.91487 0.91159 0.89273 0.89744 0.88901 0.92249 0.91778 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.05 -0.50 5.96 -27.88 -0.17 -0.67 16 3 C -0.19 -2.62 5.39 -104.93 -0.57 -3.18 16 4 C -0.13 -2.15 10.57 -39.39 -0.42 -2.56 16 5 C -0.05 -1.01 7.09 -36.80 -0.26 -1.27 16 6 C 0.62 13.76 8.04 -12.86 -0.10 13.66 16 7 O -0.55 -13.15 17.64 5.19 0.09 -13.06 16 8 N -0.62 -14.06 3.69 -186.60 -0.69 -14.75 16 9 C 0.08 1.70 7.25 -8.38 -0.06 1.64 16 10 C 0.24 5.89 1.58 -91.11 -0.14 5.75 16 11 O -0.57 -15.03 13.55 -35.23 -0.48 -15.50 16 12 C -0.53 -13.41 8.70 -34.44 -0.30 -13.71 16 13 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 15 N -0.90 -22.76 11.01 55.43 0.61 -22.15 16 16 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.11 2.42 8.02 -8.50 -0.07 2.35 16 21 O -0.15 -2.73 9.25 5.01 0.05 -2.68 16 22 C 0.01 0.19 6.57 -35.41 -0.23 -0.04 16 23 C -0.05 -0.48 6.16 -27.88 -0.17 -0.65 16 24 C -0.15 -1.48 9.89 37.16 0.37 -1.11 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.47 7.71 -51.93 -0.40 0.07 16 28 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 31 H 0.08 1.77 8.10 -51.93 -0.42 1.35 16 32 H 0.07 1.61 7.50 -51.92 -0.39 1.22 16 33 H 0.39 10.44 6.32 45.56 0.29 10.73 16 34 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.76 7.43 -51.93 -0.39 0.37 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -29.02 349.02 -7.52 -36.54 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.50 Total: 11.08 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.85 Total: 0.97 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.08 Total: -36.90 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.34 Total: -31.24 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.02 -7.52 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193968486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.496 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds