Wall clock time and date at job start Tue Mar 31 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.40366 * 126.43996 * 265.02933 * 3 2 1 5 5 C 1.36547 * 106.70418 * 179.97438 * 4 3 2 6 6 C 1.46658 * 125.98514 * 180.02562 * 5 4 3 7 7 O 1.21695 * 119.99945 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00113 * 180.02562 * 6 5 4 9 9 C 1.47067 * 136.05700 * 359.62274 * 8 6 5 10 10 C 1.53757 * 87.89089 * 152.96890 * 9 8 6 11 11 O 1.42902 * 114.39301 * 272.67730 * 10 9 8 12 12 C 1.50694 * 114.27029 * 139.79148 * 10 9 8 13 13 H 1.07995 * 120.00475 * 266.48070 * 12 10 9 14 14 C 1.37876 * 119.99766 * 86.47329 * 12 10 9 15 15 N 1.31515 * 120.00373 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 120.00099 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46643 * 60.00301 * 16 14 12 18 18 H 1.48495 * 109.47272 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46863 * 300.00747 * 16 14 12 20 20 C 1.47071 * 136.06148 * 180.02562 * 8 6 5 21 21 O 1.34905 * 108.02793 * 359.97438 * 5 4 3 22 22 C 1.33937 * 109.38248 * 359.75435 * 21 5 4 23 23 C 1.50703 * 125.61456 * 180.27210 * 22 21 5 24 24 C 1.52999 * 109.47184 * 270.15539 * 23 22 21 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.07996 * 126.65045 * 359.94952 * 4 3 2 31 31 H 1.09006 * 113.46750 * 267.70265 * 9 8 6 32 32 H 1.09008 * 113.46511 * 38.13914 * 9 8 6 33 33 H 0.96697 * 114.00179 * 273.58493 * 11 10 9 34 34 H 0.97001 * 120.00132 * 179.97438 * 15 14 12 35 35 H 1.09000 * 113.46355 * 321.86457 * 20 8 6 36 36 H 1.09000 * 113.46503 * 92.23985 * 20 8 6 37 37 H 1.08994 * 109.47021 * 30.15567 * 23 22 21 38 38 H 1.09005 * 109.46679 * 150.15405 * 23 22 21 39 39 H 1.09004 * 109.46795 * 300.00382 * 24 23 22 40 40 H 1.08996 * 109.46911 * 60.00060 * 24 23 22 41 41 H 1.08997 * 109.46946 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4024 2.1743 -1.1250 5 6 2.7926 3.3996 -0.6657 6 6 3.2633 4.5185 -1.4886 7 8 3.3324 4.3978 -2.6976 8 7 3.6202 5.6802 -0.9060 9 6 3.6721 6.2040 0.4673 10 6 4.7973 7.1446 0.0054 11 8 6.1077 6.5799 0.0828 12 6 4.7140 8.5369 0.5759 13 1 4.2102 9.3172 0.0247 14 6 5.2807 8.8146 1.8017 15 7 5.8945 7.8646 2.4728 16 14 5.1769 10.5404 2.5093 17 1 3.7515 10.9209 2.6787 18 1 5.8594 10.5767 3.8276 19 1 5.8376 11.4954 1.5838 20 6 4.1224 6.9844 -1.3641 21 8 2.6682 3.4009 0.6776 22 6 2.2045 2.2113 1.0823 23 6 1.9247 1.8179 2.5099 24 6 3.1841 1.2060 3.1265 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.3829 1.8481 -2.1543 31 1 2.7642 6.7276 0.7668 32 1 3.9954 5.4659 1.2014 33 1 6.5298 6.6826 0.9468 34 1 6.2936 8.0602 3.3351 35 1 4.8292 6.9113 -2.1907 36 1 3.3330 7.7132 -1.5480 37 1 1.6332 2.7003 3.0794 38 1 1.1165 1.0869 2.5335 39 1 3.4756 0.3236 2.5569 40 1 3.9922 1.9370 3.1028 41 1 2.9816 0.9211 4.1589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193968486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:57 Heat of formation + Delta-G solvation = -66.529069 kcal Electronic energy + Delta-G solvation = -23889.889756 eV Core-core repulsion = 20350.704305 eV Total energy + Delta-G solvation = -3539.185451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.83269 -41.26537 -39.19258 -36.53092 -35.96343 -34.50146 -34.16231 -32.22792 -31.13563 -29.30382 -27.32129 -26.92819 -25.36221 -24.37779 -22.72045 -22.17868 -21.16288 -19.94572 -19.34162 -18.30483 -17.62505 -17.46321 -17.06352 -16.59906 -16.24958 -15.99050 -15.67641 -15.14512 -14.90826 -14.58819 -14.54828 -14.26749 -14.15604 -13.86455 -13.77567 -13.44576 -13.36158 -13.30254 -12.84820 -12.77224 -12.48820 -12.28153 -12.24270 -12.23721 -12.05114 -11.74200 -11.61678 -11.16366 -10.80246 -10.70639 -10.34404 -9.84252 -9.37912 -8.29831 -6.47997 -0.05138 1.23798 1.48190 1.48733 1.52793 1.58565 1.93712 2.03220 2.39590 2.91113 3.30879 3.62455 3.71870 3.73283 4.03012 4.09995 4.20064 4.29691 4.33930 4.42504 4.47087 4.54390 4.54765 4.65823 4.67974 4.75362 4.83361 4.84884 4.92949 4.96701 5.01862 5.12954 5.16483 5.28078 5.30608 5.37591 5.55258 5.69564 5.85233 5.92926 6.56086 6.59938 6.88587 7.25722 7.43140 8.76861 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.004266 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.244633 B = 6562.254713 C = 7471.269658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C -0.187 4.187 4 C -0.115 4.115 5 C -0.100 4.100 6 C 0.611 3.389 7 O -0.575 6.575 8 N -0.630 5.630 9 C 0.092 3.908 10 C 0.223 3.777 11 O -0.586 6.586 12 C -0.555 4.555 13 H 0.079 0.921 14 C 0.032 3.968 15 N -0.918 5.918 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.110 3.890 21 O -0.171 6.171 22 C 0.017 3.983 23 C -0.046 4.046 24 C -0.148 4.148 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.390 0.610 34 H 0.278 0.722 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 -13.723 3.885 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.188 4.188 4 C -0.136 4.136 5 C -0.152 4.152 6 C 0.403 3.597 7 O -0.459 6.459 8 N -0.361 5.361 9 C -0.031 4.031 10 C 0.181 3.819 11 O -0.399 6.399 12 C -0.593 4.593 13 H 0.097 0.903 14 C -0.168 4.168 15 N -0.559 5.559 16 Si 0.799 3.201 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.012 4.012 21 O -0.068 6.068 22 C -0.035 4.035 23 C -0.083 4.083 24 C -0.205 4.205 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.180 0.820 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.145 0.855 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.888 -13.899 2.914 17.305 hybrid contribution 0.423 1.133 0.515 1.315 sum -9.465 -12.766 3.430 16.258 Atomic orbital electron populations 1.21757 0.93920 1.02765 1.01838 1.20054 0.96441 0.88006 1.04091 1.20503 1.07966 0.99984 0.90352 1.22009 0.99116 0.91087 1.01394 1.21706 1.14203 0.98111 0.81152 1.16446 0.77073 0.80514 0.85681 1.90761 1.58692 1.82752 1.13696 1.49694 1.61977 1.11522 1.12900 1.24110 1.01171 0.95508 0.82320 1.19845 0.80479 0.90796 0.90765 1.86028 1.30890 1.81753 1.41214 1.21624 1.37922 0.95168 1.04540 0.90257 1.25828 0.93072 1.01654 0.96294 1.69332 1.36746 1.34442 1.15374 0.85345 0.78775 0.78695 0.77265 1.19075 1.20719 1.19738 1.23453 0.96919 0.81893 0.98956 1.84109 1.65208 1.35695 1.21756 1.23538 0.98627 0.82419 0.98918 1.20440 1.00722 1.02621 0.84481 1.21780 0.95855 1.00688 1.02216 0.93794 0.90223 0.92344 0.88915 0.90269 0.81951 0.88986 0.92640 0.75418 0.91249 0.91976 0.87020 0.89648 0.85476 0.91485 0.94528 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.05 -0.81 5.96 29.85 0.18 -0.64 16 3 C -0.19 -4.84 5.39 -20.06 -0.11 -4.95 16 4 C -0.12 -3.78 10.57 22.39 0.24 -3.54 16 5 C -0.10 -3.99 7.09 24.07 0.17 -3.82 16 6 C 0.61 28.25 8.04 86.44 0.69 28.94 16 7 O -0.58 -28.63 17.64 -4.33 -0.08 -28.71 16 8 N -0.63 -29.28 3.69 -862.97 -3.18 -32.46 16 9 C 0.09 4.25 7.25 83.26 0.60 4.86 16 10 C 0.22 11.12 1.58 -11.11 -0.02 11.10 16 11 O -0.59 -31.90 13.55 -148.98 -2.02 -33.92 16 12 C -0.55 -27.92 8.70 25.60 0.22 -27.70 16 13 H 0.08 3.79 7.81 -2.91 -0.02 3.77 16 14 C 0.03 1.58 5.40 84.65 0.46 2.04 16 15 N -0.92 -46.95 11.01 21.45 0.24 -46.71 16 16 Si 0.97 39.13 29.54 68.60 2.03 41.16 16 17 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 18 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 C 0.11 4.99 8.02 83.18 0.67 5.66 16 21 O -0.17 -6.38 9.25 -5.00 -0.05 -6.43 16 22 C 0.02 0.48 6.57 24.97 0.16 0.65 16 23 C -0.05 -0.85 6.16 29.85 0.18 -0.66 16 24 C -0.15 -2.56 9.89 71.98 0.71 -1.85 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.78 7.71 -2.39 -0.02 0.77 16 28 H 0.09 1.18 8.02 -2.39 -0.02 1.16 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.16 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.09 4.02 8.10 -2.38 -0.02 4.00 16 32 H 0.06 2.68 7.50 -2.38 -0.02 2.67 16 33 H 0.39 21.39 6.32 -74.06 -0.47 20.92 16 34 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 35 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.11 4.50 8.10 -2.39 -0.02 4.48 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.13 1.52 7.43 -2.38 -0.02 1.50 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -63.97 349.02 2.39 -61.59 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.57 Total: 36.74 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.88 Total: 8.74 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.95 Total: -79.17 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -2.14 Total: -69.06 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -63.97 2.39 -61.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193968486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.941 kcal (2) G-P(sol) polarization free energy of solvation -63.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds