Wall clock time and date at job start Tue Mar 31 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 117.00005 * 2 1 4 4 C 1.38566 * 120.07557 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.99899 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.92748 * 180.02562 * 5 4 3 7 7 C 1.38256 * 120.14935 * 0.02562 * 5 4 3 8 8 C 1.38244 * 120.14517 * 359.68200 * 7 5 4 9 9 C 1.38564 * 119.99531 * 0.59041 * 8 7 5 10 10 O 1.35998 * 120.07264 * 179.69609 * 9 8 7 11 11 C 1.42903 * 116.99552 * 359.73619 * 10 9 8 12 12 C 1.50709 * 109.46631 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00080 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99692 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00015 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.46733 * 325.00143 * 15 14 12 17 17 C 1.53000 * 109.47145 * 84.99707 * 15 14 12 18 18 C 1.50694 * 109.47115 * 204.99781 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.08996 * 109.47503 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46824 * 299.99989 * 1 2 3 28 28 H 1.08993 * 109.47258 * 59.99826 * 1 2 3 29 29 H 1.07994 * 119.99729 * 359.96252 * 4 3 2 30 30 H 1.08998 * 109.47475 * 89.99630 * 6 5 4 31 31 H 1.08999 * 109.47285 * 210.00359 * 6 5 4 32 32 H 1.09004 * 109.46980 * 329.99906 * 6 5 4 33 33 H 1.07999 * 119.92945 * 179.97438 * 7 5 4 34 34 H 1.08000 * 120.00103 * 180.32165 * 8 7 5 35 35 H 1.09003 * 109.47496 * 59.99986 * 11 10 9 36 36 H 1.08992 * 109.47046 * 299.99342 * 11 10 9 37 37 H 0.97005 * 120.00104 * 359.97438 * 14 12 11 38 38 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 39 39 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 40 40 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6056 0.0011 6 6 1.1018 4.8696 0.0022 7 6 3.3030 3.6797 0.0005 8 6 4.0604 2.5232 0.0061 9 6 3.4360 1.2863 -0.0001 10 8 4.1795 0.1475 -0.0009 11 6 5.6003 0.3005 -0.0010 12 6 6.2518 -1.0584 -0.0012 13 8 5.5669 -2.0593 -0.0018 14 7 7.5956 -1.1615 -0.0008 15 6 8.2290 -2.4824 -0.0016 16 1 7.6267 -3.1745 0.5870 17 6 8.3366 -2.9955 -1.4390 18 6 9.6070 -2.3791 0.5994 19 1 9.9746 -1.4249 0.9469 20 6 10.3992 -3.5028 0.7048 21 7 9.9519 -4.6648 0.2812 22 14 12.1077 -3.3746 1.4491 23 1 12.7497 -4.7137 1.4484 24 1 12.9276 -2.4316 0.6470 25 1 12.0037 -2.8768 2.8443 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2147 2.3196 0.0003 30 1 0.9043 5.1737 1.0301 31 1 1.6501 5.6593 -0.5114 32 1 0.1572 4.6899 -0.5114 33 1 3.7909 4.6432 0.0005 34 1 5.1387 2.5838 0.0109 35 1 5.9067 0.8498 0.8893 36 1 5.9064 0.8507 -0.8906 37 1 8.1435 -0.3609 -0.0007 38 1 8.8075 -3.9786 -1.4396 39 1 7.3398 -3.0702 -1.8738 40 1 8.9388 -2.3035 -2.0277 41 1 10.5093 -5.4552 0.3550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194665905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:34 Heat of formation + Delta-G solvation = -89.203617 kcal Electronic energy + Delta-G solvation = -22844.495713 eV Core-core repulsion = 19304.327021 eV Total energy + Delta-G solvation = -3540.168693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67270 -39.14977 -38.03414 -37.18221 -34.76059 -32.43186 -32.08229 -30.50540 -29.62646 -28.08303 -27.31143 -25.95780 -25.24808 -22.62640 -21.67937 -20.96354 -19.48900 -18.53766 -17.41232 -17.16826 -16.39505 -16.28168 -15.57723 -15.49636 -15.23644 -14.77341 -14.53009 -14.20750 -13.96930 -13.88522 -13.60744 -13.24483 -12.71791 -12.44086 -12.32872 -12.26931 -12.01928 -11.69221 -11.36067 -11.26103 -11.19238 -11.09195 -10.95955 -10.81905 -10.68254 -10.33115 -10.23558 -9.07224 -9.02856 -8.83286 -8.55791 -7.95709 -7.79368 -6.12594 -4.22412 1.14150 1.30358 2.95686 3.20335 3.25373 3.29342 3.31044 3.32634 3.56077 4.18774 4.38422 4.56118 4.70071 4.83248 4.91810 5.00456 5.02557 5.12664 5.19222 5.25252 5.27433 5.34021 5.35723 5.37553 5.44921 5.50082 5.69850 6.01136 6.11641 6.39964 6.55703 6.82143 6.96430 7.01756 7.14314 7.42332 7.50042 7.59245 7.68768 7.90662 8.14079 8.60794 8.76447 9.07307 9.44803 10.93394 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.002859 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.628059 B = 9792.392402 C =10483.647287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.104 3.896 4 C -0.174 4.174 5 C -0.092 4.092 6 C -0.108 4.108 7 C -0.117 4.117 8 C -0.173 4.173 9 C 0.102 3.898 10 O -0.275 6.275 11 C 0.038 3.962 12 C 0.503 3.497 13 O -0.529 6.529 14 N -0.706 5.706 15 C 0.266 3.734 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.535 4.535 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.389 0.611 38 H 0.091 0.909 39 H 0.015 0.985 40 H 0.027 0.973 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.847 18.327 -1.222 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.058 3.942 4 C -0.193 4.193 5 C -0.093 4.093 6 C -0.165 4.165 7 C -0.135 4.135 8 C -0.192 4.192 9 C 0.055 3.945 10 O -0.187 6.187 11 C -0.041 4.041 12 C 0.286 3.714 13 O -0.405 6.405 14 N -0.356 5.356 15 C 0.165 3.835 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.574 4.574 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.222 0.778 38 H 0.110 0.890 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.259 16.949 -1.238 23.519 hybrid contribution 1.185 0.763 0.369 1.456 sum -15.074 17.712 -0.869 23.274 Atomic orbital electron populations 1.23058 0.78859 1.04057 1.00847 1.86287 1.20737 1.25578 1.88689 1.18261 0.89150 0.85313 1.01486 1.20888 0.99675 0.90952 1.07806 1.19568 0.93893 0.94462 1.01348 1.20717 0.99135 0.94467 1.02178 1.20712 0.92930 0.97823 1.02018 1.21117 1.00605 0.91010 1.06451 1.18385 0.88507 0.86309 1.01260 1.86311 1.16963 1.27167 1.88305 1.22662 0.80108 0.98339 1.02987 1.19848 0.83628 0.89441 0.78518 1.90716 1.62895 1.37862 1.49047 1.46417 1.04369 1.11976 1.72833 1.18777 0.92298 0.78274 0.94122 0.93221 1.22093 0.97799 1.03501 0.97295 1.21166 0.99338 0.95223 1.41659 0.92046 1.24897 0.98604 0.95073 0.95150 1.69897 1.37254 0.99193 1.45658 0.86484 0.83508 0.77295 0.79650 1.21112 1.20153 1.20165 0.88150 0.92894 0.92895 0.84935 0.91318 0.91519 0.91804 0.85651 0.84541 0.89568 0.89624 0.77841 0.89038 0.96542 0.95389 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.48 10.28 -34.21 -0.35 -4.83 16 3 C 0.10 1.47 6.70 -39.12 -0.26 1.21 16 4 C -0.17 -1.90 8.69 -39.46 -0.34 -2.24 16 5 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 6 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 7 C -0.12 -1.17 9.69 -39.57 -0.38 -1.56 16 8 C -0.17 -2.04 9.04 -39.46 -0.36 -2.39 16 9 C 0.10 1.53 6.70 -39.12 -0.26 1.27 16 10 O -0.28 -4.98 9.45 -47.36 -0.45 -5.43 16 11 C 0.04 0.59 5.22 36.01 0.19 0.78 16 12 C 0.50 10.49 7.87 -10.98 -0.09 10.40 16 13 O -0.53 -13.70 16.16 -14.35 -0.23 -13.93 16 14 N -0.71 -14.71 5.07 -54.93 -0.28 -14.99 16 15 C 0.27 6.85 2.56 -69.09 -0.18 6.68 16 16 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 17 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 18 C -0.54 -14.17 8.73 -34.44 -0.30 -14.47 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -25.00 11.32 55.43 0.63 -24.37 16 22 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.09 1.09 7.65 -51.93 -0.40 0.69 16 36 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 37 H 0.39 6.71 8.54 -40.82 -0.35 6.36 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -34.20 346.88 -7.28 -41.47 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.80 Total: 3.94 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.00 Total: -2.67 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.35 Total: -39.36 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.03 Total: -24.19 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.20 -7.28 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194665905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.730 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds