Wall clock time and date at job start Tue Mar 31 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 117.00005 * 2 1 4 4 C 1.38566 * 120.07557 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.99899 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.92748 * 180.02562 * 5 4 3 7 7 C 1.38256 * 120.14935 * 0.02562 * 5 4 3 8 8 C 1.38244 * 120.14517 * 359.68200 * 7 5 4 9 9 C 1.38564 * 119.99531 * 0.59041 * 8 7 5 10 10 O 1.35998 * 120.07264 * 179.69609 * 9 8 7 11 11 C 1.42903 * 116.99552 * 359.73619 * 10 9 8 12 12 C 1.50709 * 109.46631 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00080 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99692 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00015 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.46733 * 325.00143 * 15 14 12 17 17 C 1.53000 * 109.47145 * 84.99707 * 15 14 12 18 18 C 1.50694 * 109.47115 * 204.99781 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.08996 * 109.47503 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46824 * 299.99989 * 1 2 3 28 28 H 1.08993 * 109.47258 * 59.99826 * 1 2 3 29 29 H 1.07994 * 119.99729 * 359.96252 * 4 3 2 30 30 H 1.08998 * 109.47475 * 89.99630 * 6 5 4 31 31 H 1.08999 * 109.47285 * 210.00359 * 6 5 4 32 32 H 1.09004 * 109.46980 * 329.99906 * 6 5 4 33 33 H 1.07999 * 119.92945 * 179.97438 * 7 5 4 34 34 H 1.08000 * 120.00103 * 180.32165 * 8 7 5 35 35 H 1.09003 * 109.47496 * 59.99986 * 11 10 9 36 36 H 1.08992 * 109.47046 * 299.99342 * 11 10 9 37 37 H 0.97005 * 120.00104 * 359.97438 * 14 12 11 38 38 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 39 39 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 40 40 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6056 0.0011 6 6 1.1018 4.8696 0.0022 7 6 3.3030 3.6797 0.0005 8 6 4.0604 2.5232 0.0061 9 6 3.4360 1.2863 -0.0001 10 8 4.1795 0.1475 -0.0009 11 6 5.6003 0.3005 -0.0010 12 6 6.2518 -1.0584 -0.0012 13 8 5.5669 -2.0593 -0.0018 14 7 7.5956 -1.1615 -0.0008 15 6 8.2290 -2.4824 -0.0016 16 1 7.6267 -3.1745 0.5870 17 6 8.3366 -2.9955 -1.4390 18 6 9.6070 -2.3791 0.5994 19 1 9.9746 -1.4249 0.9469 20 6 10.3992 -3.5028 0.7048 21 7 9.9519 -4.6648 0.2812 22 14 12.1077 -3.3746 1.4491 23 1 12.7497 -4.7137 1.4484 24 1 12.9276 -2.4316 0.6470 25 1 12.0037 -2.8768 2.8443 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2147 2.3196 0.0003 30 1 0.9043 5.1737 1.0301 31 1 1.6501 5.6593 -0.5114 32 1 0.1572 4.6899 -0.5114 33 1 3.7909 4.6432 0.0005 34 1 5.1387 2.5838 0.0109 35 1 5.9067 0.8498 0.8893 36 1 5.9064 0.8507 -0.8906 37 1 8.1435 -0.3609 -0.0007 38 1 8.8075 -3.9786 -1.4396 39 1 7.3398 -3.0702 -1.8738 40 1 8.9388 -2.3035 -2.0277 41 1 10.5093 -5.4552 0.3550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194665905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:34 Heat of formation + Delta-G solvation = -112.066317 kcal Electronic energy + Delta-G solvation = -22845.487114 eV Core-core repulsion = 19304.327021 eV Total energy + Delta-G solvation = -3541.160094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.65113 -40.63864 -39.25199 -38.12900 -36.70758 -34.38621 -32.90278 -31.63735 -31.11595 -29.17226 -28.37698 -27.34660 -26.74933 -23.76849 -22.87208 -22.26181 -21.26682 -19.59156 -19.05170 -18.07864 -17.72659 -17.43600 -17.13341 -17.02399 -16.55266 -16.08189 -15.59717 -15.35163 -15.17635 -15.00112 -14.55540 -14.44415 -14.35075 -13.82886 -13.68521 -13.19536 -13.03607 -12.98541 -12.86079 -12.75140 -12.70556 -12.28276 -12.22083 -12.15102 -12.09426 -12.00749 -11.64951 -11.13944 -10.79646 -10.58851 -9.83910 -9.66375 -8.73118 -8.17765 -6.36109 0.30295 0.43904 1.45608 1.48472 1.56018 1.66437 1.73002 2.40114 2.41038 2.71800 2.86779 3.12770 3.72319 3.83934 3.96389 4.03298 4.12990 4.14259 4.26259 4.36701 4.37381 4.43835 4.66218 4.69153 4.73137 4.85374 4.89996 4.91507 5.06728 5.11663 5.29081 5.30615 5.39723 5.56841 5.63406 5.64872 5.80320 5.87238 6.06881 6.10011 6.62616 6.70759 6.88700 7.30342 7.48317 8.88728 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.002859 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.628059 B = 9792.392402 C =10483.647287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.076 3.924 4 C -0.174 4.174 5 C -0.089 4.089 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.169 4.169 9 C 0.059 3.941 10 O -0.318 6.318 11 C 0.051 3.949 12 C 0.497 3.503 13 O -0.590 6.590 14 N -0.696 5.696 15 C 0.271 3.729 16 H -0.004 1.004 17 C -0.135 4.135 18 C -0.547 4.547 19 H 0.079 0.921 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.976 3.024 23 H -0.288 1.288 24 H -0.261 1.261 25 H -0.270 1.270 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.411 0.589 38 H 0.067 0.933 39 H 0.009 0.991 40 H 0.045 0.955 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.452 22.289 -1.000 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.031 3.969 4 C -0.193 4.193 5 C -0.089 4.089 6 C -0.164 4.164 7 C -0.136 4.136 8 C -0.188 4.188 9 C 0.014 3.986 10 O -0.232 6.232 11 C -0.027 4.027 12 C 0.283 3.717 13 O -0.470 6.470 14 N -0.347 5.347 15 C 0.168 3.832 16 H 0.014 0.986 17 C -0.194 4.194 18 C -0.585 4.585 19 H 0.097 0.903 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.186 1.186 25 H -0.195 1.195 26 H 0.125 0.875 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.174 0.826 34 H 0.175 0.825 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.247 0.753 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.064 0.936 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.865 20.986 -1.020 26.327 hybrid contribution 0.920 -0.404 0.297 1.048 sum -14.945 20.582 -0.723 25.446 Atomic orbital electron populations 1.23315 0.76634 1.05140 1.02408 1.86217 1.23369 1.26925 1.89175 1.18701 0.89489 0.86014 1.02721 1.21188 1.00714 0.90372 1.07019 1.20065 0.94446 0.95285 0.99096 1.20798 0.99263 0.93048 1.03267 1.21140 0.93178 0.98508 1.00784 1.21412 1.01840 0.90246 1.05293 1.18810 0.88868 0.86485 1.04396 1.86226 1.17824 1.29633 1.89532 1.22579 0.79491 0.94398 1.06211 1.20835 0.83163 0.91194 0.76523 1.90684 1.64130 1.40645 1.51553 1.46093 1.04957 1.11102 1.72572 1.18381 0.91791 0.79676 0.93372 0.98637 1.21919 0.97356 1.02689 0.97439 1.21515 0.99361 0.96065 1.41604 0.90306 1.25865 1.02870 0.94607 0.95461 1.70063 1.38847 1.00017 1.46831 0.85332 0.78328 0.77313 0.78964 1.21354 1.18575 1.19516 0.87490 0.91270 0.91222 0.82749 0.90174 0.90044 0.90763 0.82558 0.82476 0.86206 0.86005 0.75327 0.91380 0.97234 0.93563 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -10.68 10.28 -79.55 -0.82 -11.49 16 3 C 0.08 2.17 6.70 22.57 0.15 2.32 16 4 C -0.17 -3.51 8.69 22.35 0.19 -3.32 16 5 C -0.09 -1.47 5.88 -19.86 -0.12 -1.59 16 6 C -0.11 -0.99 10.01 71.24 0.71 -0.28 16 7 C -0.12 -1.98 9.69 22.28 0.22 -1.76 16 8 C -0.17 -3.61 9.04 22.35 0.20 -3.40 16 9 C 0.06 1.78 6.70 22.57 0.15 1.93 16 10 O -0.32 -11.77 9.45 -67.11 -0.63 -12.41 16 11 C 0.05 1.53 5.22 71.24 0.37 1.91 16 12 C 0.50 21.15 7.87 87.66 0.69 21.84 16 13 O -0.59 -32.33 16.16 16.01 0.26 -32.07 16 14 N -0.70 -29.05 5.07 -446.10 -2.26 -31.31 16 15 C 0.27 14.35 2.56 44.24 0.11 14.46 16 16 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 17 C -0.14 -7.02 9.26 71.98 0.67 -6.36 16 18 C -0.55 -28.93 8.73 25.60 0.22 -28.71 16 19 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 20 C 0.01 0.64 5.30 84.66 0.45 1.09 16 21 N -0.92 -53.44 11.32 21.45 0.24 -53.19 16 22 Si 0.98 41.84 29.54 68.60 2.03 43.86 16 23 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.00 7.66 -2.38 -0.02 0.99 16 28 H 0.07 1.00 7.66 -2.39 -0.02 0.99 16 29 H 0.16 2.24 6.30 -2.91 -0.02 2.22 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.07 0.56 8.08 -2.38 -0.02 0.54 16 33 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.16 2.49 6.30 -2.91 -0.02 2.47 16 35 H 0.12 2.74 7.65 -2.39 -0.02 2.72 16 36 H 0.12 2.72 7.67 -2.39 -0.02 2.70 16 37 H 0.41 13.47 8.54 -92.70 -0.79 12.68 16 38 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 39 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -79.68 346.88 4.21 -75.47 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.25 Total: 21.52 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.14 Total: -0.39 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.02 Total: -84.50 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -1.19 Total: -55.97 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -79.68 4.21 -75.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194665905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.592 kcal (2) G-P(sol) polarization free energy of solvation -79.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds