Wall clock time and date at job start Tue Mar 31 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35991 * 116.99952 * 2 1 4 4 C 1.38570 * 120.07585 * 0.02615 * 3 2 1 5 5 C 1.38239 * 120.00212 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.92760 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.14738 * 0.02725 * 5 4 3 8 8 C 1.38253 * 120.14362 * 359.67637 * 7 5 4 9 9 C 1.38562 * 119.99834 * 0.59769 * 8 7 5 10 10 O 1.35991 * 120.07127 * 179.70329 * 9 8 7 11 11 C 1.42898 * 117.00143 * 359.72084 * 10 9 8 12 12 C 1.50703 * 109.47171 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.47129 * 34.99449 * 15 14 12 17 17 C 1.53002 * 109.46916 * 274.99861 * 15 14 12 18 18 C 1.50699 * 109.47179 * 154.99781 * 15 14 12 19 19 H 1.07996 * 120.00063 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99979 * 180.02562 * 18 15 14 21 21 N 1.31518 * 119.99584 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00089 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.46902 * 89.99661 * 22 20 18 24 24 H 1.48490 * 109.46941 * 209.99634 * 22 20 18 25 25 H 1.48503 * 109.46825 * 329.99720 * 22 20 18 26 26 H 1.08999 * 109.47242 * 59.99302 * 1 2 3 27 27 H 1.09002 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46970 * 299.99282 * 1 2 3 29 29 H 1.07996 * 119.99740 * 359.95916 * 4 3 2 30 30 H 1.09005 * 109.46941 * 90.00402 * 6 5 4 31 31 H 1.09006 * 109.47313 * 210.00334 * 6 5 4 32 32 H 1.09001 * 109.47300 * 330.00241 * 6 5 4 33 33 H 1.07998 * 119.93023 * 179.97438 * 7 5 4 34 34 H 1.07998 * 119.99808 * 180.31933 * 8 7 5 35 35 H 1.09002 * 109.47259 * 300.00512 * 11 10 9 36 36 H 1.09001 * 109.47074 * 60.00533 * 11 10 9 37 37 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 38 38 H 1.08991 * 109.47341 * 59.99644 * 17 15 14 39 39 H 1.09000 * 109.46953 * 179.97438 * 17 15 14 40 40 H 1.09005 * 109.46885 * 299.99737 * 17 15 14 41 41 H 0.97007 * 119.99216 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 1.1016 4.8696 0.0023 7 6 3.3029 3.6799 0.0005 8 6 4.0603 2.5233 0.0061 9 6 3.4359 1.2863 -0.0001 10 8 4.1795 0.1477 -0.0007 11 6 5.6003 0.3007 -0.0008 12 6 6.2519 -1.0582 -0.0021 13 8 5.5670 -2.0591 -0.0024 14 7 7.5957 -1.1612 -0.0019 15 6 8.2291 -2.4822 -0.0037 16 1 7.6272 -3.1729 -0.5943 17 6 8.3359 -2.9985 1.4326 18 6 9.6075 -2.3775 -0.6037 19 1 9.9748 -1.4226 -0.9495 20 6 10.3993 -3.5010 -0.7121 21 7 9.9517 -4.6640 -0.2914 22 14 12.1077 -3.3715 -1.4565 23 1 13.0941 -3.0833 -0.3845 24 1 12.4573 -4.6534 -2.1194 25 1 12.1296 -2.2745 -2.4573 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2146 2.3197 0.0003 30 1 0.9042 5.1737 1.0303 31 1 1.6499 5.6594 -0.5114 32 1 0.1571 4.6899 -0.5112 33 1 3.7908 4.6434 0.0005 34 1 5.1385 2.5840 0.0109 35 1 5.9064 0.8509 -0.8906 36 1 5.9066 0.8500 0.8894 37 1 8.1434 -0.3606 -0.0013 38 1 7.3389 -3.0742 1.8666 39 1 8.8067 -3.9815 1.4312 40 1 8.9377 -2.3077 2.0232 41 1 10.5090 -5.4544 -0.3674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194665921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:36 Heat of formation + Delta-G solvation = -89.263329 kcal Electronic energy + Delta-G solvation = -22844.599767 eV Core-core repulsion = 19304.428485 eV Total energy + Delta-G solvation = -3540.171282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67271 -39.15039 -38.03478 -37.18253 -34.76108 -32.43237 -32.08260 -30.50501 -29.62716 -28.08290 -27.31164 -25.95773 -25.25012 -22.62657 -21.67949 -20.96410 -19.48895 -18.53790 -17.41343 -17.16858 -16.39456 -16.28275 -15.57937 -15.49730 -15.23846 -14.77197 -14.52961 -14.20293 -13.97905 -13.88292 -13.60046 -13.24669 -12.71908 -12.44466 -12.33215 -12.26528 -12.01986 -11.69666 -11.36049 -11.26161 -11.19003 -11.10473 -10.94998 -10.81134 -10.68356 -10.32769 -10.24074 -9.06262 -9.02779 -8.83262 -8.56532 -7.95669 -7.79363 -6.12881 -4.22561 1.14139 1.30346 2.95647 3.20347 3.24037 3.29360 3.31405 3.33643 3.56054 4.18788 4.38306 4.56129 4.70085 4.83246 4.91792 5.00451 5.02543 5.12651 5.19103 5.25220 5.27421 5.33993 5.35684 5.37514 5.44916 5.50082 5.69828 6.01137 6.11631 6.39960 6.55701 6.82079 6.96476 7.01771 7.14267 7.42305 7.50044 7.59346 7.68718 7.90617 8.13937 8.60760 8.76490 9.07307 9.44731 10.93143 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.002859 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.793807 B = 9792.089392 C =10483.503576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.104 3.896 4 C -0.174 4.174 5 C -0.092 4.092 6 C -0.108 4.108 7 C -0.116 4.116 8 C -0.173 4.173 9 C 0.102 3.898 10 O -0.275 6.275 11 C 0.038 3.962 12 C 0.503 3.497 13 O -0.529 6.529 14 N -0.706 5.706 15 C 0.266 3.734 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.535 4.535 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.389 0.611 38 H 0.016 0.984 39 H 0.091 0.909 40 H 0.027 0.973 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 18.338 1.283 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.058 3.942 4 C -0.193 4.193 5 C -0.093 4.093 6 C -0.165 4.165 7 C -0.135 4.135 8 C -0.192 4.192 9 C 0.055 3.945 10 O -0.187 6.187 11 C -0.041 4.041 12 C 0.286 3.714 13 O -0.405 6.405 14 N -0.356 5.356 15 C 0.165 3.835 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.573 4.573 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.222 0.778 38 H 0.035 0.965 39 H 0.110 0.890 40 H 0.046 0.954 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.267 16.964 1.292 23.539 hybrid contribution 1.186 0.752 -0.349 1.447 sum -15.081 17.716 0.943 23.285 Atomic orbital electron populations 1.23060 0.78860 1.04056 1.00846 1.86286 1.20737 1.25577 1.88690 1.18263 0.89148 0.85312 1.01490 1.20890 0.99674 0.90952 1.07802 1.19567 0.93894 0.94462 1.01352 1.20717 0.99141 0.94470 1.02169 1.20714 0.92929 0.97823 1.02015 1.21119 1.00604 0.91010 1.06453 1.18383 0.88506 0.86307 1.01258 1.86308 1.16963 1.27174 1.88302 1.22661 0.80107 0.98338 1.02988 1.19847 0.83630 0.89441 0.78519 1.90715 1.62901 1.37859 1.49044 1.46417 1.04369 1.11974 1.72835 1.18784 0.92314 0.78271 0.94136 0.93220 1.22092 0.97801 1.03496 0.97295 1.21201 0.99299 0.95196 1.41606 0.91995 1.24900 0.98613 0.95069 0.95174 1.69912 1.37116 0.99146 1.45822 0.86424 0.83684 0.77609 0.79235 1.20537 1.21053 1.19844 0.92893 0.88150 0.92896 0.84935 0.91323 0.91517 0.91800 0.85650 0.84542 0.89564 0.89629 0.77840 0.96538 0.89044 0.95389 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.48 10.28 -34.21 -0.35 -4.83 16 3 C 0.10 1.47 6.70 -39.12 -0.26 1.21 16 4 C -0.17 -1.90 8.69 -39.46 -0.34 -2.24 16 5 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 6 C -0.11 -0.72 10.01 36.00 0.36 -0.36 16 7 C -0.12 -1.17 9.69 -39.57 -0.38 -1.56 16 8 C -0.17 -2.04 9.04 -39.46 -0.36 -2.40 16 9 C 0.10 1.53 6.70 -39.12 -0.26 1.27 16 10 O -0.28 -4.98 9.45 -47.34 -0.45 -5.43 16 11 C 0.04 0.59 5.22 36.01 0.19 0.78 16 12 C 0.50 10.49 7.87 -10.98 -0.09 10.40 16 13 O -0.53 -13.69 16.16 -14.35 -0.23 -13.93 16 14 N -0.71 -14.71 5.07 -54.93 -0.28 -14.99 16 15 C 0.27 6.84 2.56 -69.08 -0.18 6.67 16 16 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 17 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 18 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -24.99 11.32 55.43 0.63 -24.37 16 22 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.40 7.66 -51.92 -0.40 0.00 16 29 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 36 H 0.09 1.06 7.65 -51.93 -0.40 0.66 16 37 H 0.39 6.71 8.54 -40.82 -0.35 6.36 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -34.22 346.89 -7.28 -41.49 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.80 Total: 3.91 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.00 Total: -2.66 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.35 Total: -39.35 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.03 Total: -24.18 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.22 -7.28 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194665921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.770 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds