Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35790 * 119.37550 * 2 1 4 4 C 1.39427 * 120.13817 * 180.28750 * 3 2 1 5 5 C 1.39428 * 118.95051 * 359.43681 * 4 3 2 6 6 C 1.46918 * 120.59679 * 180.29890 * 5 4 3 7 7 O 1.21568 * 119.99399 * 0.02562 * 6 5 4 8 8 O 1.34821 * 120.00134 * 180.02562 * 6 5 4 9 9 C 1.45200 * 117.00157 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47169 * 179.97438 * 9 8 6 11 11 C 1.52990 * 109.47148 * 299.99850 * 10 9 8 12 12 C 1.53003 * 109.46844 * 60.00006 * 10 9 8 13 13 C 1.52999 * 109.46652 * 179.97438 * 10 9 8 14 14 C 1.50705 * 109.46789 * 180.02562 * 13 10 9 15 15 H 1.08000 * 120.00113 * 0.02562 * 14 13 10 16 16 C 1.37872 * 119.99920 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00100 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00245 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46959 * 89.99632 * 18 16 14 20 20 H 1.48496 * 109.47071 * 209.99846 * 18 16 14 21 21 H 1.48503 * 109.46834 * 329.99301 * 18 16 14 22 22 C 1.41946 * 118.81246 * 0.27633 * 5 4 3 23 23 O 1.21872 * 120.10989 * 179.97438 * 22 5 4 24 24 N 1.34662 * 119.78473 * 0.02562 * 22 5 4 25 25 H 0.96991 * 119.46585 * 180.02562 * 24 22 5 26 26 H 1.09001 * 109.47232 * 270.28510 * 1 2 3 27 27 H 1.09006 * 109.47216 * 30.28047 * 1 2 3 28 28 H 1.08997 * 109.47566 * 150.28711 * 1 2 3 29 29 H 1.08006 * 119.93285 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.52902 * 179.71708 * 4 3 2 31 31 H 1.09005 * 109.46752 * 300.00181 * 9 8 6 32 32 H 1.08998 * 109.47210 * 59.99250 * 9 8 6 33 33 H 1.09000 * 109.47620 * 60.00269 * 11 10 9 34 34 H 1.09001 * 109.47037 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47373 * 299.99685 * 11 10 9 36 36 H 1.08999 * 109.47628 * 59.99659 * 12 10 9 37 37 H 1.09001 * 109.46509 * 179.97438 * 12 10 9 38 38 H 1.08995 * 109.46882 * 299.99644 * 12 10 9 39 39 H 1.08999 * 109.47578 * 299.99654 * 13 10 9 40 40 H 1.08992 * 109.47478 * 60.00365 * 13 10 9 41 41 H 0.97000 * 120.00545 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1833 0.0000 4 6 3.5672 1.2019 -0.0061 5 6 4.2584 -0.0090 -0.0001 6 6 5.7274 -0.0317 0.0005 7 8 6.3512 1.0117 -0.0039 8 8 6.3835 -1.2094 0.0058 9 6 7.8345 -1.1558 0.0065 10 6 8.3974 -2.5784 0.0134 11 6 7.9136 -3.3123 1.2656 12 6 7.9153 -3.3237 -1.2328 13 6 9.9264 -2.5217 0.0136 14 6 10.4810 -3.9230 0.0198 15 1 9.8100 -4.7693 0.0228 16 6 11.8449 -4.1246 0.0205 17 7 12.3288 -5.3475 0.0263 18 14 13.0055 -2.6609 0.0145 19 1 13.3130 -2.2674 1.4130 20 1 14.2630 -3.0291 -0.6841 21 1 12.3629 -1.5226 -0.6902 22 6 3.5173 -1.2197 0.0060 23 8 4.0973 -2.2915 0.0108 24 7 2.1713 -1.1800 0.0054 25 1 1.6695 -2.0100 0.0099 26 1 -0.3634 0.0051 1.0277 27 1 -0.3634 0.8875 -0.5182 28 1 -0.3634 -0.8925 -0.5093 29 1 1.6218 2.1121 0.0004 30 1 4.1034 2.1394 -0.0107 31 1 8.1791 -0.6325 -0.8854 32 1 8.1780 -0.6251 0.8945 33 1 6.8244 -3.3527 1.2651 34 1 8.3151 -4.3256 1.2707 35 1 8.2572 -2.7814 2.1535 36 1 8.2599 -2.8008 -2.1250 37 1 8.3168 -4.3370 -1.2281 38 1 6.8261 -3.3640 -1.2333 39 1 10.2708 -1.9991 -0.8788 40 1 10.2702 -1.9907 0.9011 41 1 13.2884 -5.4894 0.0272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195044660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = -106.810449 kcal Electronic energy + Delta-G solvation = -23504.799116 eV Core-core repulsion = 19963.866934 eV Total energy + Delta-G solvation = -3540.932182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63203 -39.77562 -37.53753 -37.10920 -35.21266 -34.05031 -32.19235 -32.08954 -28.72612 -27.72208 -26.23466 -26.21028 -24.15454 -23.61380 -22.44509 -21.21051 -18.72912 -18.10088 -17.86693 -16.74129 -16.43095 -16.34495 -16.26668 -15.86014 -15.58777 -14.65575 -14.10084 -14.08522 -13.67122 -13.57098 -13.56863 -13.05027 -12.78020 -12.53287 -12.37939 -12.22038 -12.06564 -11.93185 -11.19494 -10.87537 -10.86361 -10.76319 -10.54217 -10.43206 -10.22346 -10.15389 -10.12704 -9.70325 -9.59727 -9.35683 -8.86755 -8.44899 -8.37415 -5.95090 -3.91501 -0.00127 1.49049 2.39658 2.48839 3.09156 3.37562 3.44775 3.49538 3.50452 3.76771 4.21671 4.36136 4.53346 4.70026 4.75690 4.80130 4.95001 5.12514 5.37507 5.46899 5.58485 5.60007 5.63516 5.73277 5.90201 6.16062 6.20337 6.29389 6.46789 6.49501 6.74096 6.76458 6.87246 6.92269 7.16189 7.23186 7.25172 7.38340 7.49757 7.76898 7.86950 8.11400 8.64467 9.10767 9.67334 11.17827 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036073 B = 0.003270 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.015965 B = 8561.118115 C = 9135.467284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.203 3.797 3 C -0.254 4.254 4 C 0.070 3.930 5 C -0.264 4.264 6 C 0.521 3.479 7 O -0.525 6.525 8 O -0.316 6.316 9 C 0.074 3.926 10 C -0.046 4.046 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.004 4.004 14 C -0.505 4.505 15 H 0.080 0.920 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.528 3.472 23 O -0.497 6.497 24 N -0.604 5.604 25 H 0.417 0.583 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.017 0.983 40 H 0.013 0.987 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.301 14.111 -0.060 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.090 3.910 3 C -0.277 4.277 4 C 0.048 3.952 5 C -0.269 4.269 6 C 0.367 3.633 7 O -0.418 6.418 8 O -0.231 6.231 9 C 0.001 3.999 10 C -0.046 4.046 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.041 4.041 14 C -0.543 4.543 15 H 0.098 0.902 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C 0.326 3.674 23 O -0.373 6.373 24 N -0.237 5.237 25 H 0.256 0.744 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.031 0.969 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.377 13.667 -0.064 30.598 hybrid contribution 0.665 0.648 0.021 0.928 sum -26.712 14.314 -0.043 30.306 Atomic orbital electron populations 1.21219 0.87643 1.05368 1.04811 1.20870 0.95251 0.86106 0.88786 1.20397 0.93781 0.97234 1.16266 1.22025 0.93692 0.98016 0.81510 1.20146 0.91790 0.93526 1.21450 1.20211 0.87582 0.82563 0.72949 1.90827 1.68958 1.33947 1.48036 1.86802 1.22929 1.31066 1.82291 1.23493 0.74805 1.00119 1.01503 1.20521 0.96925 0.90328 0.96854 1.21714 0.99474 1.01456 0.95776 1.21713 0.99467 1.01411 0.95810 1.19635 0.89480 0.98619 0.96357 1.21076 0.92074 0.91280 1.49904 0.90202 1.24990 0.98240 0.95368 0.94889 1.69905 1.12868 1.20008 1.51669 0.86862 0.80578 0.83899 0.78468 1.20385 1.21499 1.19044 1.16965 0.80539 0.90836 0.79099 1.91113 1.66748 1.30396 1.49054 1.43765 1.09148 1.09188 1.61565 0.74426 0.88560 0.88383 0.89948 0.82789 0.83138 0.91851 0.91865 0.93423 0.91294 0.94142 0.94134 0.91291 0.93425 0.96443 0.96893 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.06 10.06 36.01 0.36 0.30 16 2 C 0.20 0.95 6.80 -81.89 -0.56 0.39 16 3 C -0.25 -1.36 9.58 -40.02 -0.38 -1.74 16 4 C 0.07 0.64 9.70 -38.70 -0.38 0.26 16 5 C -0.26 -3.58 5.92 -104.52 -0.62 -4.20 16 6 C 0.52 9.23 7.88 34.24 0.27 9.50 16 7 O -0.53 -9.94 16.18 -19.32 -0.31 -10.26 16 8 O -0.32 -6.25 7.08 -48.03 -0.34 -6.59 16 9 C 0.07 1.51 4.33 37.16 0.16 1.67 16 10 C -0.05 -1.02 0.61 -154.51 -0.09 -1.11 16 11 C -0.13 -2.74 8.08 37.15 0.30 -2.44 16 12 C -0.13 -2.74 8.08 37.16 0.30 -2.44 16 13 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 14 C -0.51 -14.52 8.20 -34.44 -0.28 -14.80 16 15 H 0.08 2.44 5.92 -52.49 -0.31 2.13 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 18 Si 0.87 22.42 27.47 -169.99 -4.67 17.75 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 22 C 0.53 6.97 7.73 -14.89 -0.12 6.86 16 23 O -0.50 -8.78 16.05 -16.43 -0.26 -9.04 16 24 N -0.60 -4.56 5.22 -10.88 -0.06 -4.62 16 25 H 0.42 2.15 8.74 -40.82 -0.36 1.79 16 26 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 27 H 0.10 -0.08 8.07 -51.93 -0.42 -0.50 16 28 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 30 H 0.15 1.24 7.69 -52.49 -0.40 0.84 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.99 7.68 -51.93 -0.40 0.59 16 34 H 0.07 1.59 6.62 -51.93 -0.34 1.24 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.59 6.61 -51.93 -0.34 1.24 16 38 H 0.05 0.99 7.68 -51.93 -0.40 0.59 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -37.51 341.24 -6.81 -44.32 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.87 Total: -3.02 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.22 Total: -6.09 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.72 Total: -32.22 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.92 Total: -25.89 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.51 -6.81 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.489 kcal (2) G-P(sol) polarization free energy of solvation -37.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds