Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35790 * 119.37550 * 2 1 4 4 C 1.39427 * 120.13817 * 180.28750 * 3 2 1 5 5 C 1.39428 * 118.95051 * 359.43681 * 4 3 2 6 6 C 1.46918 * 120.59679 * 180.29890 * 5 4 3 7 7 O 1.21568 * 119.99399 * 0.02562 * 6 5 4 8 8 O 1.34821 * 120.00134 * 180.02562 * 6 5 4 9 9 C 1.45200 * 117.00157 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47169 * 179.97438 * 9 8 6 11 11 C 1.52990 * 109.47148 * 299.99850 * 10 9 8 12 12 C 1.53003 * 109.46844 * 60.00006 * 10 9 8 13 13 C 1.52999 * 109.46652 * 179.97438 * 10 9 8 14 14 C 1.50705 * 109.46789 * 180.02562 * 13 10 9 15 15 H 1.08000 * 120.00113 * 0.02562 * 14 13 10 16 16 C 1.37872 * 119.99920 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00100 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00245 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46959 * 89.99632 * 18 16 14 20 20 H 1.48496 * 109.47071 * 209.99846 * 18 16 14 21 21 H 1.48503 * 109.46834 * 329.99301 * 18 16 14 22 22 C 1.41946 * 118.81246 * 0.27633 * 5 4 3 23 23 O 1.21872 * 120.10989 * 179.97438 * 22 5 4 24 24 N 1.34662 * 119.78473 * 0.02562 * 22 5 4 25 25 H 0.96991 * 119.46585 * 180.02562 * 24 22 5 26 26 H 1.09001 * 109.47232 * 270.28510 * 1 2 3 27 27 H 1.09006 * 109.47216 * 30.28047 * 1 2 3 28 28 H 1.08997 * 109.47566 * 150.28711 * 1 2 3 29 29 H 1.08006 * 119.93285 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.52902 * 179.71708 * 4 3 2 31 31 H 1.09005 * 109.46752 * 300.00181 * 9 8 6 32 32 H 1.08998 * 109.47210 * 59.99250 * 9 8 6 33 33 H 1.09000 * 109.47620 * 60.00269 * 11 10 9 34 34 H 1.09001 * 109.47037 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47373 * 299.99685 * 11 10 9 36 36 H 1.08999 * 109.47628 * 59.99659 * 12 10 9 37 37 H 1.09001 * 109.46509 * 179.97438 * 12 10 9 38 38 H 1.08995 * 109.46882 * 299.99644 * 12 10 9 39 39 H 1.08999 * 109.47578 * 299.99654 * 13 10 9 40 40 H 1.08992 * 109.47478 * 60.00365 * 13 10 9 41 41 H 0.97000 * 120.00545 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1833 0.0000 4 6 3.5672 1.2019 -0.0061 5 6 4.2584 -0.0090 -0.0001 6 6 5.7274 -0.0317 0.0005 7 8 6.3512 1.0117 -0.0039 8 8 6.3835 -1.2094 0.0058 9 6 7.8345 -1.1558 0.0065 10 6 8.3974 -2.5784 0.0134 11 6 7.9136 -3.3123 1.2656 12 6 7.9153 -3.3237 -1.2328 13 6 9.9264 -2.5217 0.0136 14 6 10.4810 -3.9230 0.0198 15 1 9.8100 -4.7693 0.0228 16 6 11.8449 -4.1246 0.0205 17 7 12.3288 -5.3475 0.0263 18 14 13.0055 -2.6609 0.0145 19 1 13.3130 -2.2674 1.4130 20 1 14.2630 -3.0291 -0.6841 21 1 12.3629 -1.5226 -0.6902 22 6 3.5173 -1.2197 0.0060 23 8 4.0973 -2.2915 0.0108 24 7 2.1713 -1.1800 0.0054 25 1 1.6695 -2.0100 0.0099 26 1 -0.3634 0.0051 1.0277 27 1 -0.3634 0.8875 -0.5182 28 1 -0.3634 -0.8925 -0.5093 29 1 1.6218 2.1121 0.0004 30 1 4.1034 2.1394 -0.0107 31 1 8.1791 -0.6325 -0.8854 32 1 8.1780 -0.6251 0.8945 33 1 6.8244 -3.3527 1.2651 34 1 8.3151 -4.3256 1.2707 35 1 8.2572 -2.7814 2.1535 36 1 8.2599 -2.8008 -2.1250 37 1 8.3168 -4.3370 -1.2281 38 1 6.8261 -3.3640 -1.2333 39 1 10.2708 -1.9991 -0.8788 40 1 10.2702 -1.9907 0.9011 41 1 13.2884 -5.4894 0.0272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195044660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = -132.061667 kcal Electronic energy + Delta-G solvation = -23505.894091 eV Core-core repulsion = 19963.866934 eV Total energy + Delta-G solvation = -3542.027157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44270 -41.09184 -38.77046 -38.39165 -36.79009 -34.81692 -34.40622 -32.63188 -30.05757 -29.20711 -28.04725 -27.68321 -24.98554 -24.72596 -23.99892 -22.34186 -19.99237 -19.47245 -19.01366 -18.88535 -17.48788 -17.47611 -17.05077 -17.02337 -16.57696 -16.23437 -15.55034 -15.30251 -15.26445 -14.67497 -14.39238 -14.28243 -14.08287 -13.84342 -13.73963 -13.41374 -13.07005 -12.88650 -12.87273 -12.73574 -12.47068 -12.32296 -12.17981 -11.90074 -11.80102 -11.68239 -11.52322 -11.34891 -11.26782 -11.13806 -10.97005 -10.72824 -9.12524 -8.24044 -6.25586 -0.71145 0.79637 1.35445 1.36755 1.36850 1.48583 1.65901 1.91583 2.37967 2.60957 3.10012 3.44696 3.54993 3.74461 3.88515 3.89500 3.94945 4.12197 4.16921 4.44521 4.54116 4.61307 4.65397 4.76237 4.84774 4.92141 4.94353 5.00068 5.06025 5.18942 5.20599 5.22143 5.31076 5.35599 5.49647 5.50413 5.57283 5.65076 5.71435 5.79721 6.35848 6.77406 6.81360 6.92518 7.36377 8.91981 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036073 B = 0.003270 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.015965 B = 8561.118115 C = 9135.467284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.233 3.767 3 C -0.254 4.254 4 C 0.098 3.902 5 C -0.328 4.328 6 C 0.514 3.486 7 O -0.552 6.552 8 O -0.331 6.331 9 C 0.082 3.918 10 C -0.046 4.046 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.000 4.000 14 C -0.506 4.506 15 H 0.047 0.953 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.251 1.251 22 C 0.525 3.475 23 O -0.561 6.561 24 N -0.592 5.592 25 H 0.430 0.570 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.201 0.799 30 H 0.158 0.842 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.785 17.369 -0.047 36.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.119 3.881 3 C -0.275 4.275 4 C 0.075 3.925 5 C -0.334 4.334 6 C 0.363 3.637 7 O -0.447 6.447 8 O -0.246 6.246 9 C 0.008 3.992 10 C -0.046 4.046 11 C -0.173 4.173 12 C -0.173 4.173 13 C -0.037 4.037 14 C -0.544 4.544 15 H 0.065 0.935 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.175 1.175 22 C 0.325 3.675 23 O -0.443 6.443 24 N -0.223 5.223 25 H 0.271 0.729 26 H 0.136 0.864 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.218 0.782 30 H 0.175 0.825 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -30.932 16.948 -0.050 35.271 hybrid contribution 1.369 -0.319 0.019 1.406 sum -29.563 16.629 -0.031 33.919 Atomic orbital electron populations 1.21482 0.83410 1.07396 1.06583 1.21813 0.97589 0.84662 0.84035 1.20955 0.92039 0.99372 1.15173 1.22331 0.95442 0.96593 0.78132 1.19937 0.89530 0.95454 1.28453 1.20949 0.89289 0.81461 0.71992 1.90780 1.69822 1.34134 1.49964 1.86810 1.21998 1.32792 1.83000 1.23172 0.76104 0.98284 1.01665 1.20413 0.95326 0.91901 0.96982 1.21583 0.99595 1.00098 0.96068 1.21583 0.99591 1.00054 0.96105 1.19553 0.91384 0.96212 0.96564 1.21281 0.91909 0.92271 1.48986 0.93525 1.25871 1.00166 0.98304 0.94702 1.70049 1.13432 1.22434 1.53316 0.85809 0.78249 0.80451 0.79081 1.19350 1.20975 1.17464 1.16974 0.82087 0.89888 0.78571 1.91062 1.68499 1.32153 1.52591 1.43641 1.07639 1.11194 1.59820 0.72909 0.86439 0.85722 0.88592 0.78209 0.82469 0.91731 0.91664 0.92955 0.93547 0.93411 0.93454 0.93536 0.92954 0.96131 0.96259 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.70 10.06 71.24 0.72 1.42 16 2 C 0.23 1.10 6.80 41.44 0.28 1.38 16 3 C -0.25 -1.52 9.58 21.99 0.21 -1.30 16 4 C 0.10 1.57 9.70 22.84 0.22 1.79 16 5 C -0.33 -8.93 5.92 -19.80 -0.12 -9.05 16 6 C 0.51 18.83 7.88 70.09 0.55 19.39 16 7 O -0.55 -21.41 16.18 19.61 0.32 -21.09 16 8 O -0.33 -13.61 7.08 -50.45 -0.36 -13.97 16 9 C 0.08 3.39 4.33 71.98 0.31 3.70 16 10 C -0.05 -2.09 0.61 -52.18 -0.03 -2.12 16 11 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 12 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 13 C 0.00 0.01 3.11 29.85 0.09 0.11 16 14 C -0.51 -30.02 8.20 25.60 0.21 -29.81 16 15 H 0.05 3.02 5.92 -2.91 -0.02 3.00 16 16 C 0.01 0.35 5.47 84.65 0.46 0.81 16 17 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 18 Si 0.94 46.36 27.47 68.60 1.88 48.24 16 19 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 22 C 0.52 13.91 7.73 85.18 0.66 14.56 16 23 O -0.56 -20.82 16.05 15.63 0.25 -20.57 16 24 N -0.59 -7.60 5.22 -306.55 -1.60 -9.20 16 25 H 0.43 3.47 8.74 -92.72 -0.81 2.66 16 26 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.12 -1.12 8.07 -2.38 -0.02 -1.14 16 28 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.20 -0.55 8.06 -2.91 -0.02 -0.58 16 30 H 0.16 2.28 7.69 -2.91 -0.02 2.25 16 31 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.05 2.27 7.68 -2.39 -0.02 2.26 16 34 H 0.05 2.25 6.62 -2.39 -0.02 2.24 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 2.26 6.61 -2.39 -0.02 2.24 16 38 H 0.05 2.28 7.68 -2.39 -0.02 2.26 16 39 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 40 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 41 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -87.84 341.24 5.71 -82.13 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 0.18 Total: 3.89 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 4.73 Total: -8.40 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.30 Total: -70.24 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: 0.21 Total: -55.62 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.24 kcal Total: -87.84 5.71 -82.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.927 kcal (2) G-P(sol) polarization free energy of solvation -87.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds