Wall clock time and date at job start Tue Mar 31 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99691 * 2 1 4 4 C 1.52999 * 109.46961 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47461 * 67.62844 * 4 3 2 6 6 C 1.46503 * 119.99843 * 278.57426 * 5 4 3 7 7 C 1.50703 * 109.46895 * 269.99316 * 6 5 4 8 8 H 1.07996 * 119.99922 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99787 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99891 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99796 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47141 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47105 * 119.99859 * 11 9 7 14 14 H 1.48504 * 109.47014 * 239.99872 * 11 9 7 15 15 C 1.34773 * 120.00174 * 98.56834 * 5 4 3 16 16 O 1.21578 * 120.00323 * 186.24324 * 15 5 4 17 17 C 1.47606 * 119.99760 * 6.24614 * 15 5 4 18 18 C 1.39757 * 120.09222 * 135.01362 * 17 15 5 19 19 C 1.37675 * 119.91465 * 180.29634 * 18 17 15 20 20 C 1.39023 * 120.08506 * 359.45098 * 19 18 17 21 21 O 1.35710 * 119.90877 * 180.29963 * 20 19 18 22 22 C 1.38972 * 120.17858 * 0.27648 * 20 19 18 23 23 C 1.50700 * 119.95483 * 180.02562 * 22 20 19 24 24 C 1.37723 * 120.08901 * 0.02562 * 22 20 19 25 25 H 1.09000 * 109.47481 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46871 * 300.00042 * 1 2 3 27 27 H 1.09006 * 109.47474 * 59.99699 * 1 2 3 28 28 H 1.08995 * 109.47463 * 60.00509 * 3 2 1 29 29 H 1.09005 * 109.47247 * 300.00037 * 3 2 1 30 30 H 1.09010 * 109.46943 * 307.62975 * 4 3 2 31 31 H 1.09000 * 109.47552 * 187.63338 * 4 3 2 32 32 H 1.08999 * 109.47209 * 29.99552 * 6 5 4 33 33 H 1.09003 * 109.47030 * 149.99941 * 6 5 4 34 34 H 0.97005 * 119.99577 * 180.02562 * 10 9 7 35 35 H 1.08008 * 120.03956 * 0.04551 * 18 17 15 36 36 H 1.07997 * 119.95761 * 179.72795 * 19 18 17 37 37 H 0.96700 * 114.00099 * 89.99844 * 21 20 19 38 38 H 1.09002 * 109.46431 * 90.00825 * 23 22 20 39 39 H 1.08996 * 109.47101 * 209.99732 * 23 22 20 40 40 H 1.08996 * 109.47590 * 330.00760 * 23 22 20 41 41 H 1.07998 * 120.04940 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9803 0.6223 -1.2782 6 6 3.9316 -0.8253 -1.4978 7 6 5.2343 -1.4438 -1.0601 8 1 6.0196 -0.8210 -0.6581 9 6 5.4234 -2.8049 -1.1728 10 7 4.4672 -3.5633 -1.6628 11 14 7.0378 -3.5717 -0.6295 12 1 7.9422 -2.5108 -0.1177 13 1 6.7783 -4.5617 0.4464 14 1 7.6761 -4.2522 -1.7849 15 6 4.4342 1.4367 -2.2514 16 8 4.6961 0.9848 -3.3493 17 6 4.6134 2.8773 -1.9843 18 6 5.7746 3.5294 -2.4080 19 6 5.9407 4.8718 -2.1515 20 6 4.9500 5.5812 -1.4822 21 8 5.1148 6.9057 -1.2367 22 6 3.7913 4.9378 -1.0643 23 6 2.7204 5.7118 -0.3397 24 6 3.6203 3.5938 -1.3115 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8484 0.5303 0.8131 31 1 3.9781 2.1714 0.1359 32 1 3.1134 -1.2534 -0.9187 33 1 3.7715 -1.0269 -2.5570 34 1 4.6001 -4.5209 -1.7418 35 1 6.5426 2.9799 -2.9323 36 1 6.8397 5.3754 -2.4747 37 1 4.7778 7.4805 -1.9375 38 1 2.0149 6.1204 -1.0633 39 1 2.1938 5.0484 0.3463 40 1 3.1777 6.5265 0.2217 41 1 2.7197 3.0943 -0.9861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227026222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:34 Heat of formation + Delta-G solvation = -87.386381 kcal Electronic energy + Delta-G solvation = -24052.974447 eV Core-core repulsion = 20512.884556 eV Total energy + Delta-G solvation = -3540.089892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35915 -38.86140 -37.52925 -36.42986 -34.91662 -32.80151 -32.67005 -30.41592 -29.50964 -27.07614 -26.89640 -25.96441 -23.74338 -22.75054 -22.54328 -21.35099 -18.75586 -18.46307 -16.93950 -16.59047 -16.41632 -16.02986 -15.53015 -15.41577 -15.09977 -14.66386 -14.39328 -14.17565 -13.84280 -13.44540 -13.26593 -13.01314 -12.85714 -12.35565 -12.09842 -12.04835 -11.84345 -11.75855 -11.62733 -11.56789 -11.24091 -10.90513 -10.81325 -10.50047 -10.37897 -10.10401 -9.55410 -9.41210 -9.07483 -8.83373 -8.49409 -8.33378 -7.62803 -5.95645 -3.99576 0.95688 1.28291 3.18235 3.34645 3.41648 3.45652 3.70011 3.94846 4.02363 4.12580 4.50992 4.68467 4.72818 4.93220 5.10867 5.27405 5.35903 5.38152 5.41631 5.44531 5.46747 5.50085 5.55446 5.59067 5.63335 5.67422 5.81091 5.88346 6.02228 6.21098 6.25531 6.36236 6.45312 6.68520 7.27393 7.40099 7.48873 7.56095 7.65650 8.02298 8.33485 8.44348 8.92836 9.09688 9.64066 11.12485 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.005118 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.063110 B = 5469.922826 C = 6787.976791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.041 3.959 4 C 0.099 3.901 5 N -0.580 5.580 6 C 0.244 3.756 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.544 3.456 16 O -0.535 6.535 17 C -0.116 4.116 18 C -0.060 4.060 19 C -0.145 4.145 20 C 0.111 3.889 21 O -0.496 6.496 22 C -0.119 4.119 23 C -0.110 4.110 24 C -0.093 4.093 25 H 0.085 0.915 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.261 0.739 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.388 0.612 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 19.099 3.816 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.037 4.037 4 C -0.025 4.025 5 N -0.310 5.310 6 C 0.126 3.874 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.331 3.669 16 O -0.413 6.413 17 C -0.119 4.119 18 C -0.079 4.079 19 C -0.164 4.164 20 C 0.066 3.934 21 O -0.306 6.306 22 C -0.120 4.120 23 C -0.167 4.167 24 C -0.112 4.112 25 H 0.104 0.896 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.244 0.756 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.633 18.250 3.725 19.460 hybrid contribution 0.482 -0.085 -0.098 0.499 sum -5.151 18.166 3.627 19.227 Atomic orbital electron populations 1.22722 0.82024 1.02753 0.99094 1.88147 1.18766 1.26494 1.95080 1.23211 0.95259 0.85780 0.99415 1.21789 0.91388 1.00464 0.88880 1.48140 1.60583 1.09918 1.12382 1.19448 0.97639 0.71622 0.98710 1.21497 1.00521 0.92444 1.42035 0.92582 1.24904 0.96766 0.97036 0.95301 1.69960 1.32476 1.05260 1.45458 0.86483 0.83759 0.79161 0.78240 1.19871 1.21008 1.20963 1.18154 0.78661 0.85021 0.85095 1.90766 1.51115 1.76481 1.22947 1.20335 0.96082 0.95211 1.00281 1.21099 0.96644 0.93504 0.96654 1.21324 0.99921 0.94770 1.00370 1.18424 0.93097 0.84069 0.97812 1.84735 1.84043 1.13928 1.47942 1.20091 0.95738 0.94466 1.01696 1.20676 0.96343 1.00048 0.99621 1.21558 0.99334 0.93178 0.97108 0.89629 0.94666 0.94553 0.92818 0.93401 0.89073 0.89026 0.92761 0.94090 0.92911 0.84661 0.85019 0.75626 0.91381 0.91394 0.90834 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.41 8.90 -35.23 -0.31 -6.72 16 3 C 0.04 0.60 5.26 37.16 0.20 0.79 16 4 C 0.10 1.69 5.34 -4.04 -0.02 1.67 16 5 N -0.58 -12.77 2.46 -176.26 -0.43 -13.21 16 6 C 0.24 6.61 5.08 -5.19 -0.03 6.58 16 7 C -0.53 -15.29 9.39 -34.44 -0.32 -15.62 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 11 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 15 C 0.54 11.94 7.27 -12.44 -0.09 11.85 16 16 O -0.54 -14.00 16.53 5.30 0.09 -13.92 16 17 C -0.12 -1.96 5.12 -104.95 -0.54 -2.50 16 18 C -0.06 -0.92 9.68 -39.22 -0.38 -1.30 16 19 C -0.15 -1.81 9.97 -39.50 -0.39 -2.21 16 20 C 0.11 1.29 6.68 -39.02 -0.26 1.03 16 21 O -0.50 -4.71 12.52 -18.84 -0.24 -4.94 16 22 C -0.12 -1.39 5.89 -104.54 -0.62 -2.01 16 23 C -0.11 -0.94 9.78 36.01 0.35 -0.59 16 24 C -0.09 -1.28 7.02 -39.22 -0.28 -1.55 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.66 6.39 -51.93 -0.33 0.33 16 30 H 0.09 1.64 8.13 -51.92 -0.42 1.22 16 31 H 0.09 1.34 4.96 -51.93 -0.26 1.08 16 32 H 0.05 1.51 6.42 -51.93 -0.33 1.18 16 33 H 0.04 1.26 7.34 -51.93 -0.38 0.87 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.39 1.85 9.06 45.56 0.41 2.26 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 41 H 0.14 1.74 3.76 -52.49 -0.20 1.54 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -35.99 342.11 -6.21 -42.20 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.83 Total: 1.15 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.36 Total: -0.63 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.30 Total: -39.57 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.46 Total: -25.58 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.99 -6.21 -42.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227026222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.188 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds