Wall clock time and date at job start Tue Mar 31 2020 06:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99691 * 2 1 4 4 C 1.52999 * 109.46961 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47461 * 67.62844 * 4 3 2 6 6 C 1.46503 * 119.99843 * 278.57426 * 5 4 3 7 7 C 1.50703 * 109.46895 * 269.99316 * 6 5 4 8 8 H 1.07996 * 119.99922 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99787 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99891 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99796 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47141 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47105 * 119.99859 * 11 9 7 14 14 H 1.48504 * 109.47014 * 239.99872 * 11 9 7 15 15 C 1.34773 * 120.00174 * 98.56834 * 5 4 3 16 16 O 1.21578 * 120.00323 * 186.24324 * 15 5 4 17 17 C 1.47606 * 119.99760 * 6.24614 * 15 5 4 18 18 C 1.39757 * 120.09222 * 135.01362 * 17 15 5 19 19 C 1.37675 * 119.91465 * 180.29634 * 18 17 15 20 20 C 1.39023 * 120.08506 * 359.45098 * 19 18 17 21 21 O 1.35710 * 119.90877 * 180.29963 * 20 19 18 22 22 C 1.38972 * 120.17858 * 0.27648 * 20 19 18 23 23 C 1.50700 * 119.95483 * 180.02562 * 22 20 19 24 24 C 1.37723 * 120.08901 * 0.02562 * 22 20 19 25 25 H 1.09000 * 109.47481 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46871 * 300.00042 * 1 2 3 27 27 H 1.09006 * 109.47474 * 59.99699 * 1 2 3 28 28 H 1.08995 * 109.47463 * 60.00509 * 3 2 1 29 29 H 1.09005 * 109.47247 * 300.00037 * 3 2 1 30 30 H 1.09010 * 109.46943 * 307.62975 * 4 3 2 31 31 H 1.09000 * 109.47552 * 187.63338 * 4 3 2 32 32 H 1.08999 * 109.47209 * 29.99552 * 6 5 4 33 33 H 1.09003 * 109.47030 * 149.99941 * 6 5 4 34 34 H 0.97005 * 119.99577 * 180.02562 * 10 9 7 35 35 H 1.08008 * 120.03956 * 0.04551 * 18 17 15 36 36 H 1.07997 * 119.95761 * 179.72795 * 19 18 17 37 37 H 0.96700 * 114.00099 * 89.99844 * 21 20 19 38 38 H 1.09002 * 109.46431 * 90.00825 * 23 22 20 39 39 H 1.08996 * 109.47101 * 209.99732 * 23 22 20 40 40 H 1.08996 * 109.47590 * 330.00760 * 23 22 20 41 41 H 1.07998 * 120.04940 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9803 0.6223 -1.2782 6 6 3.9316 -0.8253 -1.4978 7 6 5.2343 -1.4438 -1.0601 8 1 6.0196 -0.8210 -0.6581 9 6 5.4234 -2.8049 -1.1728 10 7 4.4672 -3.5633 -1.6628 11 14 7.0378 -3.5717 -0.6295 12 1 7.9422 -2.5108 -0.1177 13 1 6.7783 -4.5617 0.4464 14 1 7.6761 -4.2522 -1.7849 15 6 4.4342 1.4367 -2.2514 16 8 4.6961 0.9848 -3.3493 17 6 4.6134 2.8773 -1.9843 18 6 5.7746 3.5294 -2.4080 19 6 5.9407 4.8718 -2.1515 20 6 4.9500 5.5812 -1.4822 21 8 5.1148 6.9057 -1.2367 22 6 3.7913 4.9378 -1.0643 23 6 2.7204 5.7118 -0.3397 24 6 3.6203 3.5938 -1.3115 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8484 0.5303 0.8131 31 1 3.9781 2.1714 0.1359 32 1 3.1134 -1.2534 -0.9187 33 1 3.7715 -1.0269 -2.5570 34 1 4.6001 -4.5209 -1.7418 35 1 6.5426 2.9799 -2.9323 36 1 6.8397 5.3754 -2.4747 37 1 4.7778 7.4805 -1.9375 38 1 2.0149 6.1204 -1.0633 39 1 2.1938 5.0484 0.3463 40 1 3.1777 6.5265 0.2217 41 1 2.7197 3.0943 -0.9861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227026222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:33 Heat of formation + Delta-G solvation = -114.210863 kcal Electronic energy + Delta-G solvation = -24054.137644 eV Core-core repulsion = 20512.884556 eV Total energy + Delta-G solvation = -3541.253088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61666 -40.14509 -38.82394 -37.45905 -36.62942 -34.82293 -33.72217 -31.82974 -30.82711 -28.95483 -27.77214 -27.11414 -25.48789 -24.18203 -23.76674 -22.59987 -20.21203 -19.39132 -18.66330 -18.32291 -17.82488 -17.21615 -16.86592 -16.66495 -16.39039 -16.19062 -15.97970 -15.38132 -15.22514 -14.66789 -14.32754 -14.22739 -14.14889 -13.85310 -13.41452 -13.21101 -13.09781 -13.00602 -12.98063 -12.82542 -12.67727 -12.65094 -12.52879 -12.20011 -11.98957 -11.68039 -11.37730 -10.81465 -10.64568 -10.52079 -9.85856 -9.62050 -9.41887 -8.20405 -6.35113 -0.14180 0.26963 1.35384 1.37740 1.49717 1.73516 2.21861 2.41760 2.61396 2.90593 3.09404 3.23686 3.49151 3.80705 3.84766 4.07009 4.14591 4.23038 4.32862 4.40627 4.43213 4.53090 4.59312 4.63746 4.77636 4.85371 4.87729 4.89469 4.92412 5.11063 5.22059 5.28774 5.30005 5.39422 5.42987 5.54593 5.74675 5.84966 6.08620 6.32229 6.68920 6.74897 6.85272 7.23320 7.39194 8.87293 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.005118 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.063110 B = 5469.922826 C = 6787.976791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.043 3.957 4 C 0.095 3.905 5 N -0.586 5.586 6 C 0.265 3.735 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.969 3.031 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.280 1.280 15 C 0.538 3.462 16 O -0.596 6.596 17 C -0.143 4.143 18 C -0.075 4.075 19 C -0.142 4.142 20 C 0.129 3.871 21 O -0.495 6.495 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.088 4.088 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.042 0.958 33 H -0.010 1.010 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.155 0.845 37 H 0.414 0.586 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 22.247 5.911 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.033 4.033 4 C -0.028 4.028 5 N -0.315 5.315 6 C 0.144 3.856 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.793 3.207 12 H -0.192 1.192 13 H -0.193 1.193 14 H -0.206 1.206 15 C 0.327 3.673 16 O -0.479 6.479 17 C -0.147 4.147 18 C -0.094 4.094 19 C -0.160 4.160 20 C 0.084 3.916 21 O -0.309 6.309 22 C -0.113 4.113 23 C -0.165 4.165 24 C -0.107 4.107 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.060 0.940 33 H 0.008 0.992 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.173 0.827 37 H 0.274 0.726 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.883 21.456 5.852 23.004 hybrid contribution 0.503 -0.905 -0.753 1.280 sum -5.380 20.551 5.099 21.847 Atomic orbital electron populations 1.22885 0.79892 1.03187 1.00975 1.88077 1.21306 1.28440 1.95489 1.23264 0.92912 0.85272 1.01893 1.22103 0.93819 1.01083 0.85750 1.48091 1.60804 1.08096 1.14464 1.18813 0.96599 0.75076 0.95070 1.21751 1.01114 0.93101 1.42468 0.93151 1.25855 1.00679 0.97485 0.95048 1.70085 1.34653 1.05762 1.46095 0.85357 0.78884 0.78344 0.78135 1.19206 1.19311 1.20558 1.18988 0.77036 0.87237 0.84000 1.90706 1.53623 1.78215 1.25335 1.19933 0.98540 0.92070 1.04114 1.21053 0.96095 0.94875 0.97426 1.21490 1.01156 0.93336 1.00009 1.18472 0.92299 0.85137 0.95718 1.84679 1.84251 1.12829 1.49135 1.20412 0.96557 0.93553 1.00779 1.20776 0.95656 1.00083 1.00017 1.21594 0.98597 0.94019 0.96450 0.90124 0.91505 0.93769 0.88103 0.92732 0.90526 0.86191 0.94011 0.99165 0.92459 0.86394 0.82732 0.72608 0.89550 0.90076 0.90019 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.50 8.90 -148.98 -1.33 -15.83 16 3 C 0.04 1.20 5.26 71.98 0.38 1.58 16 4 C 0.09 3.24 5.34 86.38 0.46 3.70 16 5 N -0.59 -27.17 2.46 -829.82 -2.04 -29.22 16 6 C 0.27 15.38 5.08 85.63 0.43 15.81 16 7 C -0.55 -33.28 9.39 25.60 0.24 -33.04 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.01 0.50 5.46 84.66 0.46 0.96 16 10 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 11 Si 0.97 46.71 29.54 68.60 2.03 48.73 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 C 0.54 25.04 7.27 86.72 0.63 25.67 16 16 O -0.60 -33.86 16.53 -3.96 -0.07 -33.93 16 17 C -0.14 -4.93 5.12 -20.08 -0.10 -5.04 16 18 C -0.08 -2.34 9.68 22.50 0.22 -2.12 16 19 C -0.14 -3.23 9.97 22.32 0.22 -3.01 16 20 C 0.13 2.53 6.68 22.63 0.15 2.68 16 21 O -0.50 -6.99 12.52 -90.31 -1.13 -8.12 16 22 C -0.11 -2.20 5.89 -19.81 -0.12 -2.32 16 23 C -0.11 -1.32 9.78 71.24 0.70 -0.62 16 24 C -0.09 -2.25 7.02 22.51 0.16 -2.09 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.00 8.14 -2.38 -0.02 0.99 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.43 6.39 -2.38 -0.02 1.41 16 30 H 0.08 2.81 8.13 -2.38 -0.02 2.79 16 31 H 0.12 3.36 4.96 -2.39 -0.01 3.35 16 32 H 0.04 2.49 6.42 -2.39 -0.02 2.48 16 33 H -0.01 -0.66 7.34 -2.39 -0.02 -0.67 16 34 H 0.27 15.62 8.31 -92.70 -0.77 14.84 16 35 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.41 1.78 9.06 -74.06 -0.67 1.11 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 40 H 0.08 0.91 7.52 -2.39 -0.02 0.90 16 41 H 0.15 3.38 3.76 -2.91 -0.01 3.37 16 Total: -1.00 -84.57 342.11 3.21 -81.36 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.38 Total: 10.99 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.08 Total: 4.07 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -1.76 Total: -87.27 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -2.52 Total: -57.88 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -84.57 3.21 -81.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227026222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.853 kcal (2) G-P(sol) polarization free energy of solvation -84.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds