Wall clock time and date at job start Tue Mar 31 2020 07:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47441 * 2 1 4 4 C 1.52993 * 109.47413 * 120.00589 * 2 1 3 5 5 N 1.46499 * 109.47447 * 177.90935 * 4 2 1 6 6 C 1.46511 * 119.99705 * 275.69204 * 5 4 2 7 7 C 1.50696 * 109.47074 * 285.97562 * 6 5 4 8 8 H 1.08007 * 120.00271 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00043 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00092 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00190 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47275 * 59.99552 * 11 9 7 13 13 H 1.48499 * 109.47270 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46932 * 299.99946 * 11 9 7 15 15 C 1.34772 * 120.00610 * 95.69031 * 5 4 2 16 16 O 1.21624 * 119.99706 * 6.68666 * 15 5 4 17 17 C 1.47304 * 120.00598 * 186.68723 * 15 5 4 18 18 C 1.39855 * 120.13177 * 325.40944 * 17 15 5 19 19 C 1.37541 * 119.96450 * 179.97438 * 18 17 15 20 20 C 1.39189 * 120.23923 * 359.97438 * 19 18 17 21 21 O 1.35708 * 119.86345 * 180.02562 * 20 19 18 22 22 C 1.38687 * 120.26985 * 0.04348 * 20 19 18 23 23 C 1.38439 * 120.03616 * 359.95764 * 22 20 19 24 24 O 1.35655 * 120.11878 * 180.29633 * 23 22 20 25 25 H 1.09001 * 109.47255 * 299.99680 * 1 2 3 26 26 H 1.09000 * 109.47727 * 59.99614 * 1 2 3 27 27 H 1.09004 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46883 * 240.00220 * 2 1 3 29 29 H 1.08995 * 109.47577 * 185.10735 * 3 2 1 30 30 H 1.09000 * 109.47031 * 305.11188 * 3 2 1 31 31 H 1.09003 * 109.46765 * 65.11026 * 3 2 1 32 32 H 1.09002 * 109.47236 * 57.90512 * 4 2 1 33 33 H 1.09009 * 109.47067 * 297.90598 * 4 2 1 34 34 H 1.09000 * 109.47021 * 45.97773 * 6 5 4 35 35 H 1.09003 * 109.46548 * 165.97852 * 6 5 4 36 36 H 0.96995 * 119.99849 * 180.02562 * 10 9 7 37 37 H 1.08007 * 120.01800 * 359.97438 * 18 17 15 38 38 H 1.08000 * 119.88149 * 180.02562 * 19 18 17 39 39 H 0.96702 * 113.99944 * 89.99501 * 21 20 19 40 40 H 1.08000 * 119.97629 * 179.97438 * 22 20 19 41 41 H 0.96697 * 114.00129 * 269.71977 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5041 -0.7651 1.2242 6 6 4.1927 -1.8257 0.4843 7 6 4.0792 -3.1227 1.2432 8 1 3.5471 -3.1540 2.1825 9 6 4.6548 -4.2694 0.7385 10 7 5.3024 -4.2315 -0.4056 11 14 4.5136 -5.8773 1.6788 12 1 3.0808 -6.2344 1.8364 13 1 5.2116 -6.9523 0.9290 14 1 5.1356 -5.7234 3.0186 15 6 4.2176 0.1702 1.8818 16 8 3.6517 0.9772 2.5943 17 6 5.6829 0.2151 1.7376 18 6 6.4101 -0.9699 1.5862 19 6 7.7782 -0.9239 1.4514 20 6 8.4431 0.2988 1.4644 21 8 9.7930 0.3354 1.3303 22 6 7.7317 1.4799 1.6144 23 6 6.3545 1.4467 1.7510 24 8 5.6564 2.6013 1.8917 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 3.1261 1.4439 -0.0915 30 1 1.6039 1.9821 -0.8407 31 1 1.7533 1.9292 0.9323 32 1 1.6463 -1.7376 1.2680 33 1 1.7076 -0.1863 2.1388 34 1 3.7355 -1.9387 -0.4987 35 1 5.2443 -1.5636 0.3680 36 1 5.7070 -5.0383 -0.7608 37 1 5.8978 -1.9206 1.5751 38 1 8.3384 -1.8397 1.3341 39 1 10.0955 0.4035 0.4143 40 1 8.2525 2.4260 1.6243 41 1 5.5387 2.8803 2.8101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227603488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:50 Heat of formation + Delta-G solvation = -87.258055 kcal Electronic energy + Delta-G solvation = -24556.225236 eV Core-core repulsion = 21016.140909 eV Total energy + Delta-G solvation = -3540.084327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26939 -38.72502 -37.50130 -35.79650 -35.65685 -34.02589 -32.39389 -30.21135 -29.28682 -27.58829 -26.74494 -25.73335 -23.41817 -22.42337 -22.30517 -20.02620 -19.00428 -18.56278 -17.01204 -16.72197 -16.59526 -16.08817 -15.27900 -15.01675 -14.75479 -14.58558 -14.19908 -14.17126 -13.68299 -13.56261 -13.00115 -12.74159 -12.46742 -12.27076 -11.94107 -11.85954 -11.61522 -11.40129 -11.19715 -11.05265 -10.78985 -10.72319 -10.57381 -10.52564 -10.33250 -10.10490 -9.97369 -9.76125 -9.07950 -8.76786 -8.31533 -8.24624 -7.67089 -6.30341 -4.39658 1.15212 1.58582 3.17964 3.23559 3.25536 3.34302 3.80553 4.08936 4.16878 4.27803 4.72162 5.00359 5.20028 5.23511 5.32158 5.36991 5.44946 5.54898 5.81273 5.92590 5.96615 6.03682 6.08575 6.21061 6.28877 6.32075 6.41445 6.45516 6.50072 6.63457 6.67872 6.73920 6.76707 6.84366 7.06158 7.16558 7.49015 7.64282 7.72687 7.91335 7.94702 8.33707 8.68547 8.98148 9.29014 10.74558 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.008127 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.594416 B = 3444.375908 C = 5804.364957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.136 4.136 4 C 0.125 3.875 5 N -0.586 5.586 6 C 0.207 3.793 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.068 3.932 10 N -0.883 5.883 11 Si 0.897 3.103 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.565 3.435 16 O -0.564 6.564 17 C -0.168 4.168 18 C -0.053 4.053 19 C -0.166 4.166 20 C 0.135 3.865 21 O -0.501 6.501 22 C -0.199 4.199 23 C 0.170 3.830 24 O -0.487 6.487 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.268 0.732 37 H 0.193 0.807 38 H 0.134 0.866 39 H 0.391 0.609 40 H 0.132 0.868 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 7.641 0.356 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.193 4.193 4 C 0.002 3.998 5 N -0.315 5.315 6 C 0.088 3.912 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.136 4.136 10 N -0.520 5.520 11 Si 0.724 3.276 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.353 3.647 16 O -0.445 6.445 17 C -0.172 4.172 18 C -0.070 4.070 19 C -0.184 4.184 20 C 0.090 3.910 21 O -0.311 6.311 22 C -0.218 4.218 23 C 0.123 3.877 24 O -0.298 6.298 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.210 0.790 38 H 0.152 0.848 39 H 0.247 0.753 40 H 0.150 0.850 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.236 7.861 0.569 7.978 hybrid contribution 0.136 -0.992 0.213 1.024 sum 1.372 6.869 0.782 7.048 Atomic orbital electron populations 1.21736 0.95247 1.01534 1.01305 1.21485 0.95270 0.96874 0.99590 1.21731 1.01090 0.95546 1.00939 1.21367 0.80323 1.00792 0.97357 1.47995 1.06090 1.27484 1.49882 1.20265 0.94742 0.84178 0.92052 1.21426 1.36071 0.93042 1.07673 0.91766 1.24972 0.94659 0.99109 0.94874 1.69921 1.34285 1.29555 1.18287 0.86565 0.78621 0.82458 0.79996 1.20006 1.21025 1.19884 1.17858 0.86157 0.80765 0.79869 1.90651 1.71953 1.41750 1.40158 1.20493 0.94761 0.93532 1.08389 1.22664 0.93509 1.00778 0.90097 1.21463 0.94791 0.97534 1.04649 1.18491 0.82393 0.91968 0.98148 1.84727 1.17944 1.96173 1.32272 1.21409 0.93048 0.98578 1.08742 1.18145 0.88545 0.84689 0.96278 1.84654 1.75223 1.37681 1.32235 0.92862 0.93006 0.92657 0.91077 0.92980 0.93871 0.92487 0.90335 0.90695 0.95155 0.91473 0.92198 0.79010 0.84844 0.75315 0.85010 0.74789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 37.15 0.34 -1.56 16 2 C -0.11 -1.87 3.14 -90.63 -0.28 -2.15 16 3 C -0.14 -2.28 8.20 37.16 0.30 -1.98 16 4 C 0.12 2.36 4.96 -4.05 -0.02 2.34 16 5 N -0.59 -12.37 2.25 -176.37 -0.40 -12.76 16 6 C 0.21 4.76 4.72 -5.19 -0.02 4.74 16 7 C -0.54 -13.38 7.54 -34.44 -0.26 -13.64 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.88 -22.79 13.29 55.43 0.74 -22.05 16 11 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 15 C 0.56 12.03 5.83 -12.58 -0.07 11.96 16 16 O -0.56 -12.48 14.85 -12.73 -0.19 -12.67 16 17 C -0.17 -3.33 5.52 -104.84 -0.58 -3.91 16 18 C -0.05 -1.04 7.40 -39.23 -0.29 -1.33 16 19 C -0.17 -2.86 9.96 -39.48 -0.39 -3.25 16 20 C 0.13 2.09 6.70 -39.06 -0.26 1.83 16 21 O -0.50 -6.54 13.48 -18.83 -0.25 -6.80 16 22 C -0.20 -3.08 9.91 -39.34 -0.39 -3.47 16 23 C 0.17 2.98 6.68 -38.74 -0.26 2.72 16 24 O -0.49 -8.07 12.12 -36.66 -0.44 -8.51 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.25 8.00 -51.92 -0.42 0.84 16 29 H 0.05 0.99 6.95 -51.93 -0.36 0.63 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 32 H 0.08 1.49 7.87 -51.93 -0.41 1.08 16 33 H 0.07 1.43 7.19 -51.92 -0.37 1.05 16 34 H 0.03 0.75 8.00 -51.93 -0.42 0.33 16 35 H 0.07 1.58 3.68 -53.23 -0.20 1.38 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.19 4.25 4.04 -52.48 -0.21 4.04 16 38 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.39 3.18 9.06 45.56 0.41 3.59 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.39 5.12 9.06 45.56 0.41 5.53 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -28.81 338.76 -6.80 -35.61 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -4.06 Total: 13.59 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.29 Total: -6.10 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.34 Total: -34.81 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.89 Total: -27.98 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.81 -6.80 -35.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227603488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.648 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds