Wall clock time and date at job start Tue Mar 31 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47441 * 2 1 4 4 C 1.52993 * 109.47413 * 120.00589 * 2 1 3 5 5 N 1.46499 * 109.47447 * 177.90935 * 4 2 1 6 6 C 1.46511 * 119.99705 * 275.69204 * 5 4 2 7 7 C 1.50696 * 109.47074 * 285.97562 * 6 5 4 8 8 H 1.08007 * 120.00271 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00043 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00092 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00190 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47275 * 59.99552 * 11 9 7 13 13 H 1.48499 * 109.47270 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46932 * 299.99946 * 11 9 7 15 15 C 1.34772 * 120.00610 * 95.69031 * 5 4 2 16 16 O 1.21624 * 119.99706 * 6.68666 * 15 5 4 17 17 C 1.47304 * 120.00598 * 186.68723 * 15 5 4 18 18 C 1.39855 * 120.13177 * 325.40944 * 17 15 5 19 19 C 1.37541 * 119.96450 * 179.97438 * 18 17 15 20 20 C 1.39189 * 120.23923 * 359.97438 * 19 18 17 21 21 O 1.35708 * 119.86345 * 180.02562 * 20 19 18 22 22 C 1.38687 * 120.26985 * 0.04348 * 20 19 18 23 23 C 1.38439 * 120.03616 * 359.95764 * 22 20 19 24 24 O 1.35655 * 120.11878 * 180.29633 * 23 22 20 25 25 H 1.09001 * 109.47255 * 299.99680 * 1 2 3 26 26 H 1.09000 * 109.47727 * 59.99614 * 1 2 3 27 27 H 1.09004 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46883 * 240.00220 * 2 1 3 29 29 H 1.08995 * 109.47577 * 185.10735 * 3 2 1 30 30 H 1.09000 * 109.47031 * 305.11188 * 3 2 1 31 31 H 1.09003 * 109.46765 * 65.11026 * 3 2 1 32 32 H 1.09002 * 109.47236 * 57.90512 * 4 2 1 33 33 H 1.09009 * 109.47067 * 297.90598 * 4 2 1 34 34 H 1.09000 * 109.47021 * 45.97773 * 6 5 4 35 35 H 1.09003 * 109.46548 * 165.97852 * 6 5 4 36 36 H 0.96995 * 119.99849 * 180.02562 * 10 9 7 37 37 H 1.08007 * 120.01800 * 359.97438 * 18 17 15 38 38 H 1.08000 * 119.88149 * 180.02562 * 19 18 17 39 39 H 0.96702 * 113.99944 * 89.99501 * 21 20 19 40 40 H 1.08000 * 119.97629 * 179.97438 * 22 20 19 41 41 H 0.96697 * 114.00129 * 269.71977 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5041 -0.7651 1.2242 6 6 4.1927 -1.8257 0.4843 7 6 4.0792 -3.1227 1.2432 8 1 3.5471 -3.1540 2.1825 9 6 4.6548 -4.2694 0.7385 10 7 5.3024 -4.2315 -0.4056 11 14 4.5136 -5.8773 1.6788 12 1 3.0808 -6.2344 1.8364 13 1 5.2116 -6.9523 0.9290 14 1 5.1356 -5.7234 3.0186 15 6 4.2176 0.1702 1.8818 16 8 3.6517 0.9772 2.5943 17 6 5.6829 0.2151 1.7376 18 6 6.4101 -0.9699 1.5862 19 6 7.7782 -0.9239 1.4514 20 6 8.4431 0.2988 1.4644 21 8 9.7930 0.3354 1.3303 22 6 7.7317 1.4799 1.6144 23 6 6.3545 1.4467 1.7510 24 8 5.6564 2.6013 1.8917 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 3.1261 1.4439 -0.0915 30 1 1.6039 1.9821 -0.8407 31 1 1.7533 1.9292 0.9323 32 1 1.6463 -1.7376 1.2680 33 1 1.7076 -0.1863 2.1388 34 1 3.7355 -1.9387 -0.4987 35 1 5.2443 -1.5636 0.3680 36 1 5.7070 -5.0383 -0.7608 37 1 5.8978 -1.9206 1.5751 38 1 8.3384 -1.8397 1.3341 39 1 10.0955 0.4035 0.4143 40 1 8.2525 2.4260 1.6243 41 1 5.5387 2.8803 2.8101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227603488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:49 Heat of formation + Delta-G solvation = -106.084242 kcal Electronic energy + Delta-G solvation = -24557.041601 eV Core-core repulsion = 21016.140909 eV Total energy + Delta-G solvation = -3540.900692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73695 -40.14285 -38.76433 -37.37296 -36.98423 -35.60342 -34.18902 -31.55974 -30.66857 -29.39697 -28.04557 -27.19257 -25.16563 -23.89819 -23.68308 -21.42701 -20.48106 -19.87702 -18.57827 -18.22317 -18.20242 -17.62142 -16.76779 -16.47009 -16.22644 -16.16690 -15.59735 -15.56377 -15.15553 -15.01741 -14.44861 -14.25717 -14.09994 -13.68230 -13.42938 -13.10704 -13.03208 -12.88689 -12.81869 -12.69409 -12.32288 -12.23996 -12.07519 -11.85588 -11.80130 -11.63444 -11.54688 -11.40304 -10.76533 -10.55754 -9.74978 -9.65919 -9.34931 -8.22005 -6.37609 -0.21495 0.24054 1.42826 1.44434 1.51346 1.82305 2.25258 2.40126 2.66519 2.96136 3.07478 3.46221 3.69909 3.93876 3.95437 4.05101 4.11683 4.19897 4.43885 4.59827 4.66758 4.69754 4.78528 4.88242 4.93394 4.98485 5.00627 5.05486 5.13363 5.19289 5.24561 5.31634 5.36286 5.39814 5.45021 5.65152 5.68572 5.82630 6.01448 6.57760 6.72971 6.78948 6.81124 7.26691 7.38390 8.82187 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.008127 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.594416 B = 3444.375908 C = 5804.364957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.125 4.125 4 C 0.122 3.878 5 N -0.590 5.590 6 C 0.222 3.778 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.032 3.968 10 N -0.908 5.908 11 Si 0.952 3.048 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.272 1.272 15 C 0.560 3.440 16 O -0.579 6.579 17 C -0.198 4.198 18 C -0.066 4.066 19 C -0.173 4.173 20 C 0.157 3.843 21 O -0.498 6.498 22 C -0.188 4.188 23 C 0.171 3.829 24 O -0.494 6.494 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.006 0.994 35 H 0.068 0.932 36 H 0.270 0.730 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.417 0.583 40 H 0.162 0.838 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 8.439 0.388 8.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.183 4.183 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.102 3.898 7 C -0.588 4.588 8 H 0.071 0.929 9 C -0.170 4.170 10 N -0.545 5.545 11 Si 0.777 3.223 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.350 3.650 16 O -0.462 6.462 17 C -0.201 4.201 18 C -0.084 4.084 19 C -0.191 4.191 20 C 0.112 3.888 21 O -0.313 6.313 22 C -0.207 4.207 23 C 0.125 3.875 24 O -0.307 6.307 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.181 0.819 38 H 0.158 0.842 39 H 0.277 0.723 40 H 0.180 0.820 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.036 8.670 0.592 8.925 hybrid contribution -0.014 -1.163 0.209 1.182 sum 2.022 7.506 0.801 7.815 Atomic orbital electron populations 1.21687 0.92411 1.02342 1.02643 1.21442 0.97571 0.96219 0.97543 1.21626 0.99276 0.95799 1.01571 1.21494 0.79361 1.00707 0.98547 1.48021 1.06947 1.27195 1.49720 1.19977 0.94714 0.84319 0.90832 1.21509 1.35964 0.94026 1.07323 0.92850 1.25572 0.94294 1.01626 0.95530 1.70000 1.34926 1.30291 1.19330 0.85700 0.78476 0.79223 0.78886 1.19911 1.20452 1.19690 1.18173 0.87053 0.80360 0.79405 1.90614 1.72546 1.42231 1.40777 1.20507 0.93904 0.94772 1.10934 1.22306 0.94622 0.99552 0.91945 1.21538 0.93894 0.98899 1.04812 1.18383 0.83338 0.91128 0.95983 1.84669 1.16021 1.95971 1.34623 1.21628 0.92036 0.99827 1.07176 1.18232 0.89372 0.84106 0.95778 1.84609 1.75339 1.37032 1.33685 0.92047 0.91101 0.92174 0.92478 0.95791 0.91467 0.93111 0.91047 0.90981 0.97567 0.91499 0.92042 0.81907 0.84166 0.72255 0.82001 0.73048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.19 71.98 0.66 -2.75 16 2 C -0.11 -3.61 3.14 -10.80 -0.03 -3.64 16 3 C -0.13 -4.19 8.20 71.98 0.59 -3.60 16 4 C 0.12 4.73 4.96 86.38 0.43 5.16 16 5 N -0.59 -25.94 2.25 -830.15 -1.87 -27.81 16 6 C 0.22 10.67 4.72 85.63 0.40 11.08 16 7 C -0.55 -27.96 7.54 25.60 0.19 -27.77 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.03 1.61 5.46 84.65 0.46 2.07 16 10 N -0.91 -47.60 13.29 21.45 0.28 -47.31 16 11 Si 0.95 40.46 29.54 68.60 2.03 42.49 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 15 C 0.56 24.56 5.83 86.63 0.50 25.06 16 16 O -0.58 -26.11 14.85 13.09 0.19 -25.91 16 17 C -0.20 -7.95 5.52 -20.00 -0.11 -8.06 16 18 C -0.07 -2.66 7.40 22.50 0.17 -2.49 16 19 C -0.17 -5.84 9.96 22.33 0.22 -5.62 16 20 C 0.16 4.48 6.70 22.61 0.15 4.63 16 21 O -0.50 -11.21 13.48 -90.28 -1.22 -12.43 16 22 C -0.19 -5.32 9.91 22.42 0.22 -5.09 16 23 C 0.17 5.85 6.68 22.82 0.15 6.00 16 24 O -0.49 -15.78 12.12 -72.50 -0.88 -16.66 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.06 2.06 8.00 -2.38 -0.02 2.04 16 29 H 0.02 0.91 6.95 -2.39 -0.02 0.89 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.74 8.06 -2.39 -0.02 1.72 16 32 H 0.07 2.82 7.87 -2.39 -0.02 2.80 16 33 H 0.07 2.82 7.19 -2.38 -0.02 2.80 16 34 H 0.01 0.33 8.00 -2.39 -0.02 0.31 16 35 H 0.07 3.29 3.68 -3.61 -0.01 3.27 16 36 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.16 7.54 4.04 -2.91 -0.01 7.53 16 38 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.42 5.09 9.06 -74.06 -0.67 4.42 16 40 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.41 10.14 9.06 -74.06 -0.67 9.47 16 Total: -1.00 -62.28 338.76 2.29 -59.99 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.27 Total: 32.65 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.01 Total: -5.01 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.58 Total: -75.12 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.90 Total: -55.00 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -62.28 2.29 -59.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227603488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.094 kcal (2) G-P(sol) polarization free energy of solvation -62.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds