Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99889 * 2 1 4 4 C 1.52999 * 109.47477 * 59.99665 * 3 2 1 5 5 C 1.52998 * 109.47069 * 299.99613 * 3 2 1 6 6 C 1.53006 * 109.47021 * 179.97438 * 3 2 1 7 7 C 1.50700 * 109.47160 * 302.70022 * 6 3 2 8 8 O 1.21288 * 119.99818 * 6.64749 * 7 6 3 9 9 N 1.34777 * 119.99874 * 186.64478 * 7 6 3 10 10 C 1.39922 * 119.99928 * 174.97970 * 9 7 6 11 11 C 1.38962 * 120.03270 * 326.16447 * 10 9 7 12 12 C 1.38159 * 120.06253 * 180.02562 * 11 10 9 13 13 C 1.38166 * 120.14254 * 359.70082 * 12 11 10 14 14 C 1.38922 * 120.06799 * 0.55513 * 13 12 11 15 15 O 1.35741 * 120.03151 * 179.74618 * 14 13 12 16 16 C 1.34833 * 116.99603 * 174.25978 * 15 14 13 17 17 H 1.07997 * 120.00301 * 5.16167 * 16 15 14 18 18 C 1.38655 * 119.99794 * 185.15962 * 16 15 14 19 19 N 1.31554 * 120.00265 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46863 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46909 * 119.99698 * 20 18 16 23 23 H 1.48494 * 109.47132 * 240.00308 * 20 18 16 24 24 C 1.38712 * 120.03561 * 146.19283 * 10 9 7 25 25 H 1.08998 * 109.46939 * 300.00093 * 1 2 3 26 26 H 1.09005 * 109.46724 * 59.99896 * 1 2 3 27 27 H 1.08998 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47269 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47225 * 300.00430 * 4 3 2 30 30 H 1.09001 * 109.47196 * 59.99866 * 4 3 2 31 31 H 1.08998 * 109.47087 * 305.80941 * 5 3 2 32 32 H 1.09004 * 109.46981 * 65.81513 * 5 3 2 33 33 H 1.09001 * 109.47369 * 185.81350 * 5 3 2 34 34 H 1.08996 * 109.47158 * 182.69459 * 6 3 2 35 35 H 1.09003 * 109.46607 * 62.69881 * 6 3 2 36 36 H 0.96998 * 119.99775 * 354.98415 * 9 7 6 37 37 H 1.07994 * 119.97306 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.92846 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.97485 * 180.30109 * 13 12 11 40 40 H 0.97004 * 120.00089 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.07119 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 6 3.9752 0.3800 1.1966 8 8 3.1485 -0.1554 1.9044 9 7 5.2870 0.2553 1.4795 10 6 5.6916 -0.4021 2.6466 11 6 4.9198 -0.3121 3.7987 12 6 5.3189 -0.9606 4.9515 13 6 6.4827 -1.7052 4.9612 14 6 7.2614 -1.7946 3.8142 15 8 8.4073 -2.5222 3.8261 16 6 9.0531 -2.6661 2.6512 17 1 8.7007 -2.1443 1.7738 18 6 10.1696 -3.4841 2.5696 19 7 10.5993 -4.1194 3.6385 20 14 11.0639 -3.6842 0.9417 21 1 10.3863 -2.8695 -0.0987 22 1 12.4692 -3.2278 1.0897 23 1 11.0474 -5.1138 0.5403 24 6 6.8638 -1.1438 2.6549 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.0024 3.0604 1.2494 29 1 0.4722 2.1508 1.2492 30 1 1.8803 1.5240 2.1392 31 1 1.7889 1.4743 -2.1362 32 1 0.4844 2.2411 -1.1988 33 1 2.0817 3.0196 -1.3029 34 1 3.9787 2.1793 0.0490 35 1 3.8608 0.6859 -0.9124 36 1 5.9506 0.6213 0.8742 37 1 4.0071 0.2651 3.7929 38 1 4.7177 -0.8889 5.8458 39 1 6.7897 -2.2149 5.8625 40 1 11.3802 -4.6919 3.5812 41 1 7.4653 -1.2151 1.7608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230934044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = -80.135794 kcal Electronic energy + Delta-G solvation = -23402.594972 eV Core-core repulsion = 19862.819490 eV Total energy + Delta-G solvation = -3539.775482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39900 -39.07497 -38.18579 -36.31603 -34.12212 -33.50845 -32.21459 -29.78975 -28.91871 -27.94969 -27.59193 -26.51225 -25.26218 -22.29726 -21.77143 -20.28364 -19.78215 -17.97026 -17.77081 -16.88992 -16.37520 -15.80031 -15.30651 -15.21629 -15.05789 -14.89726 -14.20572 -14.05096 -13.79818 -13.55512 -13.46219 -13.06737 -12.82668 -12.55053 -12.44664 -12.24942 -12.01332 -11.74420 -11.72663 -11.54516 -11.34907 -11.10292 -10.92820 -10.73920 -10.73366 -10.43010 -9.77058 -9.62513 -9.49523 -9.24864 -8.78709 -7.67682 -7.11736 -6.42993 -4.02661 2.03374 2.41248 2.95626 3.12797 3.14276 3.19148 3.32045 3.66199 3.97480 4.43196 4.60411 4.63283 4.76167 5.04141 5.10885 5.15798 5.21758 5.29047 5.29608 5.33210 5.35395 5.43595 5.56409 5.66787 5.73268 5.79917 5.85810 6.01668 6.11115 6.22401 6.30777 6.33550 6.67702 7.01725 7.04244 7.16281 7.19812 7.34501 7.45699 7.77861 7.86258 8.01673 8.45018 9.02651 9.73507 10.75264 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.003486 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.834069 B = 8030.283780 C = 8870.970185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.127 3.873 4 C -0.186 4.186 5 C -0.178 4.178 6 C -0.129 4.129 7 C 0.510 3.490 8 O -0.497 6.497 9 N -0.675 5.675 10 C 0.184 3.816 11 C -0.205 4.205 12 C -0.064 4.064 13 C -0.202 4.202 14 C 0.169 3.831 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.258 4.258 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.404 0.596 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.269 0.731 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 13.327 -9.161 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.087 3.913 4 C -0.243 4.243 5 C -0.236 4.236 6 C -0.169 4.169 7 C 0.297 3.703 8 O -0.370 6.370 9 N -0.321 5.321 10 C 0.091 3.909 11 C -0.226 4.226 12 C -0.082 4.082 13 C -0.222 4.222 14 C 0.115 3.885 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.279 4.279 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.239 0.761 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.403 12.528 -8.445 21.576 hybrid contribution 0.634 0.306 -1.297 1.476 sum -14.769 12.834 -9.742 21.857 Atomic orbital electron populations 1.22719 0.82012 1.02460 0.99553 1.88107 1.18913 1.25974 1.94799 1.21103 0.91529 0.84264 0.94385 1.22555 1.01568 1.00392 0.99763 1.22439 1.02054 1.00924 0.98157 1.21771 0.95211 1.01601 0.98347 1.20493 0.82022 0.81267 0.86561 1.90722 1.51411 1.44888 1.49970 1.43581 1.07750 1.57225 1.23507 1.17403 0.94496 0.93879 0.85140 1.20507 1.02282 1.07877 0.91927 1.20523 0.95050 0.95703 0.96968 1.20244 0.96949 1.07116 0.97849 1.19069 0.86642 0.90195 0.92642 1.84003 1.29350 1.60995 1.33749 1.21328 1.09813 1.29116 0.86529 0.89187 1.25274 0.96658 0.95471 0.99106 1.70047 1.23896 1.27629 1.28236 0.85662 0.79123 0.78558 0.80136 1.19207 1.20175 1.20151 1.20825 1.00612 1.06040 1.00468 0.93915 0.94440 0.89978 0.92113 0.92370 0.89677 0.91588 0.91932 0.91357 0.87699 0.87995 0.76085 0.86460 0.86718 0.86449 0.92103 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.21 101.05 1.03 1.32 16 2 O -0.36 -4.75 8.90 -55.94 -0.50 -5.25 16 3 C 0.13 1.32 0.71 -90.62 -0.06 1.25 16 4 C -0.19 -1.90 7.97 37.16 0.30 -1.60 16 5 C -0.18 -1.33 8.07 37.16 0.30 -1.03 16 6 C -0.13 -1.30 4.97 -27.88 -0.14 -1.44 16 7 C 0.51 7.50 7.04 -10.99 -0.08 7.43 16 8 O -0.50 -9.09 10.92 -15.16 -0.17 -9.25 16 9 N -0.68 -10.23 5.34 -9.88 -0.05 -10.28 16 10 C 0.18 3.57 6.27 -83.72 -0.52 3.05 16 11 C -0.21 -3.99 8.65 -39.34 -0.34 -4.33 16 12 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 13 C -0.20 -4.42 9.99 -39.35 -0.39 -4.81 16 14 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 15 O -0.18 -5.10 9.76 0.07 0.00 -5.10 16 16 C -0.39 -10.96 9.49 30.89 0.29 -10.67 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 20 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.26 -5.68 9.08 -39.21 -0.36 -6.03 16 25 H 0.04 0.41 6.42 -51.93 -0.33 0.07 16 26 H 0.04 0.30 6.55 -51.93 -0.34 -0.04 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 30 H 0.08 1.13 5.99 -51.93 -0.31 0.81 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.43 6.87 -51.93 -0.36 0.07 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 4.76 8.82 -40.82 -0.36 4.40 16 37 H 0.12 2.20 6.44 -52.49 -0.34 1.87 16 38 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -34.11 335.82 -6.11 -40.22 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.46 Total: 7.40 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.73 Total: -13.61 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.71 Total: -34.94 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.66 Total: -19.60 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.11 -6.11 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230934044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.914 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds