Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99889 * 2 1 4 4 C 1.52999 * 109.47477 * 59.99665 * 3 2 1 5 5 C 1.52998 * 109.47069 * 299.99613 * 3 2 1 6 6 C 1.53006 * 109.47021 * 179.97438 * 3 2 1 7 7 C 1.50700 * 109.47160 * 302.70022 * 6 3 2 8 8 O 1.21288 * 119.99818 * 6.64749 * 7 6 3 9 9 N 1.34777 * 119.99874 * 186.64478 * 7 6 3 10 10 C 1.39922 * 119.99928 * 174.97970 * 9 7 6 11 11 C 1.38962 * 120.03270 * 326.16447 * 10 9 7 12 12 C 1.38159 * 120.06253 * 180.02562 * 11 10 9 13 13 C 1.38166 * 120.14254 * 359.70082 * 12 11 10 14 14 C 1.38922 * 120.06799 * 0.55513 * 13 12 11 15 15 O 1.35741 * 120.03151 * 179.74618 * 14 13 12 16 16 C 1.34833 * 116.99603 * 174.25978 * 15 14 13 17 17 H 1.07997 * 120.00301 * 5.16167 * 16 15 14 18 18 C 1.38655 * 119.99794 * 185.15962 * 16 15 14 19 19 N 1.31554 * 120.00265 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46863 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46909 * 119.99698 * 20 18 16 23 23 H 1.48494 * 109.47132 * 240.00308 * 20 18 16 24 24 C 1.38712 * 120.03561 * 146.19283 * 10 9 7 25 25 H 1.08998 * 109.46939 * 300.00093 * 1 2 3 26 26 H 1.09005 * 109.46724 * 59.99896 * 1 2 3 27 27 H 1.08998 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47269 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47225 * 300.00430 * 4 3 2 30 30 H 1.09001 * 109.47196 * 59.99866 * 4 3 2 31 31 H 1.08998 * 109.47087 * 305.80941 * 5 3 2 32 32 H 1.09004 * 109.46981 * 65.81513 * 5 3 2 33 33 H 1.09001 * 109.47369 * 185.81350 * 5 3 2 34 34 H 1.08996 * 109.47158 * 182.69459 * 6 3 2 35 35 H 1.09003 * 109.46607 * 62.69881 * 6 3 2 36 36 H 0.96998 * 119.99775 * 354.98415 * 9 7 6 37 37 H 1.07994 * 119.97306 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.92846 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.97485 * 180.30109 * 13 12 11 40 40 H 0.97004 * 120.00089 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.07119 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 6 3.9752 0.3800 1.1966 8 8 3.1485 -0.1554 1.9044 9 7 5.2870 0.2553 1.4795 10 6 5.6916 -0.4021 2.6466 11 6 4.9198 -0.3121 3.7987 12 6 5.3189 -0.9606 4.9515 13 6 6.4827 -1.7052 4.9612 14 6 7.2614 -1.7946 3.8142 15 8 8.4073 -2.5222 3.8261 16 6 9.0531 -2.6661 2.6512 17 1 8.7007 -2.1443 1.7738 18 6 10.1696 -3.4841 2.5696 19 7 10.5993 -4.1194 3.6385 20 14 11.0639 -3.6842 0.9417 21 1 10.3863 -2.8695 -0.0987 22 1 12.4692 -3.2278 1.0897 23 1 11.0474 -5.1138 0.5403 24 6 6.8638 -1.1438 2.6549 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.0024 3.0604 1.2494 29 1 0.4722 2.1508 1.2492 30 1 1.8803 1.5240 2.1392 31 1 1.7889 1.4743 -2.1362 32 1 0.4844 2.2411 -1.1988 33 1 2.0817 3.0196 -1.3029 34 1 3.9787 2.1793 0.0490 35 1 3.8608 0.6859 -0.9124 36 1 5.9506 0.6213 0.8742 37 1 4.0071 0.2651 3.7929 38 1 4.7177 -0.8889 5.8458 39 1 6.7897 -2.2149 5.8625 40 1 11.3802 -4.6919 3.5812 41 1 7.4653 -1.2151 1.7608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230934044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = -102.989494 kcal Electronic energy + Delta-G solvation = -23403.585983 eV Core-core repulsion = 19862.819490 eV Total energy + Delta-G solvation = -3540.766493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63987 -40.54703 -39.41387 -37.96565 -35.55552 -34.36106 -34.19550 -31.19965 -30.51295 -29.08331 -28.25096 -27.46788 -27.15074 -23.70379 -23.48134 -21.56875 -20.76167 -19.77657 -19.28899 -18.21237 -17.34755 -17.08550 -16.82909 -16.48133 -16.24094 -15.91678 -15.81231 -15.69133 -15.50442 -14.82600 -14.58188 -14.24778 -14.18890 -13.83498 -13.54785 -13.23957 -13.17770 -12.89761 -12.78075 -12.75752 -12.61893 -12.45823 -12.41306 -12.15021 -12.08521 -11.48714 -11.40928 -11.16191 -10.79475 -10.66442 -10.31808 -9.32854 -8.84709 -8.46179 -6.15101 0.43120 0.70564 1.36151 1.44731 1.54625 1.74410 2.11804 2.18882 2.84658 2.92477 3.16785 3.51094 3.65475 3.78499 4.05747 4.11701 4.23306 4.33433 4.45721 4.48382 4.56435 4.58653 4.62713 4.66549 4.73119 4.74816 4.78787 4.93103 4.94344 5.02692 5.11761 5.12874 5.25605 5.42127 5.44972 5.53555 5.67930 5.69055 6.02564 6.19921 6.43015 6.57484 6.98256 7.27140 7.78149 8.77210 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.003486 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.834069 B = 8030.283780 C = 8870.970185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.118 3.882 4 C -0.183 4.183 5 C -0.171 4.171 6 C -0.123 4.123 7 C 0.506 3.494 8 O -0.534 6.534 9 N -0.669 5.669 10 C 0.191 3.809 11 C -0.199 4.199 12 C -0.053 4.053 13 C -0.217 4.217 14 C 0.134 3.866 15 O -0.228 6.228 16 C -0.413 4.413 17 H 0.103 0.897 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.249 1.249 22 H -0.267 1.267 23 H -0.271 1.271 24 C -0.263 4.263 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.422 0.578 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.117 0.883 40 H 0.273 0.727 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.622 15.708 -11.698 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.078 3.922 4 C -0.240 4.240 5 C -0.228 4.228 6 C -0.162 4.162 7 C 0.296 3.704 8 O -0.410 6.410 9 N -0.315 5.315 10 C 0.096 3.904 11 C -0.220 4.220 12 C -0.071 4.071 13 C -0.237 4.237 14 C 0.083 3.917 15 O -0.134 6.134 16 C -0.490 4.490 17 H 0.120 0.880 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.172 1.172 22 H -0.192 1.192 23 H -0.196 1.196 24 C -0.285 4.285 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.161 0.839 35 H 0.137 0.863 36 H 0.260 0.740 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.883 14.965 -11.009 25.104 hybrid contribution 0.792 -0.288 -0.431 0.947 sum -16.091 14.677 -11.440 24.601 Atomic orbital electron populations 1.22813 0.80956 1.02712 1.00557 1.88053 1.20356 1.28026 1.95068 1.21359 0.91474 0.83622 0.95697 1.22516 1.02175 1.00933 0.98383 1.22373 1.02671 1.01409 0.96368 1.21924 0.95366 1.02765 0.96166 1.21431 0.81004 0.80707 0.87303 1.90713 1.52247 1.46389 1.51608 1.43637 1.08842 1.56589 1.22478 1.17471 0.93205 0.92856 0.86848 1.20828 1.02249 1.07032 0.91873 1.20912 0.93946 0.93861 0.98409 1.20466 0.97830 1.08092 0.97334 1.19597 0.86574 0.90888 0.94617 1.83972 1.31467 1.63347 1.34601 1.21864 1.10368 1.29711 0.87007 0.87953 1.26608 0.97276 0.94707 1.03450 1.70194 1.25128 1.29394 1.31165 0.84523 0.77761 0.78809 0.75064 1.17167 1.19225 1.19649 1.20862 1.01635 1.06353 0.99646 0.93976 0.92271 0.90269 0.90042 0.91745 0.93015 0.91470 0.91379 0.89190 0.83907 0.86329 0.74023 0.85210 0.83032 0.86447 0.91837 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.21 113.37 1.16 1.63 16 2 O -0.40 -9.79 8.90 -129.18 -1.15 -10.94 16 3 C 0.12 2.09 0.71 -10.79 -0.01 2.08 16 4 C -0.18 -3.28 7.97 71.98 0.57 -2.71 16 5 C -0.17 -1.86 8.07 71.98 0.58 -1.28 16 6 C -0.12 -2.02 4.97 29.85 0.15 -1.87 16 7 C 0.51 13.72 7.04 87.66 0.62 14.34 16 8 O -0.53 -18.84 10.92 16.74 0.18 -18.66 16 9 N -0.67 -18.77 5.34 -303.55 -1.62 -20.39 16 10 C 0.19 7.20 6.27 38.14 0.24 7.44 16 11 C -0.20 -7.44 8.65 22.42 0.19 -7.24 16 12 C -0.05 -1.97 10.03 22.23 0.22 -1.75 16 13 C -0.22 -9.71 9.99 22.42 0.22 -9.48 16 14 C 0.13 6.85 6.64 22.56 0.15 7.00 16 15 O -0.23 -13.79 9.76 -22.68 -0.22 -14.01 16 16 C -0.41 -24.00 9.49 67.92 0.64 -23.36 16 17 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 18 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 19 N -0.92 -56.62 13.67 21.61 0.30 -56.33 16 20 Si 1.02 42.45 29.55 68.60 2.03 44.48 16 21 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 C -0.26 -11.68 9.08 22.51 0.20 -11.48 16 25 H 0.04 0.75 6.42 -2.39 -0.02 0.74 16 26 H 0.06 0.80 6.55 -2.38 -0.02 0.79 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.04 6.54 -2.39 -0.02 1.02 16 30 H 0.05 1.30 5.99 -2.39 -0.01 1.28 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.68 6.87 -2.39 -0.02 0.66 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.42 8.78 8.82 -92.71 -0.82 7.96 16 37 H 0.13 4.61 6.44 -2.91 -0.02 4.59 16 38 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.13 5.59 5.64 -2.91 -0.02 5.57 16 Total: -1.00 -78.71 335.82 5.17 -73.54 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.24 Total: 29.82 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 5.42 Total: -27.51 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.32 Total: -76.72 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.19 Total: -43.61 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -78.71 5.17 -73.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230934044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.451 kcal (2) G-P(sol) polarization free energy of solvation -78.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds