Wall clock time and date at job start Tue Mar 31 2020 07:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46977 * 2 1 4 4 C 1.53001 * 109.47120 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47401 * 300.00217 * 3 2 1 6 6 C 1.42894 * 114.00161 * 300.00364 * 5 3 2 7 7 C 1.50701 * 109.46904 * 60.00157 * 3 2 1 8 8 O 1.21285 * 120.00100 * 239.99840 * 7 3 2 9 9 N 1.34777 * 119.99966 * 60.00252 * 7 3 2 10 10 C 1.39926 * 120.00127 * 174.66357 * 9 7 3 11 11 C 1.38964 * 120.03407 * 146.60983 * 10 9 7 12 12 C 1.38156 * 120.06328 * 179.97438 * 11 10 9 13 13 C 1.38166 * 120.14302 * 359.74038 * 12 11 10 14 14 C 1.38914 * 120.06719 * 0.51466 * 13 12 11 15 15 O 1.35752 * 120.03217 * 179.76551 * 14 13 12 16 16 C 1.34828 * 116.99968 * 353.90106 * 15 14 13 17 17 H 1.08004 * 119.99895 * 354.60891 * 16 15 14 18 18 C 1.38654 * 120.00053 * 174.60784 * 16 15 14 19 19 N 1.31556 * 120.00089 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99635 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47347 * 89.99961 * 20 18 16 22 22 H 1.48502 * 109.46685 * 209.99734 * 20 18 16 23 23 H 1.48500 * 109.47168 * 329.99653 * 20 18 16 24 24 C 1.38712 * 120.03592 * 326.58595 * 10 9 7 25 25 H 1.09004 * 109.47180 * 299.99224 * 1 2 3 26 26 H 1.08995 * 109.47702 * 60.00197 * 1 2 3 27 27 H 1.09006 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46684 * 240.00594 * 2 1 3 29 29 H 1.08996 * 109.47438 * 120.00539 * 2 1 3 30 30 H 1.09003 * 109.46734 * 299.99829 * 4 3 2 31 31 H 1.08998 * 109.47058 * 59.99926 * 4 3 2 32 32 H 1.08996 * 109.46945 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47276 * 180.02562 * 6 5 3 34 34 H 1.09010 * 109.46659 * 299.99960 * 6 5 3 35 35 H 1.09000 * 109.47715 * 59.99413 * 6 5 3 36 36 H 0.97006 * 119.99588 * 354.66268 * 9 7 3 37 37 H 1.08006 * 119.96634 * 359.95234 * 11 10 9 38 38 H 1.08002 * 119.92856 * 179.97438 * 12 11 10 39 39 H 1.07995 * 119.96509 * 180.25671 * 13 12 11 40 40 H 0.97004 * 119.99856 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.06937 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 1.5636 2.1162 -1.1668 6 6 1.9851 1.5199 -2.3951 7 6 1.5376 2.1528 1.2305 8 8 0.8403 3.1389 1.1193 9 7 1.8633 1.6923 2.4546 10 6 1.4917 2.4130 3.5949 11 6 1.1707 1.7413 4.7683 12 6 0.8042 2.4523 5.8948 13 6 0.7607 3.8328 5.8602 14 6 1.0752 4.5099 4.6887 15 8 1.0276 5.8662 4.6542 16 6 0.5471 6.4899 5.7487 17 1 0.1411 5.9113 6.5653 18 6 0.5743 7.8740 5.8259 19 7 0.1050 8.4826 6.8937 20 14 1.2772 8.8745 4.4137 21 1 0.1954 9.1975 3.4491 22 1 1.8616 10.1335 4.9419 23 1 2.3337 8.0881 3.7276 24 6 1.4437 3.7988 3.5555 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9336 0.9286 0.8892 31 1 3.9329 0.9288 -0.8908 32 1 3.9332 2.4702 -0.0002 33 1 1.5827 2.0899 -3.2325 34 1 3.0741 1.5215 -2.4447 35 1 1.6207 0.4939 -2.4448 36 1 2.3554 0.8612 2.5450 37 1 1.2075 0.6623 4.7996 38 1 0.5548 1.9280 6.8055 39 1 0.4778 4.3859 6.7436 40 1 0.1243 9.4509 6.9478 41 1 1.6926 4.3231 2.6447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234004657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:15 Heat of formation + Delta-G solvation = -76.045602 kcal Electronic energy + Delta-G solvation = -23801.828375 eV Core-core repulsion = 20262.230256 eV Total energy + Delta-G solvation = -3539.598118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81771 -39.18594 -38.11355 -36.52551 -34.53773 -33.39215 -32.33910 -30.65174 -29.62168 -28.48351 -27.43623 -25.21713 -24.35085 -23.27374 -21.91819 -21.16406 -19.72778 -18.34414 -17.75095 -17.11075 -16.49028 -15.97706 -15.32383 -15.26702 -15.16746 -15.06218 -14.33136 -13.98726 -13.66668 -13.60898 -13.54315 -13.38732 -12.97897 -12.70704 -12.54153 -12.33636 -12.24213 -12.18297 -11.69988 -11.60444 -11.39903 -11.19740 -11.10171 -10.96892 -10.74576 -10.20238 -9.85861 -9.82481 -9.59923 -9.26049 -8.82624 -7.78994 -7.30379 -6.37950 -4.04244 1.89754 2.23955 2.74534 2.80867 3.27864 3.32378 3.47375 3.73682 4.23404 4.29501 4.40660 4.50648 4.57988 4.85553 4.94301 5.00066 5.04130 5.08553 5.13531 5.22623 5.28772 5.39310 5.51220 5.56650 5.61363 5.71768 5.75561 5.77030 6.06087 6.09180 6.12530 6.26814 6.49557 6.71977 6.90923 6.93042 7.13039 7.33728 7.58777 7.60303 7.83061 8.06100 8.27088 8.97652 9.60821 10.69496 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.004136 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.491593 B = 6767.489492 C = 7745.622068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C 0.101 3.899 4 C -0.179 4.179 5 O -0.350 6.350 6 C 0.023 3.977 7 C 0.522 3.478 8 O -0.487 6.487 9 N -0.667 5.667 10 C 0.178 3.822 11 C -0.227 4.227 12 C -0.059 4.059 13 C -0.232 4.232 14 C 0.175 3.825 15 O -0.213 6.213 16 C -0.388 4.388 17 H 0.107 0.893 18 C 0.065 3.935 19 N -0.879 5.879 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.189 4.189 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.404 0.596 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.279 0.721 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -19.578 -13.641 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C 0.057 3.943 4 C -0.237 4.237 5 O -0.268 6.268 6 C -0.074 4.074 7 C 0.307 3.693 8 O -0.358 6.358 9 N -0.314 5.314 10 C 0.085 3.915 11 C -0.248 4.248 12 C -0.078 4.078 13 C -0.251 4.251 14 C 0.122 3.878 15 O -0.118 6.118 16 C -0.463 4.463 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.517 5.517 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.210 4.210 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.240 0.760 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.089 0.911 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.985 -18.280 -13.850 23.703 hybrid contribution 0.622 -0.195 -0.388 0.758 sum 6.607 -18.475 -14.238 24.243 Atomic orbital electron populations 1.21747 0.94215 1.01802 1.03358 1.22163 0.98093 0.94674 1.03527 1.21397 0.94181 0.92124 0.86582 1.22425 0.93539 1.04196 1.03503 1.88125 1.73810 1.52592 1.12235 1.22888 0.99417 0.98584 0.86487 1.19992 0.80574 0.85046 0.83669 1.90811 1.34256 1.24863 1.85853 1.43296 1.57483 1.26284 1.04291 1.17111 0.98803 0.90086 0.85504 1.20316 1.12548 0.98429 0.93550 1.20559 0.96847 0.93504 0.96857 1.21302 1.10121 0.94447 0.99258 1.18848 0.92606 0.83885 0.92509 1.83599 1.73255 1.14347 1.40584 1.20783 1.38814 0.90876 0.95864 0.87548 1.24452 0.96253 0.95718 0.97446 1.69648 1.44485 1.10389 1.27189 0.86199 0.80355 0.78919 0.81602 1.19733 1.20820 1.18331 1.20017 1.10965 0.91661 0.98344 0.92213 0.91698 0.92265 0.90305 0.90428 0.90717 0.90813 0.90703 0.89206 0.93610 0.93600 0.76016 0.87150 0.86699 0.84786 0.91063 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.52 37.16 0.35 -1.17 16 2 C -0.15 -1.20 4.51 -26.73 -0.12 -1.32 16 3 C 0.10 1.13 0.67 -91.77 -0.06 1.06 16 4 C -0.18 -1.52 8.15 37.16 0.30 -1.22 16 5 O -0.35 -4.55 9.21 -55.14 -0.51 -5.06 16 6 C 0.02 0.19 10.21 101.05 1.03 1.22 16 7 C 0.52 8.10 5.03 -10.98 -0.06 8.04 16 8 O -0.49 -10.21 14.19 -14.36 -0.20 -10.41 16 9 N -0.67 -9.23 5.12 -9.88 -0.05 -9.28 16 10 C 0.18 3.19 6.27 -83.72 -0.53 2.67 16 11 C -0.23 -3.73 9.96 -39.34 -0.39 -4.12 16 12 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 13 C -0.23 -5.08 9.13 -39.36 -0.36 -5.44 16 14 C 0.17 4.26 6.64 -39.13 -0.26 4.00 16 15 O -0.21 -5.94 8.58 0.05 0.00 -5.94 16 16 C -0.39 -11.26 9.90 30.89 0.31 -10.95 16 17 H 0.11 3.12 5.53 -52.48 -0.29 2.83 16 18 C 0.06 1.86 5.49 -17.52 -0.10 1.77 16 19 N -0.88 -25.87 13.96 55.48 0.77 -25.09 16 20 Si 0.90 22.61 28.62 -169.99 -4.86 17.75 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.26 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.19 -4.17 8.60 -39.21 -0.34 -4.51 16 25 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 26 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.49 6.54 -51.93 -0.34 0.15 16 29 H 0.08 0.49 7.45 -51.93 -0.39 0.10 16 30 H 0.07 0.50 7.70 -51.93 -0.40 0.10 16 31 H 0.07 0.46 6.54 -51.93 -0.34 0.12 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.31 6.41 -51.92 -0.33 -0.03 16 35 H 0.05 0.30 6.42 -51.93 -0.33 -0.03 16 36 H 0.40 3.85 7.68 -40.82 -0.31 3.54 16 37 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 3.06 5.71 -52.49 -0.30 2.76 16 40 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.13 3.01 6.42 -52.48 -0.34 2.68 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -34.43 335.29 -5.80 -40.23 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.40 Total: 4.15 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.61 Total: -11.42 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.72 Total: -34.37 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.71 Total: -21.41 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.86 Total: 17.75 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.43 -5.80 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234004657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.812 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds