Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46977 * 2 1 4 4 C 1.53001 * 109.47120 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47401 * 300.00217 * 3 2 1 6 6 C 1.42894 * 114.00161 * 300.00364 * 5 3 2 7 7 C 1.50701 * 109.46904 * 60.00157 * 3 2 1 8 8 O 1.21285 * 120.00100 * 239.99840 * 7 3 2 9 9 N 1.34777 * 119.99966 * 60.00252 * 7 3 2 10 10 C 1.39926 * 120.00127 * 174.66357 * 9 7 3 11 11 C 1.38964 * 120.03407 * 146.60983 * 10 9 7 12 12 C 1.38156 * 120.06328 * 179.97438 * 11 10 9 13 13 C 1.38166 * 120.14302 * 359.74038 * 12 11 10 14 14 C 1.38914 * 120.06719 * 0.51466 * 13 12 11 15 15 O 1.35752 * 120.03217 * 179.76551 * 14 13 12 16 16 C 1.34828 * 116.99968 * 353.90106 * 15 14 13 17 17 H 1.08004 * 119.99895 * 354.60891 * 16 15 14 18 18 C 1.38654 * 120.00053 * 174.60784 * 16 15 14 19 19 N 1.31556 * 120.00089 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99635 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47347 * 89.99961 * 20 18 16 22 22 H 1.48502 * 109.46685 * 209.99734 * 20 18 16 23 23 H 1.48500 * 109.47168 * 329.99653 * 20 18 16 24 24 C 1.38712 * 120.03592 * 326.58595 * 10 9 7 25 25 H 1.09004 * 109.47180 * 299.99224 * 1 2 3 26 26 H 1.08995 * 109.47702 * 60.00197 * 1 2 3 27 27 H 1.09006 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46684 * 240.00594 * 2 1 3 29 29 H 1.08996 * 109.47438 * 120.00539 * 2 1 3 30 30 H 1.09003 * 109.46734 * 299.99829 * 4 3 2 31 31 H 1.08998 * 109.47058 * 59.99926 * 4 3 2 32 32 H 1.08996 * 109.46945 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47276 * 180.02562 * 6 5 3 34 34 H 1.09010 * 109.46659 * 299.99960 * 6 5 3 35 35 H 1.09000 * 109.47715 * 59.99413 * 6 5 3 36 36 H 0.97006 * 119.99588 * 354.66268 * 9 7 3 37 37 H 1.08006 * 119.96634 * 359.95234 * 11 10 9 38 38 H 1.08002 * 119.92856 * 179.97438 * 12 11 10 39 39 H 1.07995 * 119.96509 * 180.25671 * 13 12 11 40 40 H 0.97004 * 119.99856 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.06937 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 1.5636 2.1162 -1.1668 6 6 1.9851 1.5199 -2.3951 7 6 1.5376 2.1528 1.2305 8 8 0.8403 3.1389 1.1193 9 7 1.8633 1.6923 2.4546 10 6 1.4917 2.4130 3.5949 11 6 1.1707 1.7413 4.7683 12 6 0.8042 2.4523 5.8948 13 6 0.7607 3.8328 5.8602 14 6 1.0752 4.5099 4.6887 15 8 1.0276 5.8662 4.6542 16 6 0.5471 6.4899 5.7487 17 1 0.1411 5.9113 6.5653 18 6 0.5743 7.8740 5.8259 19 7 0.1050 8.4826 6.8937 20 14 1.2772 8.8745 4.4137 21 1 0.1954 9.1975 3.4491 22 1 1.8616 10.1335 4.9419 23 1 2.3337 8.0881 3.7276 24 6 1.4437 3.7988 3.5555 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9336 0.9286 0.8892 31 1 3.9329 0.9288 -0.8908 32 1 3.9332 2.4702 -0.0002 33 1 1.5827 2.0899 -3.2325 34 1 3.0741 1.5215 -2.4447 35 1 1.6207 0.4939 -2.4448 36 1 2.3554 0.8612 2.5450 37 1 1.2075 0.6623 4.7996 38 1 0.5548 1.9280 6.8055 39 1 0.4778 4.3859 6.7436 40 1 0.1243 9.4509 6.9478 41 1 1.6926 4.3231 2.6447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234004657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -100.423604 kcal Electronic energy + Delta-G solvation = -23802.885484 eV Core-core repulsion = 20262.230256 eV Total energy + Delta-G solvation = -3540.655228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.00479 -40.75808 -39.37147 -38.12209 -35.83842 -34.51358 -34.29840 -31.53902 -31.20044 -29.95123 -28.11986 -27.26343 -25.28000 -24.37688 -23.32322 -22.68976 -20.88572 -19.95373 -19.53210 -18.47484 -17.55357 -17.02676 -16.84221 -16.74954 -16.35811 -16.14264 -15.87022 -15.71771 -15.49914 -14.70431 -14.43198 -14.33426 -14.24105 -14.21459 -14.06705 -13.70382 -13.33466 -13.14315 -12.97417 -12.88790 -12.76591 -12.50830 -12.30580 -12.15423 -12.02577 -11.85918 -11.51267 -11.29409 -10.90142 -10.68200 -10.58424 -9.42612 -8.95789 -8.53609 -6.25400 0.33910 0.61954 1.25351 1.29973 1.45971 1.52946 1.68986 2.24486 2.73565 2.86971 3.06597 3.11535 3.48848 3.58905 3.82005 4.07580 4.23328 4.32178 4.33541 4.36994 4.46573 4.50043 4.59253 4.61838 4.67336 4.69292 4.76605 4.87819 4.89799 4.98678 5.05225 5.14383 5.32423 5.33201 5.34733 5.38908 5.65486 5.74916 5.88115 6.08517 6.20127 6.44402 6.81305 7.10580 7.57434 8.57974 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.004136 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.491593 B = 6767.489492 C = 7745.622068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.103 3.897 4 C -0.177 4.177 5 O -0.394 6.394 6 C 0.016 3.984 7 C 0.516 3.484 8 O -0.552 6.552 9 N -0.647 5.647 10 C 0.185 3.815 11 C -0.192 4.192 12 C -0.050 4.050 13 C -0.247 4.247 14 C 0.135 3.865 15 O -0.250 6.250 16 C -0.398 4.398 17 H 0.088 0.912 18 C 0.016 3.984 19 N -0.918 5.918 20 Si 0.962 3.038 21 H -0.270 1.270 22 H -0.258 1.258 23 H -0.272 1.272 24 C -0.206 4.206 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.431 0.569 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.115 0.885 40 H 0.286 0.714 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 -24.228 -14.900 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.178 4.178 3 C 0.060 3.940 4 C -0.234 4.234 5 O -0.313 6.313 6 C -0.079 4.079 7 C 0.304 3.696 8 O -0.428 6.428 9 N -0.296 5.296 10 C 0.091 3.909 11 C -0.212 4.212 12 C -0.068 4.068 13 C -0.267 4.267 14 C 0.085 3.915 15 O -0.158 6.158 16 C -0.474 4.474 17 H 0.105 0.895 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.183 1.183 23 H -0.197 1.197 24 C -0.228 4.228 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.271 0.729 37 H 0.187 0.813 38 H 0.176 0.824 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.671 -23.022 -15.119 28.591 hybrid contribution 0.103 0.872 -0.088 0.883 sum 7.774 -22.150 -15.206 27.970 Atomic orbital electron populations 1.21746 0.95872 1.02569 1.00994 1.22236 0.96497 0.92582 1.06492 1.21513 0.95657 0.92843 0.83959 1.22472 0.91160 1.03529 1.06256 1.88074 1.74859 1.54386 1.13984 1.23114 1.00636 0.99497 0.84649 1.21064 0.79112 0.84184 0.85216 1.90791 1.37267 1.27907 1.86806 1.43180 1.56999 1.26635 1.02823 1.17276 0.97264 0.88775 0.87605 1.20937 1.07771 1.01103 0.91432 1.21050 0.94998 0.91578 0.99200 1.21362 1.10993 0.96585 0.97761 1.19357 0.94667 0.83069 0.94402 1.83540 1.75613 1.16328 1.40299 1.20762 1.39368 0.91376 0.95936 0.89472 1.25154 0.96853 0.96538 0.99737 1.69707 1.46420 1.10991 1.28739 0.85354 0.79321 0.78076 0.78758 1.19547 1.18265 1.19692 1.20052 1.12239 0.93776 0.96722 0.95384 0.93381 0.89802 0.87187 0.87526 0.88284 0.87770 0.93121 0.89188 0.91833 0.91486 0.72854 0.81312 0.82377 0.86753 0.90468 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.52 71.98 0.69 -1.97 16 2 C -0.14 -1.66 4.51 30.59 0.14 -1.52 16 3 C 0.10 2.06 0.67 -11.54 -0.01 2.05 16 4 C -0.18 -2.38 8.15 71.98 0.59 -1.79 16 5 O -0.39 -9.89 9.21 -129.94 -1.20 -11.09 16 6 C 0.02 0.23 10.21 113.37 1.16 1.39 16 7 C 0.52 15.55 5.03 87.66 0.44 15.99 16 8 O -0.55 -24.14 14.19 15.99 0.23 -23.91 16 9 N -0.65 -16.07 5.12 -303.55 -1.55 -17.63 16 10 C 0.19 6.28 6.27 38.14 0.24 6.52 16 11 C -0.19 -5.39 9.96 22.42 0.22 -5.17 16 12 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 13 C -0.25 -11.10 9.13 22.41 0.20 -10.90 16 14 C 0.13 6.93 6.64 22.56 0.15 7.08 16 15 O -0.25 -14.94 8.58 -22.75 -0.20 -15.13 16 16 C -0.40 -24.72 9.90 67.92 0.67 -24.05 16 17 H 0.09 5.53 5.53 -2.91 -0.02 5.52 16 18 C 0.02 0.97 5.49 84.83 0.47 1.44 16 19 N -0.92 -56.39 13.96 21.61 0.30 -56.09 16 20 Si 0.96 48.84 28.62 68.60 1.96 50.80 16 21 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.27 -14.19 7.11 99.48 0.71 -13.48 16 24 C -0.21 -9.45 8.60 22.51 0.19 -9.26 16 25 H 0.03 0.64 7.22 -2.38 -0.02 0.63 16 26 H 0.05 0.97 7.68 -2.39 -0.02 0.95 16 27 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.11 0.70 6.54 -2.39 -0.02 0.69 16 29 H 0.11 0.66 7.45 -2.39 -0.02 0.64 16 30 H 0.10 0.82 7.70 -2.39 -0.02 0.80 16 31 H 0.10 0.79 6.54 -2.39 -0.02 0.77 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 0.64 6.41 -2.38 -0.02 0.63 16 35 H 0.07 0.63 6.42 -2.39 -0.02 0.61 16 36 H 0.43 5.94 7.68 -92.70 -0.71 5.23 16 37 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.11 5.54 5.71 -2.91 -0.02 5.53 16 40 H 0.29 16.07 8.31 -92.71 -0.77 15.30 16 41 H 0.10 5.20 6.42 -2.91 -0.02 5.18 16 Total: -1.00 -85.03 335.29 5.27 -79.76 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.35 Total: 14.88 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 5.37 Total: -21.59 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.25 Total: -73.72 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -1.16 Total: -50.13 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.96 Total: 50.80 kcal Total: -85.03 5.27 -79.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234004657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.663 kcal (2) G-P(sol) polarization free energy of solvation -85.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds