Wall clock time and date at job start Tue Mar 31 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47332 * 2 1 4 4 C 1.52992 * 109.47381 * 184.99905 * 3 2 1 5 5 O 1.42907 * 109.47305 * 64.99616 * 3 2 1 6 6 C 1.42899 * 113.99842 * 59.99917 * 5 3 2 7 7 C 1.50701 * 109.47076 * 305.00051 * 3 2 1 8 8 O 1.21286 * 120.00446 * 119.99590 * 7 3 2 9 9 N 1.34778 * 120.00092 * 299.99390 * 7 3 2 10 10 C 1.39917 * 120.00394 * 174.79228 * 9 7 3 11 11 C 1.38964 * 120.03677 * 326.16781 * 10 9 7 12 12 C 1.38159 * 120.06485 * 179.76416 * 11 10 9 13 13 C 1.38167 * 120.14277 * 0.51081 * 12 11 10 14 14 C 1.38909 * 120.06786 * 359.74702 * 13 12 11 15 15 O 1.35752 * 120.03317 * 179.97438 * 14 13 12 16 16 C 1.34829 * 116.99805 * 185.92359 * 15 14 13 17 17 H 1.07999 * 120.00433 * 5.41204 * 16 15 14 18 18 C 1.38656 * 119.99917 * 185.40557 * 16 15 14 19 19 N 1.31563 * 119.99814 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00398 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46838 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47065 * 120.00023 * 20 18 16 23 23 H 1.48494 * 109.47069 * 240.00495 * 20 18 16 24 24 C 1.38717 * 120.03372 * 146.44533 * 10 9 7 25 25 H 1.08997 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47120 * 300.00511 * 1 2 3 27 27 H 1.09010 * 109.46631 * 60.00352 * 1 2 3 28 28 H 1.08999 * 109.46911 * 239.99983 * 2 1 3 29 29 H 1.08998 * 109.46747 * 120.00117 * 2 1 3 30 30 H 1.08999 * 109.46972 * 299.99453 * 4 3 2 31 31 H 1.08994 * 109.47460 * 60.00138 * 4 3 2 32 32 H 1.09003 * 109.47509 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46668 * 60.00479 * 6 5 3 34 34 H 1.08998 * 109.46911 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47069 * 300.00270 * 6 5 3 36 36 H 0.97008 * 119.99815 * 354.80361 * 9 7 3 37 37 H 1.08000 * 119.96631 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.92878 * 180.23278 * 12 11 10 39 39 H 1.07993 * 119.96451 * 179.71775 * 13 12 11 40 40 H 0.97004 * 119.99526 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.06994 * 359.95681 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4443 -0.1257 5 8 1.6620 2.0814 1.2211 6 6 2.1823 1.4502 2.3927 7 6 1.4392 2.1877 -1.1639 8 8 0.7545 3.1693 -0.9671 9 7 1.6626 1.7635 -2.4235 10 6 1.0180 2.3880 -3.4968 11 6 -0.2691 2.8879 -3.3397 12 6 -0.9043 3.5091 -4.3977 13 6 -0.2667 3.6259 -5.6179 14 6 1.0178 3.1235 -5.7829 15 8 1.6434 3.2383 -6.9822 16 6 2.8362 2.6233 -7.1116 17 1 3.2115 1.9992 -6.3140 18 6 3.5812 2.7919 -8.2688 19 7 3.1243 3.5524 -9.2403 20 14 5.2335 1.9393 -8.4486 21 1 5.5175 1.1472 -7.2249 22 1 5.1984 1.0350 -9.6259 23 1 6.2978 2.9573 -8.6379 24 6 1.6608 2.5037 -4.7206 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9994 0.9053 0.7162 31 1 3.8532 0.9570 -1.0570 32 1 3.9282 2.4720 -0.1261 33 1 3.2716 1.4517 2.3528 34 1 1.8508 1.9951 3.2766 35 1 1.8219 0.4227 2.4423 36 1 2.2703 1.0249 -2.5859 37 1 -0.7717 2.7945 -2.3883 38 1 -1.9032 3.9001 -4.2721 39 1 -0.7677 4.1079 -6.4443 40 1 3.6454 3.6700 -10.0500 41 1 2.6595 2.1127 -4.8463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234135727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:18 Heat of formation + Delta-G solvation = -79.380276 kcal Electronic energy + Delta-G solvation = -23784.205094 eV Core-core repulsion = 20244.462374 eV Total energy + Delta-G solvation = -3539.742721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.78638 -39.09031 -38.02997 -36.31092 -34.57286 -33.42606 -32.23717 -30.61538 -29.26706 -28.45721 -27.43953 -25.34768 -24.32690 -23.21947 -21.82606 -21.27332 -19.61986 -18.23111 -17.91561 -16.96270 -16.46842 -15.92543 -15.35230 -15.27925 -15.02931 -14.86538 -14.24840 -14.11307 -13.64643 -13.61063 -13.53889 -13.35660 -13.01808 -12.83843 -12.52739 -12.33364 -12.16623 -11.77381 -11.60462 -11.52003 -11.37206 -11.19539 -11.07594 -10.92579 -10.79392 -10.45873 -9.84829 -9.80356 -9.59279 -9.32247 -8.82271 -7.74349 -7.16429 -6.46181 -4.05880 1.94783 2.36659 2.77264 2.87911 3.10337 3.11018 3.16340 3.78200 3.94287 4.27229 4.48759 4.55164 4.63889 4.89460 4.99087 5.06335 5.09074 5.11052 5.26291 5.27345 5.31744 5.39820 5.53978 5.66101 5.70167 5.79446 5.79978 5.98037 6.05261 6.10967 6.23313 6.27167 6.62090 6.79528 6.97366 6.99950 7.12434 7.30770 7.41237 7.67758 7.79875 7.97986 8.29804 8.99245 9.69975 10.71987 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.004015 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.582139 B = 6972.808392 C = 7969.432583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C 0.100 3.900 4 C -0.181 4.181 5 O -0.351 6.351 6 C 0.022 3.978 7 C 0.527 3.473 8 O -0.497 6.497 9 N -0.666 5.666 10 C 0.182 3.818 11 C -0.206 4.206 12 C -0.062 4.062 13 C -0.200 4.200 14 C 0.169 3.831 15 O -0.176 6.176 16 C -0.392 4.392 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.255 4.255 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.405 0.595 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.269 0.731 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -9.061 18.469 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C 0.057 3.943 4 C -0.239 4.239 5 O -0.269 6.269 6 C -0.074 4.074 7 C 0.313 3.687 8 O -0.369 6.369 9 N -0.312 5.312 10 C 0.090 3.910 11 C -0.226 4.226 12 C -0.081 4.081 13 C -0.220 4.220 14 C 0.115 3.885 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.277 4.277 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.240 0.760 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.079 0.921 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.441 -8.003 18.234 19.918 hybrid contribution 1.507 -1.052 -0.065 1.839 sum 1.066 -9.056 18.170 20.329 Atomic orbital electron populations 1.21759 0.94297 1.01936 1.03142 1.22163 0.98057 0.94613 1.03685 1.21404 0.94608 0.92360 0.85924 1.22448 0.93725 1.04149 1.03546 1.88100 1.73742 1.52805 1.12252 1.22891 0.98488 0.98163 0.87870 1.19909 0.81189 0.84476 0.83164 1.90744 1.36933 1.24741 1.84475 1.43382 1.46806 1.36155 1.04879 1.17371 0.91299 0.96290 0.86076 1.20540 0.94237 1.08077 0.99782 1.20531 0.98560 0.97176 0.91841 1.20255 0.94287 1.08964 0.98452 1.19076 0.91662 0.92156 0.85654 1.84024 1.32733 1.65049 1.26155 1.21312 0.94516 1.27095 1.03891 0.89221 1.25281 0.99365 0.97047 0.94811 1.70050 1.37839 1.35739 1.06023 0.85664 0.80354 0.78748 0.78716 1.19223 1.20136 1.20156 1.20806 1.01908 1.11998 0.92999 0.92204 0.91815 0.92183 0.90240 0.90256 0.90788 0.90642 0.90737 0.93593 0.89247 0.93556 0.76005 0.86391 0.86570 0.86347 0.92062 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.49 37.16 0.35 -1.23 16 2 C -0.15 -1.32 4.66 -26.73 -0.12 -1.44 16 3 C 0.10 1.16 0.67 -91.78 -0.06 1.10 16 4 C -0.18 -1.66 8.14 37.15 0.30 -1.36 16 5 O -0.35 -4.48 9.42 -55.14 -0.52 -5.00 16 6 C 0.02 0.18 10.22 101.05 1.03 1.21 16 7 C 0.53 8.25 4.79 -10.98 -0.05 8.20 16 8 O -0.50 -9.89 14.22 -14.36 -0.20 -10.10 16 9 N -0.67 -10.15 5.15 -9.88 -0.05 -10.20 16 10 C 0.18 3.51 6.27 -83.72 -0.52 2.98 16 11 C -0.21 -4.00 8.65 -39.34 -0.34 -4.34 16 12 C -0.06 -1.19 10.03 -39.64 -0.40 -1.58 16 13 C -0.20 -4.31 9.99 -39.36 -0.39 -4.70 16 14 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 15 O -0.18 -4.99 9.76 0.05 0.00 -4.99 16 16 C -0.39 -10.77 9.44 30.89 0.29 -10.48 16 17 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -25.08 13.67 55.48 0.76 -24.33 16 20 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 24 C -0.26 -5.51 9.04 -39.20 -0.35 -5.87 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 27 H 0.06 0.75 7.07 -51.92 -0.37 0.39 16 28 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 29 H 0.08 0.55 6.29 -51.93 -0.33 0.22 16 30 H 0.07 0.51 6.54 -51.93 -0.34 0.17 16 31 H 0.07 0.59 7.46 -51.93 -0.39 0.21 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.31 6.42 -51.93 -0.33 -0.02 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.31 6.31 -51.93 -0.33 -0.02 16 36 H 0.40 4.84 7.78 -40.82 -0.32 4.52 16 37 H 0.12 2.27 6.45 -52.49 -0.34 1.93 16 38 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.13 2.72 5.71 -52.49 -0.30 2.42 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -33.83 336.45 -5.97 -39.80 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.38 Total: 7.37 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.63 Total: -12.73 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.71 Total: -34.52 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.72 Total: -20.09 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.83 -5.97 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234135727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.583 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds