Wall clock time and date at job start Tue Mar 31 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47332 * 2 1 4 4 C 1.52992 * 109.47381 * 184.99905 * 3 2 1 5 5 O 1.42907 * 109.47305 * 64.99616 * 3 2 1 6 6 C 1.42899 * 113.99842 * 59.99917 * 5 3 2 7 7 C 1.50701 * 109.47076 * 305.00051 * 3 2 1 8 8 O 1.21286 * 120.00446 * 119.99590 * 7 3 2 9 9 N 1.34778 * 120.00092 * 299.99390 * 7 3 2 10 10 C 1.39917 * 120.00394 * 174.79228 * 9 7 3 11 11 C 1.38964 * 120.03677 * 326.16781 * 10 9 7 12 12 C 1.38159 * 120.06485 * 179.76416 * 11 10 9 13 13 C 1.38167 * 120.14277 * 0.51081 * 12 11 10 14 14 C 1.38909 * 120.06786 * 359.74702 * 13 12 11 15 15 O 1.35752 * 120.03317 * 179.97438 * 14 13 12 16 16 C 1.34829 * 116.99805 * 185.92359 * 15 14 13 17 17 H 1.07999 * 120.00433 * 5.41204 * 16 15 14 18 18 C 1.38656 * 119.99917 * 185.40557 * 16 15 14 19 19 N 1.31563 * 119.99814 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00398 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46838 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47065 * 120.00023 * 20 18 16 23 23 H 1.48494 * 109.47069 * 240.00495 * 20 18 16 24 24 C 1.38717 * 120.03372 * 146.44533 * 10 9 7 25 25 H 1.08997 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47120 * 300.00511 * 1 2 3 27 27 H 1.09010 * 109.46631 * 60.00352 * 1 2 3 28 28 H 1.08999 * 109.46911 * 239.99983 * 2 1 3 29 29 H 1.08998 * 109.46747 * 120.00117 * 2 1 3 30 30 H 1.08999 * 109.46972 * 299.99453 * 4 3 2 31 31 H 1.08994 * 109.47460 * 60.00138 * 4 3 2 32 32 H 1.09003 * 109.47509 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46668 * 60.00479 * 6 5 3 34 34 H 1.08998 * 109.46911 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47069 * 300.00270 * 6 5 3 36 36 H 0.97008 * 119.99815 * 354.80361 * 9 7 3 37 37 H 1.08000 * 119.96631 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.92878 * 180.23278 * 12 11 10 39 39 H 1.07993 * 119.96451 * 179.71775 * 13 12 11 40 40 H 0.97004 * 119.99526 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.06994 * 359.95681 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4443 -0.1257 5 8 1.6620 2.0814 1.2211 6 6 2.1823 1.4502 2.3927 7 6 1.4392 2.1877 -1.1639 8 8 0.7545 3.1693 -0.9671 9 7 1.6626 1.7635 -2.4235 10 6 1.0180 2.3880 -3.4968 11 6 -0.2691 2.8879 -3.3397 12 6 -0.9043 3.5091 -4.3977 13 6 -0.2667 3.6259 -5.6179 14 6 1.0178 3.1235 -5.7829 15 8 1.6434 3.2383 -6.9822 16 6 2.8362 2.6233 -7.1116 17 1 3.2115 1.9992 -6.3140 18 6 3.5812 2.7919 -8.2688 19 7 3.1243 3.5524 -9.2403 20 14 5.2335 1.9393 -8.4486 21 1 5.5175 1.1472 -7.2249 22 1 5.1984 1.0350 -9.6259 23 1 6.2978 2.9573 -8.6379 24 6 1.6608 2.5037 -4.7206 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9994 0.9053 0.7162 31 1 3.8532 0.9570 -1.0570 32 1 3.9282 2.4720 -0.1261 33 1 3.2716 1.4517 2.3528 34 1 1.8508 1.9951 3.2766 35 1 1.8219 0.4227 2.4423 36 1 2.2703 1.0249 -2.5859 37 1 -0.7717 2.7945 -2.3883 38 1 -1.9032 3.9001 -4.2721 39 1 -0.7677 4.1079 -6.4443 40 1 3.6454 3.6700 -10.0500 41 1 2.6595 2.1127 -4.8463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234135727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:18 Heat of formation + Delta-G solvation = -102.112796 kcal Electronic energy + Delta-G solvation = -23785.190850 eV Core-core repulsion = 20244.462374 eV Total energy + Delta-G solvation = -3540.728477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99703 -40.65610 -39.29346 -37.95903 -35.90624 -34.47650 -34.14506 -31.50542 -30.87443 -30.03694 -28.12423 -27.31280 -25.25413 -24.30003 -23.52613 -22.60737 -20.91804 -19.72241 -19.55342 -18.41872 -17.54549 -16.99916 -16.82692 -16.63189 -16.32307 -16.04233 -15.77095 -15.69836 -15.49382 -14.68743 -14.51296 -14.43435 -14.26108 -14.11056 -13.67286 -13.56307 -13.26850 -13.14155 -12.90912 -12.77710 -12.64121 -12.48286 -12.30843 -12.09868 -12.07124 -11.85974 -11.43853 -11.29969 -10.78760 -10.65685 -10.57170 -9.38385 -8.90319 -8.45832 -6.14728 0.36116 0.67130 1.37153 1.44629 1.53273 1.55585 1.70415 2.18645 2.82970 2.92897 3.16266 3.41095 3.48320 3.55613 3.80324 4.10369 4.21418 4.30133 4.31966 4.42148 4.47073 4.49991 4.58321 4.61944 4.67624 4.69864 4.76294 4.89240 4.99244 4.99573 5.04199 5.11558 5.12515 5.31056 5.35447 5.43569 5.64395 5.65456 6.01819 6.05766 6.17455 6.42011 6.98449 7.04759 7.77655 8.77437 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.004015 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.582139 B = 6972.808392 C = 7969.432583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.144 4.144 3 C 0.105 3.895 4 C -0.180 4.180 5 O -0.388 6.388 6 C 0.015 3.985 7 C 0.524 3.476 8 O -0.545 6.545 9 N -0.655 5.655 10 C 0.189 3.811 11 C -0.202 4.202 12 C -0.052 4.052 13 C -0.213 4.213 14 C 0.136 3.864 15 O -0.226 6.226 16 C -0.413 4.413 17 H 0.105 0.895 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.246 1.246 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.257 4.257 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.422 0.578 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 -11.464 21.104 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.062 3.938 4 C -0.238 4.238 5 O -0.307 6.307 6 C -0.080 4.080 7 C 0.312 3.688 8 O -0.421 6.421 9 N -0.302 5.302 10 C 0.094 3.906 11 C -0.222 4.222 12 C -0.070 4.070 13 C -0.233 4.233 14 C 0.085 3.915 15 O -0.132 6.132 16 C -0.489 4.489 17 H 0.123 0.877 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.838 3.162 21 H -0.169 1.169 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.279 4.279 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.261 0.739 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.831 -10.449 20.932 23.409 hybrid contribution 0.902 -0.276 -0.616 1.126 sum 1.733 -10.725 20.316 23.038 Atomic orbital electron populations 1.21752 0.95581 1.02607 1.01201 1.22228 0.96840 0.92979 1.06050 1.21425 0.95696 0.92684 0.83954 1.22495 0.91742 1.03775 1.05761 1.88052 1.74733 1.54323 1.13558 1.23136 0.99513 0.99008 0.86355 1.20855 0.80071 0.83904 0.83920 1.90712 1.39182 1.27040 1.85147 1.43336 1.46631 1.36193 1.04077 1.17406 0.91268 0.95496 0.86391 1.20820 0.94347 1.07087 0.99978 1.20902 0.99827 0.95844 0.90427 1.20477 0.93814 1.09289 0.99676 1.19581 0.92720 0.93594 0.85620 1.83993 1.33759 1.66996 1.28430 1.21871 0.94618 1.27650 1.04743 0.87750 1.26616 1.03661 0.97715 0.94047 1.70201 1.40119 1.38446 1.07060 0.84526 0.74427 0.77684 0.79556 1.16872 1.19435 1.19713 1.20834 1.02038 1.11748 0.93248 0.90206 0.92835 0.95046 0.88472 0.87243 0.87759 0.89129 0.92510 0.91981 0.88681 0.91710 0.73908 0.85740 0.82951 0.86171 0.91854 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.49 71.98 0.68 -2.13 16 2 C -0.14 -2.03 4.66 30.59 0.14 -1.89 16 3 C 0.11 2.16 0.67 -11.54 -0.01 2.15 16 4 C -0.18 -2.70 8.14 71.98 0.59 -2.12 16 5 O -0.39 -9.14 9.42 -129.94 -1.22 -10.37 16 6 C 0.02 0.20 10.22 113.37 1.16 1.36 16 7 C 0.52 15.71 4.79 87.66 0.42 16.13 16 8 O -0.55 -21.55 14.22 15.99 0.23 -21.33 16 9 N -0.66 -18.91 5.15 -303.55 -1.56 -20.47 16 10 C 0.19 7.11 6.27 38.14 0.24 7.35 16 11 C -0.20 -7.66 8.65 22.43 0.19 -7.46 16 12 C -0.05 -1.92 10.03 22.23 0.22 -1.69 16 13 C -0.21 -9.33 9.99 22.41 0.22 -9.11 16 14 C 0.14 6.80 6.64 22.56 0.15 6.95 16 15 O -0.23 -13.40 9.76 -22.75 -0.22 -13.62 16 16 C -0.41 -23.38 9.44 67.92 0.64 -22.74 16 17 H 0.11 5.32 5.30 -2.91 -0.02 5.30 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 19 N -0.92 -55.81 13.67 21.61 0.30 -55.52 16 20 Si 1.02 41.38 29.55 68.60 2.03 43.41 16 21 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 C -0.26 -11.14 9.04 22.51 0.20 -10.94 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.07 7.82 -2.39 -0.02 1.06 16 27 H 0.03 0.74 7.07 -2.38 -0.02 0.72 16 28 H 0.10 1.06 7.85 -2.39 -0.02 1.04 16 29 H 0.11 0.95 6.29 -2.39 -0.02 0.94 16 30 H 0.10 0.94 6.54 -2.39 -0.02 0.93 16 31 H 0.09 1.07 7.46 -2.39 -0.02 1.05 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 0.60 6.42 -2.38 -0.02 0.59 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 0.59 6.31 -2.39 -0.02 0.58 16 36 H 0.42 9.04 7.78 -92.70 -0.72 8.32 16 37 H 0.12 4.65 6.45 -2.91 -0.02 4.64 16 38 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 39 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.13 5.55 5.71 -2.91 -0.02 5.53 16 Total: -1.00 -78.31 336.45 5.21 -73.11 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.34 Total: 29.74 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 5.32 Total: -24.95 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.27 Total: -75.99 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -1.22 Total: -45.31 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -78.31 5.21 -73.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234135727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.005 kcal (2) G-P(sol) polarization free energy of solvation -78.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds