Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46905 * 109.47121 * 269.95764 * 10 9 7 12 12 C 1.46907 * 111.00030 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47302 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47053 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99737 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99559 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00168 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99336 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47533 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47066 * 120.00322 * 19 17 15 22 22 H 1.48506 * 109.46662 * 239.99495 * 19 17 15 23 23 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 24 24 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 26 26 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 27 27 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 29 29 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 30 30 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 31 31 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 32 32 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 33 33 H 1.00897 * 110.99988 * 56.04306 * 11 10 9 34 34 H 1.09001 * 109.47024 * 299.99967 * 12 11 10 35 35 H 1.09004 * 109.46666 * 59.99745 * 12 11 10 36 36 H 1.09007 * 109.46920 * 300.00388 * 13 12 11 37 37 H 1.09005 * 109.47182 * 59.99800 * 13 12 11 38 38 H 1.08993 * 109.47396 * 300.00179 * 14 13 12 39 39 H 1.08997 * 109.47167 * 60.00142 * 14 13 12 40 40 H 0.96999 * 119.99725 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5754 1.3987 12 6 5.0885 5.0387 1.4440 13 6 5.1280 5.5024 2.9015 14 6 5.2557 7.0262 2.9486 15 6 5.2952 7.4828 4.3843 16 1 5.2356 6.7584 5.1831 17 6 5.4073 8.8254 4.6779 18 7 5.4804 9.7073 3.7051 19 14 5.4570 9.3912 6.4575 20 1 5.3595 8.2120 7.3548 21 1 6.7334 10.1052 6.7144 22 1 4.3168 10.3064 6.7178 23 16 2.5176 -1.4383 -0.0077 24 1 -0.3633 -1.0277 -0.0051 25 1 -0.3633 0.5182 -0.8875 26 1 -0.3633 0.5095 0.8925 27 1 1.8363 2.0648 0.0004 28 1 7.6343 1.1232 1.0287 29 1 7.8339 0.2635 -0.5170 30 1 7.4330 1.9977 -0.5085 31 1 5.8416 3.3840 -0.5017 32 1 4.0677 3.5312 -0.4997 33 1 5.7146 3.1345 1.9126 34 1 6.0064 5.3425 0.9408 35 1 4.2326 5.4903 0.9424 36 1 4.2098 5.1985 3.4044 37 1 5.9837 5.0507 3.4034 38 1 6.1739 7.3296 2.4459 39 1 4.4003 7.4782 2.4467 40 1 5.5597 10.6517 3.9117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237789687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = 73.207499 kcal Electronic energy + Delta-G solvation = -20213.385699 eV Core-core repulsion = 17155.305302 eV Total energy + Delta-G solvation = -3058.080396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.82411 -37.39265 -36.51061 -33.74482 -32.87944 -32.02414 -30.49603 -28.96023 -26.91769 -25.77619 -24.55780 -23.31476 -22.24819 -20.47771 -20.01600 -19.81085 -18.23849 -16.49485 -16.43023 -16.18232 -15.31763 -14.95659 -14.62902 -14.27346 -14.19492 -13.99701 -13.89973 -13.49132 -13.20708 -12.94857 -12.72931 -12.45273 -12.35960 -12.06905 -11.68862 -11.47826 -11.38183 -11.35758 -10.88148 -10.62430 -10.55377 -10.41992 -10.21763 -9.73972 -9.39296 -9.07830 -8.75673 -8.36745 -8.32890 -7.78990 -6.01369 -4.03368 0.66239 0.69549 1.35345 2.02260 2.37194 2.65770 3.30305 3.37809 3.42521 4.10620 4.39778 4.47210 4.49552 4.58553 4.74139 4.81970 4.97612 5.08763 5.21442 5.26434 5.34701 5.41667 5.50689 5.57282 5.64775 5.71675 5.73900 5.82738 6.09556 6.24897 6.40279 6.64075 6.67530 6.71140 7.09164 7.20634 7.48389 7.58713 7.66495 7.80446 7.98895 8.42212 9.04027 9.60860 11.10113 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.002736 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.547122 B =10231.123084 C =11007.624514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.195 4.195 3 C 0.056 3.944 4 N -0.392 5.392 5 C 0.135 3.865 6 N -0.455 5.455 7 C 0.048 3.952 8 C -0.070 4.070 9 C -0.007 4.007 10 C 0.133 3.867 11 N -0.688 5.688 12 C 0.059 3.941 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 S 0.176 5.824 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.181 0.819 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.342 0.658 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.067 -20.950 -11.694 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.314 4.314 3 C -0.073 4.073 4 N -0.070 5.070 5 C -0.231 4.231 6 N -0.180 5.180 7 C -0.084 4.084 8 C -0.128 4.128 9 C -0.121 4.121 10 C 0.003 3.997 11 N -0.320 5.320 12 C -0.069 4.069 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 S 0.425 5.575 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.198 0.802 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.562 -22.769 -11.670 26.680 hybrid contribution 0.744 2.727 0.737 2.921 sum -6.819 -20.042 -10.933 23.827 Atomic orbital electron populations 1.20277 0.85328 1.03688 1.03842 1.23762 1.01339 0.94695 1.11607 1.20260 0.80217 1.01794 1.05009 1.43529 1.05069 1.07639 1.50716 1.26054 0.97796 0.86710 1.12497 1.70471 1.01856 1.24150 1.21476 1.20562 0.96199 0.87421 1.04220 1.20160 0.87610 1.01981 1.03083 1.21064 0.81912 0.94958 1.14211 1.20246 1.01724 0.85843 0.91864 1.60638 1.52709 1.07592 1.11063 1.22163 0.99777 0.85034 0.99922 1.21623 1.00818 0.99664 0.92353 1.19064 0.97053 0.88350 0.97052 1.21293 1.49860 0.92045 0.92499 0.92620 1.25032 0.95369 0.96939 0.97195 1.69972 1.50747 1.01559 1.31330 0.86540 0.77578 0.78716 0.85211 1.19710 1.21012 1.21015 1.84618 0.87319 1.02926 1.82674 0.90595 0.89889 0.89708 0.80220 0.90506 0.90603 0.90787 0.92393 0.90450 0.83980 0.95344 0.91452 0.92634 0.93527 0.96734 0.96613 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.36 36.01 0.37 0.02 16 2 C -0.19 -1.66 6.42 -36.00 -0.23 -1.90 16 3 C 0.06 0.58 11.11 -16.71 -0.19 0.39 16 4 N -0.39 -5.15 3.19 -59.60 -0.19 -5.34 16 5 C 0.14 1.88 8.93 -88.71 -0.79 1.09 16 6 N -0.46 -6.96 11.32 -9.77 -0.11 -7.07 16 7 C 0.05 0.65 7.06 -83.08 -0.59 0.06 16 8 C -0.07 -0.73 10.20 36.01 0.37 -0.36 16 9 C -0.01 -0.10 6.76 -80.75 -0.55 -0.64 16 10 C 0.13 1.65 6.01 -4.97 -0.03 1.62 16 11 N -0.69 -9.97 6.49 -115.05 -0.75 -10.72 16 12 C 0.06 0.98 5.68 -3.83 -0.02 0.96 16 13 C -0.11 -2.18 5.41 -26.74 -0.14 -2.33 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.77 9.11 -34.43 -0.31 -15.09 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 S 0.18 1.75 23.35 -107.50 -2.51 -0.76 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.65 7.12 -51.93 -0.37 0.28 16 31 H 0.06 0.65 7.13 -51.92 -0.37 0.28 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.34 4.86 8.72 -39.29 -0.34 4.52 16 34 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -33.17 350.77 -11.02 -44.19 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.12 Total: -1.84 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.35 Total: -14.23 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.31 Total: -49.37 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.17 -11.02 -44.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237789687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.399 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds