Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46905 * 109.47121 * 269.95764 * 10 9 7 12 12 C 1.46907 * 111.00030 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47302 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47053 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99737 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99559 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00168 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99336 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47533 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47066 * 120.00322 * 19 17 15 22 22 H 1.48506 * 109.46662 * 239.99495 * 19 17 15 23 23 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 24 24 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 26 26 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 27 27 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 29 29 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 30 30 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 31 31 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 32 32 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 33 33 H 1.00897 * 110.99988 * 56.04306 * 11 10 9 34 34 H 1.09001 * 109.47024 * 299.99967 * 12 11 10 35 35 H 1.09004 * 109.46666 * 59.99745 * 12 11 10 36 36 H 1.09007 * 109.46920 * 300.00388 * 13 12 11 37 37 H 1.09005 * 109.47182 * 59.99800 * 13 12 11 38 38 H 1.08993 * 109.47396 * 300.00179 * 14 13 12 39 39 H 1.08997 * 109.47167 * 60.00142 * 14 13 12 40 40 H 0.96999 * 119.99725 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5754 1.3987 12 6 5.0885 5.0387 1.4440 13 6 5.1280 5.5024 2.9015 14 6 5.2557 7.0262 2.9486 15 6 5.2952 7.4828 4.3843 16 1 5.2356 6.7584 5.1831 17 6 5.4073 8.8254 4.6779 18 7 5.4804 9.7073 3.7051 19 14 5.4570 9.3912 6.4575 20 1 5.3595 8.2120 7.3548 21 1 6.7334 10.1052 6.7144 22 1 4.3168 10.3064 6.7178 23 16 2.5176 -1.4383 -0.0077 24 1 -0.3633 -1.0277 -0.0051 25 1 -0.3633 0.5182 -0.8875 26 1 -0.3633 0.5095 0.8925 27 1 1.8363 2.0648 0.0004 28 1 7.6343 1.1232 1.0287 29 1 7.8339 0.2635 -0.5170 30 1 7.4330 1.9977 -0.5085 31 1 5.8416 3.3840 -0.5017 32 1 4.0677 3.5312 -0.4997 33 1 5.7146 3.1345 1.9126 34 1 6.0064 5.3425 0.9408 35 1 4.2326 5.4903 0.9424 36 1 4.2098 5.1985 3.4044 37 1 5.9837 5.0507 3.4034 38 1 6.1739 7.3296 2.4459 39 1 4.4003 7.4782 2.4467 40 1 5.5597 10.6517 3.9117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237789687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = 53.434525 kcal Electronic energy + Delta-G solvation = -20214.243119 eV Core-core repulsion = 17155.305302 eV Total energy + Delta-G solvation = -3058.937817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.73778 -38.28744 -37.72900 -35.60003 -33.68984 -33.56544 -31.81166 -29.85117 -28.33631 -26.78868 -25.84601 -24.27747 -23.77944 -22.02756 -21.08231 -20.64935 -19.12804 -18.49009 -17.40128 -17.30127 -16.55431 -16.49190 -15.92633 -15.46824 -15.20610 -14.90713 -14.64069 -14.58723 -14.33954 -13.89867 -13.75456 -13.59397 -13.39995 -13.21434 -13.14213 -13.07495 -12.69267 -12.47437 -12.26376 -12.18184 -12.10601 -11.55832 -11.46726 -11.27698 -11.21857 -11.06933 -10.56013 -9.64008 -9.46810 -8.67295 -8.20870 -6.31422 -0.18046 -0.13193 0.58177 1.15440 1.39572 1.40000 1.53204 1.53565 1.67514 2.40604 3.12463 3.17270 3.36080 3.65346 3.82345 3.99980 4.00513 4.18414 4.24757 4.34745 4.46516 4.47779 4.71766 4.75536 4.76331 4.78571 4.88187 4.92140 4.97316 5.08067 5.11864 5.22678 5.25666 5.51541 5.51788 5.74851 5.81111 5.85928 5.95593 6.26454 6.32998 6.62624 6.85674 7.37854 8.91075 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.002736 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.547122 B =10231.123084 C =11007.624514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.172 4.172 3 C 0.021 3.979 4 N -0.395 5.395 5 C 0.108 3.892 6 N -0.493 5.493 7 C 0.035 3.965 8 C -0.069 4.069 9 C -0.023 4.023 10 C 0.141 3.859 11 N -0.690 5.690 12 C 0.074 3.926 13 C -0.093 4.093 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 S 0.197 5.803 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.196 0.804 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.345 0.655 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.049 0.951 38 H -0.006 1.006 39 H -0.007 1.007 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -21.538 -11.294 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.291 4.291 3 C -0.106 4.106 4 N -0.073 5.073 5 C -0.258 4.258 6 N -0.218 5.218 7 C -0.096 4.096 8 C -0.126 4.126 9 C -0.138 4.138 10 C 0.012 3.988 11 N -0.322 5.322 12 C -0.054 4.054 13 C -0.131 4.131 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.075 0.925 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.203 1.203 23 S 0.446 5.554 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.213 0.787 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.012 0.988 39 H 0.012 0.988 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.657 -23.376 -11.277 27.360 hybrid contribution 0.987 2.830 0.576 3.052 sum -7.670 -20.546 -10.701 24.402 Atomic orbital electron populations 1.20494 0.82477 1.05084 1.05180 1.24304 1.02814 0.93386 1.08600 1.20663 0.79358 1.03196 1.07351 1.43738 1.05980 1.07389 1.50172 1.26686 0.98425 0.87997 1.12667 1.70432 1.02932 1.25221 1.23196 1.21076 0.97587 0.87154 1.03827 1.20244 0.85985 1.02811 1.03605 1.21180 0.82226 0.95204 1.15140 1.20218 1.02705 0.85365 0.90552 1.60533 1.52942 1.06018 1.12719 1.21846 1.00065 0.86496 0.97008 1.21367 1.00510 0.95986 0.95194 1.18957 0.94924 0.91817 0.95428 1.21730 1.49968 0.92598 0.93815 0.92490 1.25959 0.94778 0.97090 1.01959 1.70090 1.51439 1.02027 1.33732 0.85420 0.77856 0.78393 0.79518 1.18781 1.20281 1.20297 1.84517 0.85860 1.03170 1.81852 0.89169 0.88074 0.88603 0.78721 0.90072 0.90275 0.89295 0.90833 0.89958 0.83729 0.94820 0.91506 0.93279 0.93248 0.98773 0.98847 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.36 71.24 0.74 0.23 16 2 C -0.17 -2.61 6.42 25.74 0.17 -2.44 16 3 C 0.02 0.42 11.11 83.86 0.93 1.35 16 4 N -0.40 -10.20 3.19 -342.49 -1.09 -11.29 16 5 C 0.11 2.97 8.93 179.68 1.60 4.58 16 6 N -0.49 -15.23 11.32 -184.83 -2.09 -17.32 16 7 C 0.04 0.96 7.06 41.36 0.29 1.25 16 8 C -0.07 -1.38 10.20 71.24 0.73 -0.65 16 9 C -0.02 -0.60 6.76 40.54 0.27 -0.32 16 10 C 0.14 3.33 6.01 85.56 0.51 3.84 16 11 N -0.69 -19.22 6.49 -517.91 -3.36 -22.58 16 12 C 0.07 2.41 5.68 86.30 0.49 2.90 16 13 C -0.09 -3.77 5.41 30.59 0.17 -3.61 16 14 C 0.03 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 17 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 18 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 19 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 S 0.20 3.71 23.35 -56.49 -1.32 2.39 16 24 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.09 1.47 7.12 -2.38 -0.02 1.45 16 31 H 0.07 1.52 7.13 -2.38 -0.02 1.50 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.34 9.41 8.72 -89.70 -0.78 8.63 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -71.83 350.77 1.45 -70.38 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.25 Total: 10.10 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 6.75 Total: -21.78 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -6.26 Total: -107.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.32 Total: 2.39 kcal Total: -71.83 1.45 -70.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237789687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.815 kcal (2) G-P(sol) polarization free energy of solvation -71.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds