Wall clock time and date at job start Tue Mar 31 2020 07:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47079 * 2 1 4 4 C 1.53003 * 109.47670 * 239.99556 * 2 1 3 5 5 C 1.50700 * 109.47125 * 119.99666 * 2 1 3 6 6 O 1.20783 * 120.00194 * 359.97438 * 5 2 1 7 7 C 1.49086 * 120.00234 * 180.02562 * 5 2 1 8 8 O 1.21371 * 119.99953 * 355.57949 * 7 5 2 9 9 N 1.34780 * 120.00116 * 175.57411 * 7 5 2 10 10 C 1.46499 * 119.99827 * 5.68094 * 9 7 5 11 11 C 1.50695 * 109.47318 * 276.46650 * 10 9 7 12 12 H 1.08003 * 119.99550 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00386 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99664 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00046 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47291 * 60.00056 * 15 13 11 17 17 H 1.48502 * 109.46896 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47352 * 299.99886 * 15 13 11 19 19 C 1.46500 * 120.00077 * 185.67731 * 9 7 5 20 20 C 1.50704 * 109.47166 * 84.98981 * 19 9 7 21 21 C 1.34505 * 125.78784 * 90.00003 * 20 19 9 22 22 C 1.41384 * 106.83929 * 180.02562 * 21 20 19 23 23 C 1.34517 * 106.84155 * 0.02562 * 22 21 20 24 24 O 1.34304 * 108.42000 * 359.73402 * 23 22 21 25 25 H 1.08999 * 109.47561 * 300.00217 * 1 2 3 26 26 H 1.09001 * 109.46823 * 60.00794 * 1 2 3 27 27 H 1.09003 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47129 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46645 * 299.99315 * 3 2 1 30 30 H 1.08999 * 109.47102 * 59.99501 * 3 2 1 31 31 H 1.09001 * 109.46872 * 300.00194 * 4 2 1 32 32 H 1.08999 * 109.46781 * 59.99784 * 4 2 1 33 33 H 1.08995 * 109.47351 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47299 * 36.47201 * 10 9 7 35 35 H 1.09004 * 109.46745 * 156.46910 * 10 9 7 36 36 H 0.96997 * 119.99670 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47169 * 204.99385 * 19 9 7 38 38 H 1.09004 * 109.47101 * 324.99000 * 19 9 7 39 39 H 1.07999 * 126.58026 * 0.03565 * 21 20 19 40 40 H 1.08004 * 126.58201 * 179.97438 * 22 21 20 41 41 H 1.07993 * 125.79095 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2474 -1.1689 2.0258 7 6 3.4980 -0.8461 1.4668 8 8 4.2862 -0.4562 0.6302 9 7 3.9479 -1.4017 2.6094 10 6 3.0006 -1.9845 3.5629 11 6 2.4419 -0.8974 4.4443 12 1 2.7603 0.1255 4.3075 13 6 1.5244 -1.2086 5.4252 14 7 1.1364 -2.4541 5.5913 15 14 0.8313 0.1392 6.5173 16 1 0.1322 1.1456 5.6783 17 1 -0.1288 -0.4517 7.4839 18 1 1.9390 0.7952 7.2573 19 6 5.3841 -1.4227 2.8978 20 6 5.7862 -0.1210 3.5419 21 6 5.7923 0.1343 4.8625 22 6 6.2343 1.4680 5.0199 23 6 6.4715 1.9481 3.7859 24 8 6.2036 0.9795 2.8949 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1392 33 1 3.1301 -0.7209 -1.2493 34 1 2.1875 -2.4654 3.0193 35 1 3.5133 -2.7238 4.1784 36 1 0.4911 -2.6731 6.2817 37 1 5.6066 -2.2473 3.5750 38 1 5.9392 -1.5554 1.9691 39 1 5.5131 -0.5485 5.6513 40 1 6.3572 1.9997 5.9519 41 1 6.8226 2.9421 3.5516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265068662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:07 Heat of formation + Delta-G solvation = -62.686911 kcal Electronic energy + Delta-G solvation = -25033.999388 eV Core-core repulsion = 21494.980546 eV Total energy + Delta-G solvation = -3539.018842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.41285 -41.81607 -39.47738 -37.58892 -36.14434 -34.63427 -33.81711 -31.81373 -29.21770 -28.45357 -28.19408 -27.58388 -25.85225 -24.70549 -22.59550 -22.17529 -21.10660 -19.39014 -18.80430 -18.26100 -17.89787 -17.48273 -16.88060 -16.54982 -16.35015 -16.20792 -15.69842 -15.36097 -14.91842 -14.60995 -14.33377 -14.07833 -13.77231 -13.70193 -13.62287 -13.50608 -13.19518 -13.03760 -12.96572 -12.93338 -12.75714 -12.55948 -12.49943 -12.42396 -12.05257 -11.88498 -11.77584 -11.50392 -10.77614 -10.60136 -9.96371 -9.74679 -9.30045 -8.16201 -6.23099 0.21443 0.77752 1.35355 1.36676 1.43521 1.66886 2.00074 2.13687 2.28841 2.40936 3.14474 3.17777 3.66115 3.84999 3.96227 3.96641 4.10443 4.20149 4.38008 4.41430 4.47317 4.70065 4.75772 4.78231 4.86513 4.94595 4.96058 4.96593 5.05447 5.07987 5.18090 5.24157 5.26800 5.34616 5.38698 5.53437 5.65948 5.75252 6.08434 6.18218 6.29121 6.44069 6.79971 7.05234 7.42651 8.91704 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010386 B = 0.008781 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.205531 B = 3188.094231 C = 4801.753517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.134 4.134 5 C 0.330 3.670 6 O -0.397 6.397 7 C 0.473 3.527 8 O -0.537 6.537 9 N -0.575 5.575 10 C 0.246 3.754 11 C -0.506 4.506 12 H 0.038 0.962 13 C 0.026 3.974 14 N -0.918 5.918 15 Si 0.940 3.060 16 H -0.281 1.281 17 H -0.280 1.280 18 H -0.269 1.269 19 C 0.191 3.809 20 C -0.043 4.043 21 C -0.194 4.194 22 C -0.230 4.230 23 C -0.042 4.042 24 O -0.187 6.187 25 H 0.043 0.957 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 6.352 -8.866 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.191 4.191 5 C 0.198 3.802 6 O -0.264 6.264 7 C 0.259 3.741 8 O -0.416 6.416 9 N -0.306 5.306 10 C 0.126 3.874 11 C -0.545 4.545 12 H 0.056 0.944 13 C -0.174 4.174 14 N -0.558 5.558 15 Si 0.767 3.233 16 H -0.207 1.207 17 H -0.205 1.205 18 H -0.195 1.195 19 C 0.069 3.931 20 C -0.093 4.093 21 C -0.214 4.214 22 C -0.249 4.249 23 C -0.110 4.110 24 O -0.083 6.083 25 H 0.062 0.938 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.589 6.158 -9.041 12.284 hybrid contribution -0.520 0.470 1.538 1.690 sum 5.069 6.628 -7.503 11.221 Atomic orbital electron populations 1.21738 0.91608 1.02483 1.02800 1.21017 0.97757 0.97388 0.93165 1.21812 1.01831 0.92553 1.02919 1.21843 1.02311 0.99756 0.95167 1.25226 0.88582 0.78633 0.87765 1.90590 1.58589 1.34854 1.42413 1.21278 0.91697 0.78863 0.82280 1.90589 1.57608 1.49018 1.44423 1.48541 1.07717 1.54891 1.19499 1.19544 0.87373 0.93394 0.87127 1.21200 1.24073 0.93429 1.15762 0.94403 1.25431 0.96443 0.97018 0.98516 1.69984 1.33129 1.18602 1.34129 0.85882 0.78556 0.79946 0.78946 1.20701 1.20511 1.19454 1.19973 0.80946 0.90577 1.01620 1.22865 1.04851 0.89907 0.91711 1.21777 1.05191 0.98423 0.96010 1.22119 1.07456 0.95582 0.99764 1.24783 1.04346 0.94655 0.87188 1.84047 1.65410 1.20512 1.38338 0.93827 0.88546 0.92782 0.92169 0.88353 0.94004 0.92772 0.88657 0.91565 0.93824 0.95722 0.92750 0.85773 0.88193 0.84118 0.81676 0.74461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 7.76 71.98 0.56 -3.02 16 2 C -0.09 -2.82 0.76 -52.93 -0.04 -2.86 16 3 C -0.13 -3.79 8.29 71.98 0.60 -3.19 16 4 C -0.13 -3.42 8.29 71.98 0.60 -2.83 16 5 C 0.33 13.43 5.86 28.60 0.17 13.60 16 6 O -0.40 -19.02 11.80 -1.52 -0.02 -19.04 16 7 C 0.47 19.91 7.29 87.16 0.63 20.54 16 8 O -0.54 -22.02 13.04 -3.31 -0.04 -22.07 16 9 N -0.57 -24.77 2.47 -832.53 -2.06 -26.83 16 10 C 0.25 12.26 4.81 85.63 0.41 12.68 16 11 C -0.51 -27.47 7.90 25.60 0.20 -27.27 16 12 H 0.04 2.15 7.81 -2.91 -0.02 2.12 16 13 C 0.03 1.42 5.46 84.66 0.46 1.88 16 14 N -0.92 -53.05 13.29 21.45 0.28 -52.76 16 15 Si 0.94 44.51 29.54 68.60 2.03 46.54 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 C 0.19 6.98 5.98 85.63 0.51 7.49 16 20 C -0.04 -1.61 6.86 24.83 0.17 -1.44 16 21 C -0.19 -7.16 10.81 22.19 0.24 -6.93 16 22 C -0.23 -7.17 10.91 22.19 0.24 -6.93 16 23 C -0.04 -1.22 12.09 66.97 0.81 -0.41 16 24 O -0.19 -6.80 10.65 -2.55 -0.03 -6.82 16 25 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 28 H 0.06 1.90 6.58 -2.39 -0.02 1.88 16 29 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.91 6.29 -2.39 -0.02 1.89 16 34 H 0.04 2.39 5.76 -2.39 -0.01 2.38 16 35 H 0.02 1.26 7.78 -2.38 -0.02 1.24 16 36 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.12 4.01 7.78 -2.39 -0.02 3.99 16 38 H 0.10 3.38 7.50 -2.38 -0.02 3.36 16 39 H 0.14 5.32 8.06 -2.91 -0.02 5.30 16 40 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.24 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -67.17 344.06 6.75 -60.42 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.02 Total: 19.26 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 5.56 Total: 1.30 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.77 Total: -79.59 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.09 Total: -47.93 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.17 6.75 -60.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265068662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.267 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds